Rh4BG345900

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001465
Physical Location & Seq
Reverse (-)
50857850 .. 50862393
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG345900.1

Sequence Viewer

Length: 438 bp
ATGCTTTTGAGATTGGACGTGAGCTATATCGATCCTACTTGGACTGATGGTTTGATTGTGAAGAGCAAAGGTGGAGATGGTAGCTCGATTGGTAATGATTCAAAAAGATCAATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGAAAATGATTTGTTGACCATTCGAGATGAGATCATCCCACGTGCCATTTCATGGTTTATGGGGGAGGCTGGACTGGAGGAGAATACCCAAATATCTGCACAGCACTCCAATTTCCTCAAGAATCTATCAAAAAAATGTCAACGAGTGTGTTGGAAGTCTAAGATTGATCCAGAGAAAGGGGTGCCTAACTTCTGGCTCTACGCATTGCAAAACAATGACTATATAGACGAGGAGATTACTTATCGTGATGAGCGAGAGGTGGACAAGGAGGGATTAGCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

145

Amino Acids

16.6

Weight (kDa)

4.69

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 102 - 136 3.1e-06 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 204
AclWI GGATC 3 cut(s) 26, 157, 314
AcvI CACGTG 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 204, 329
AgeI ACCGGT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 102
AjiI CACGTC 1 cut(s) 19
AluBI AGCT 3 cut(s) 24, 84, 431
AluI AGCT 3 cut(s) 24, 84, 431
AlwI GGATC 3 cut(s) 26, 157, 314
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AsiGI ACCGGT 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 334
BbrPI CACGTG 1 cut(s) 194
BccI CCATC 2 cut(s) 41, 71
Bme18I GGWCC 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 117, 336
BpmI CTGGAG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 329
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 356
BseCI ATCGAT 1 cut(s) 30
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 204, 329
BseMI GCAATG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 3 cut(s) 158, 245, 398
BsgI GTGCAG 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 334
BshTI ACCGGT 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 30
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 204, 329
BsmFI GGGAC 1 cut(s) 129
Bsp143I GATC 5 cut(s) 31, 107, 149, 183, 319
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 117, 336
BspPI GGATC 3 cut(s) 26, 157, 314
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 118
BssMI GATC 5 cut(s) 31, 107, 149, 183, 319
Bst6I CTCTTC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 5 cut(s) 34, 110, 152, 186, 322
BstMBI GATC 5 cut(s) 31, 107, 149, 183, 319
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Bsu15I ATCGAT 1 cut(s) 30
BsuTUI ATCGAT 1 cut(s) 30
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 30
CspAI ACCGGT 1 cut(s) 118
CviAII CATG 1 cut(s) 204
CviJI RGCY 5 cut(s) 24, 84, 221, 349, 431
CviKI_1 RGCY 5 cut(s) 24, 84, 221, 349, 431
DdeI CTNAG 1 cut(s) 312
DpnI GATC 5 cut(s) 33, 109, 151, 185, 321
DpnII GATC 5 cut(s) 31, 107, 149, 183, 319
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 116
Eco72I CACGTG 1 cut(s) 194
FaeI CATG 1 cut(s) 207
FaiI YATR 6 cut(s) 27, 141, 205, 212, 375, 377
FaqI GGGAC 1 cut(s) 129
FatI CATG 1 cut(s) 203
FokI GGATG 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 248
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 207
HincII GTYRAC 2 cut(s) 168, 293
HindII GTYRAC 2 cut(s) 168, 293
HinfI GANTC 2 cut(s) 98, 274
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 168, 293, 415
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 4 cut(s) 176, 271, 323, 398
Hpy8I GTNNAC 3 cut(s) 168, 293, 415
HpyCH4IV ACGT 2 cut(s) 18, 193
HpyCH4V TGCA 2 cut(s) 251, 361
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 2 cut(s) 18, 193
Hsp92II CATG 1 cut(s) 207
Kzo9I GATC 5 cut(s) 31, 107, 149, 183, 319
LguI GCTCTTC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 132, 207, 212, 331, 336
MaeII ACGT 2 cut(s) 18, 193
MalI GATC 5 cut(s) 33, 109, 151, 185, 321
MboI GATC 5 cut(s) 31, 107, 149, 183, 319
MboII GAAGA 1 cut(s) 73
MflI RGATCY 1 cut(s) 149
MluCI AATT 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 8 cut(s) 136, 139, 211, 223, 278, 376, 403, 415
MspI CCGG 1 cut(s) 119
NdeII GATC 5 cut(s) 31, 107, 149, 183, 319
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 2 cut(s) 117, 336
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PfeI GAWTC 2 cut(s) 98, 274
PflMI CCANNNNNTGG 1 cut(s) 204
PinAI ACCGGT 1 cut(s) 118
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 194
PspCI CACGTG 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 117, 336
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 56
Sau3AI GATC 5 cut(s) 31, 107, 149, 183, 319
Sau96I GGNCC 1 cut(s) 116
SetI ASST 7 cut(s) 21, 26, 73, 86, 196, 414, 433
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 262
TaiI ACGT 2 cut(s) 21, 196
TaqI TCGA 3 cut(s) 30, 86, 175
TasI AATT 1 cut(s) 262
TfiI GAWTC 2 cut(s) 98, 274
TspDTI ATGAA 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.