Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

19544068 .. 19546452

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCGACGTCTCCACCTTGTCGTGTGCTCCTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGGAAAGGAGTGCCTAATTTCTGGTTGTATGCTTTAAAAGGCCGTGCCACGTTAGATGCTCAGATTACGGATCAAGATGAAGGAGCTCTCAAGCATCTTACAGACATTAAATGGTCCAGGATACAGAAAGGGTTCAGACTTGAATTCTATTTTCACACTAACCCTTTCTTTGAAAACCCTGTCTTGACCAAGACGTATCACATGAATGATGAAGATGAATTCTTTCTAGAATCTGCAATAGGGACAGAGATTGCATGGCATCCAGAAAAATGCTTGACACAGAAGCTCGATAAGATATCTGGGAAGGGATCAAAGAAAGCTAAGCCAATGACTAATAAAAGCTTCTTTGGCTTTTTCAGTCCACCTGAAATCCCAAAGAACCTGAAAGATACTGTTGAGTTCTTGTGGTGTGTTTACTGCGACTTCTTGATCATTCACGCTGTTACATTACATGATCATTTTATAGAAGAAAAATATGATGCATTGAAAGCAGAGTTTGACAAGGATAGAGCATCAATTCAAGCAAAATATCTTCAATCATGTCAAACTTTGTACGCACAGCGATACAATATCATAAATGATGAAGCAGATGGAGAGAGTATTGATCCTGAAGCAGATGGAGTTAGTAGCGACTCTGAAGAGGAAGCATTTTTCAATGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCATTGCAAAACGATGACTATATAGACGACGAGATTACTTATCGTGATGAGCGAGGGGTGGACAAGGAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

292

Amino Acids

33.62

Weight (kDa)

4.77

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	37 - 167	3.5e-40	Nucleosome assembly protein (NAP)
NAP	PF00956	194 - 286	6.9e-15	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	784
AciI	CCGC	2 cut(s)	45, 99
AclWI	GGATC	3 cut(s)	195, 433, 716
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	260, 335
AcuI	CTGAAG	3 cut(s)	38, 747, 774
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	671
AgsI	TTSAA	7 cut(s)	79, 260, 290, 604, 638, 653, 772
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	5 cut(s)	82, 203, 403, 437, 459
AluI	AGCT	5 cut(s)	82, 203, 403, 437, 459
Alw21I	GWGCWC	2 cut(s)	31, 205
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	3 cut(s)	195, 433, 716
AoxI	GGCC	2 cut(s)	3, 157
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	2 cut(s)	260, 335
Asp700I	GAANNNNTTC	2 cut(s)	248, 339
AspS9I	GGNCC	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	205
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	31, 205
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	2 cut(s)	701, 728
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	235
BciVI	GTATCC	1 cut(s)	231
BclI	TGATCA	2 cut(s)	546, 571
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	2 cut(s)	37, 99
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	2 cut(s)	38, 100
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	6 cut(s)	85, 163, 220, 385, 586, 638
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	806
BseBI	CCWGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	125, 191
BseXI	GCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	5, 159
BshNI	GGYRCC	1 cut(s)	784
BsiHKAI	GWGCWC	2 cut(s)	31, 205
BslFI	GGGAC	2 cut(s)	45, 373
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	45, 373
BsnI	GGCC	2 cut(s)	5, 159
Bsp1286I	GDGCHC	2 cut(s)	31, 205
Bsp143I	GATC	5 cut(s)	187, 425, 546, 571, 721
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	2 cut(s)	45, 99
BspANI	GGCC	2 cut(s)	5, 159
BspCNI	CTCAG	2 cut(s)	124, 190
BspLI	GGNNCC	1 cut(s)	786
BspPI	GGATC	3 cut(s)	195, 433, 716
BspT107I	GGYRCC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	806
BssMI	GATC	5 cut(s)	187, 425, 546, 571, 721
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	750
BstACI	GRCGYC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	111, 177, 438
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	5 cut(s)	190, 428, 549, 574, 724
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	5 cut(s)	187, 425, 546, 571, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	465, 605
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	5, 159
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	4 cut(s)	319, 372, 569, 657
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	3 cut(s)	111, 177, 438
DpnI	GATC	5 cut(s)	189, 427, 548, 573, 723
DpnII	GATC	5 cut(s)	187, 425, 546, 571, 721
DraI	TTTAAA	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	3 cut(s)	38, 747, 774
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	2 cut(s)	260, 335
EcoRII	CCWGG	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	414
EcoT22I	ATGCAT	2 cut(s)	601, 808
EcoT38I	GRGCYC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	4 cut(s)	322, 375, 572, 660
FaqI	GGGAC	2 cut(s)	45, 373
FatI	CATG	4 cut(s)	318, 371, 568, 656
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	2 cut(s)	546, 571
Fnu4HI	GCNGC	2 cut(s)	37, 99
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	37, 99
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	37, 99
HaeIII	GGCC	2 cut(s)	5, 159
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	322, 375, 572, 660
HindIII	AAGCTT	2 cut(s)	80, 457
HinfI	GANTC	2 cut(s)	347, 749
Hpy166II	GTNNAC	3 cut(s)	479, 532, 865
Hpy188I	TCNGA	3 cut(s)	180, 254, 754
Hpy188III	TCNNGA	9 cut(s)	89, 113, 191, 301, 344, 380, 544, 725, 848
Hpy8I	GTNNAC	3 cut(s)	479, 532, 865
Hpy99I	CGWCG	2 cut(s)	11, 836
HpyAV	CCTTC	2 cut(s)	191, 415
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	3 cut(s)	9, 167, 311
HpyCH4V	TGCA	7 cut(s)	36, 108, 353, 371, 599, 806, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	465, 605
HpyF3I	CTNAG	3 cut(s)	111, 177, 438
HpySE526I	ACGT	3 cut(s)	9, 167, 311
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	322, 375, 572, 660
Ksp22I	TGATCA	2 cut(s)	546, 571
Kzo9I	GATC	5 cut(s)	187, 425, 546, 571, 721
LmnI	GCTCC	2 cut(s)	34, 200
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	6 cut(s)	85, 163, 220, 385, 586, 638
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	3 cut(s)	9, 167, 311
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	5 cut(s)	189, 427, 548, 573, 723
MboI	GATC	5 cut(s)	187, 425, 546, 571, 721
MboII	GAAGA	6 cut(s)	44, 104, 341, 596, 641, 767
MhlI	GDGCHC	2 cut(s)	31, 205
MluCI	AATT	5 cut(s)	74, 133, 260, 335, 633
MlyI	GAGTC	1 cut(s)	743
MnlI	CCTC	4 cut(s)	96, 751, 851, 865
Mph1103I	ATGCAT	2 cut(s)	601, 808
MroXI	GAANNNNTTC	2 cut(s)	248, 339
MseI	TTAA	2 cut(s)	152, 225
MslI	CAYNNNNRTG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	465, 605
NdeII	GATC	5 cut(s)	187, 425, 546, 571, 721
NlaIII	CATG	4 cut(s)	322, 375, 572, 660
NlaIV	GGNNCC	1 cut(s)	786
NsiI	ATGCAT	2 cut(s)	601, 808
PcsI	WCGNNNNNNNCGW	1 cut(s)	853
PdmI	GAANNNNTTC	2 cut(s)	248, 339
PfeI	GAWTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	38, 100
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	321
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	152, 225
SatI	GCNGC	2 cut(s)	37, 99
Sau3AI	GATC	5 cut(s)	187, 425, 546, 571, 721
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	31, 205
SfaNI	GCATC	6 cut(s)	85, 163, 220, 385, 586, 638
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	74, 133, 260, 335, 633
SsiI	CCGC	2 cut(s)	45, 99
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	3 cut(s)	12, 170, 314
TaqI	TCGA	1 cut(s)	405
TasI	AATT	5 cut(s)	74, 133, 260, 335, 633
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	152, 225
Tru9I	TTAA	2 cut(s)	152, 225
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	5 cut(s)	210, 335, 342, 348, 714
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	2 cut(s)	260, 335
XbaI	TCTAGA	1 cut(s)	343
XmnI	GAANNNNTTC	2 cut(s)	248, 339
XspI	CTAG	1 cut(s)	344
ZraI	GACGTC	1 cut(s)	10
Zsp2I	ATGCAT	2 cut(s)	601, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.