Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

36991663 .. 36993598

Gene Structure 1936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTAGATGCTCAGACTACGGATCAAGATGAAGGAGCTCTCAAGCATCTTACAGACATTAAATGGCCCAGGATACAGAAAGGGTTCAGACTTGAATTCTATTTTCACACTAACCCTTTCTTTGAAAACCCTGTCTTGACCAAGACGTATCACATGAATGATGAAGATGAATTCTTTCTAGAATCTGCAACAGGGACAGAGATTGCATGGCATCCAGAAAAATGCTTGACACAGAAGCTCAATAAGATATTTGGGAAGGGATCAAAGAAAGCTAAGCCAATGACTAATAAAAGCTTCTTTGGCTTTTTCAGTCCACCTGAAATCCCAAAGAACCTAAAAGATATGAAAGATACTATTGAGGTCATAAATCTGAAAGACGAGATGGAAAGGGATTGTTTCTTTGGGTTGACCATTCGAGATGAGATCATCCCACGTGCCGTTTCATGGTTTATGGGGGAGGCTGGACTTGAGGAGAATACCCAAATATCTGCACAACACTCCAATTTCCTTAAGAATCTATCAAAAAAATGTCAGGGAATTAAGTATCAGGATCAATGTTTGGATGACGTTAAAGAAGAATATGAAGGGAACTGTTATAGGAGGAGTGCAAGCTATGCTTCTACAGGTACTCCCATTGTGCTTGTCATTATCTCTGTTGGTTTTGTCAAGTGTGAATCCTTGGAAGCTAGTGTTCTGCATAAAATCAAACATACAATAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

240

Amino Acids

27.57

Weight (kDa)

6.01

Isoelectric Point (pI)

23.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	2 - 153	3.8e-41	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	30, 268, 558
AcsI	RAATTY	2 cut(s)	95, 170
AcvI	CACGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	95, 125
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	6 cut(s)	38, 238, 272, 294, 612, 686
AluI	AGCT	6 cut(s)	38, 238, 272, 294, 612, 686
Alw21I	GWGCWC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	30, 268, 558
AoxI	GGCC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	95, 170
Asp700I	GAANNNNTTC	2 cut(s)	83, 174
AspS9I	GGNCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	66
BfaI	CTAG	2 cut(s)	179, 687
BfmI	CTRYAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	66
BlpI	GCTNAGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	55, 220
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	26, 488
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	68, 678
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	68, 678
BseGI	GGATG	3 cut(s)	211, 426, 568
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	485, 616
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	4 cut(s)	22, 260, 423, 550
Bsp1720I	GCTNAGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	25
BspPI	GGATC	3 cut(s)	30, 268, 558
BspTI	CTTAAG	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	68, 678
BssMI	GATC	4 cut(s)	22, 260, 423, 550
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	593
BstAFI	CTTAAG	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	2 cut(s)	12, 273
BstF5I	GGATG	3 cut(s)	211, 426, 568
BstKTI	GATC	4 cut(s)	25, 263, 426, 553
BstMBI	GATC	4 cut(s)	22, 260, 423, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 614
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	621
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	211, 426, 568
Cac8I	GCNNGC	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	3 cut(s)	154, 207, 444
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	2 cut(s)	12, 273
DpnI	GATC	4 cut(s)	24, 262, 425, 552
DpnII	GATC	4 cut(s)	22, 260, 423, 550
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	38
EcoRI	GAATTC	2 cut(s)	95, 170
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	3 cut(s)	157, 210, 447
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	3 cut(s)	153, 206, 443
FokI	GGATG	3 cut(s)	198, 413, 575
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	2 cut(s)	179, 687
HaeIII	GGCC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	157, 210, 447
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	3 cut(s)	182, 514, 674
Hpy166II	GTNNAC	2 cut(s)	314, 408
Hpy188I	TCNGA	3 cut(s)	15, 89, 372
Hpy188III	TCNNGA	6 cut(s)	26, 136, 179, 215, 416, 548
Hpy8I	GTNNAC	2 cut(s)	314, 408
HpyAV	CCTTC	3 cut(s)	26, 250, 578
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	3 cut(s)	146, 433, 567
HpyCH4V	TGCA	5 cut(s)	188, 206, 491, 608, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 614
HpyF3I	CTNAG	2 cut(s)	12, 273
HpySE526I	ACGT	3 cut(s)	146, 433, 567
Hsp92II	CATG	3 cut(s)	157, 210, 447
Kzo9I	GATC	4 cut(s)	22, 260, 423, 550
LmnI	GCTCC	1 cut(s)	35
LweI	GCATC	2 cut(s)	55, 220
MaeI	CTAG	2 cut(s)	179, 687
MaeII	ACGT	3 cut(s)	146, 433, 567
MalI	GATC	4 cut(s)	24, 262, 425, 552
MboI	GATC	4 cut(s)	22, 260, 423, 550
MboII	GAAGA	2 cut(s)	176, 587
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	4 cut(s)	95, 170, 502, 537
MnlI	CCTC	4 cut(s)	352, 451, 463, 594
MroXI	GAANNNNTTC	2 cut(s)	83, 174
MseI	TTAA	4 cut(s)	60, 510, 540, 570
MslI	CAYNNNNRTG	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	300, 614
NdeII	GATC	4 cut(s)	22, 260, 423, 550
NlaIII	CATG	3 cut(s)	157, 210, 447
PdmI	GAANNNNTTC	2 cut(s)	83, 174
PfeI	GAWTC	3 cut(s)	182, 514, 674
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	68
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	4 cut(s)	60, 510, 540, 570
Sau3AI	GATC	4 cut(s)	22, 260, 423, 550
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	2 cut(s)	55, 220
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	3 cut(s)	41, 467, 509
SmoI	CTYRAG	3 cut(s)	41, 467, 509
Sse9I	AATT	4 cut(s)	95, 170, 502, 537
SspMI	CTAG	2 cut(s)	179, 687
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	3 cut(s)	149, 436, 570
TaqI	TCGA	1 cut(s)	415
TasI	AATT	4 cut(s)	95, 170, 502, 537
TfiI	GAWTC	3 cut(s)	182, 514, 674
Tru1I	TTAA	4 cut(s)	60, 510, 540, 570
Tru9I	TTAA	4 cut(s)	60, 510, 540, 570
TspDTI	ATGAA	7 cut(s)	45, 170, 177, 183, 359, 432, 597
TspGWI	ACGGA	1 cut(s)	35
Vha464I	CTTAAG	1 cut(s)	509
XapI	RAATTY	2 cut(s)	95, 170
XbaI	TCTAGA	1 cut(s)	178
XmnI	GAANNNNTTC	2 cut(s)	83, 174
XspI	CTAG	2 cut(s)	179, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.