Rh6DG488100

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
64905919 .. 64909789
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG488100.1

Sequence Viewer

Length: 1692 bp
ATGATCCAGAGAGACCTTGATAACAAAAAGGCAGAGTTTTACATTGAGAGAGCAAAACTTGAAGCCAGCCATCTGGAGTCTTGTGAACCTCTGTACCTCCAGCGATACGATATTGTGAATGGTGTGGTTAAAGATACTGGAGTTACTACTGATGCTGTAAATCAAGAGGAAAATGCTGCCCGAGGTACATCAGTGACCCAGACCAAAATACAGCTAAAAGGGAAAGGGGTGCCTAATTTCTGGTTATATGCTTTAAAAGGCTGTGACACCGTAGATGACGAGATTACGGATCAAGATGAAGGAGCTCTCAAACATCTTACAGACATCAAATGGTCCAGGATACAGAAAGGGTTCAGACTTGAATTCCATTTTAGCACTAACCCCTTCTTTGAAAACTCTCTGTTGACCAAGACGTATCACATGACTGATGAAGATGAATCCTTTCTAGAACGTGCAATAGGGACAGAGATTACATGGCGTCCGGAAAAATGCTTGACACAGGAGCTCGCTGTGAAATCTGGGAAGGGATCAAAGAACGCTAAGCCAATGACTAATAAAAGCTTCTTCTGCTTTTTCAGTCCACCTAACGTGCCAATGAACTTGAAAGATAAGAATGATAAAGTTGAGATCTTAAATCTGAGATACCATGTGTTAATGGATCTTTTCTTGGGGTTGACCATTCGAGATGAGATCATCCCACATGCCATTTCATGGTTTACGGGGGAGGCTGCACTGGAGGAGGAGACCCAAATATCTGCACAGCACTCCAATTTCCTTGAGAATCTAGCAAAAAATGTCAGAGAGTGTGTTGAAAGCCTTAGACTGATCCAGGAAAAATATGATGCATTGAAAGCAAAGTTTGACGAGGATAGAACATCAATTCAAGCAAAATATCGTCAATCGTGTCAACTTTTGTATGAACAGCGATACAATATCATAAATGATGGAGAGAGTATCGATCCTGAAGCAGATGGAGTTGGTAGTGATTCTGAAGAGGAAGCATTCGTCGATGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCTTTGCAAAACAATGACTATATAGACAATGAGATCACTTATCGTGATGAACAAGCTCTAAAATATCTTAAAGACATCAAGTGTTCCCCCATAGATGACTCCAAGGGATTCAAACTTGACTTCTGCTTTAAAGCCAATCCCTTCTTTAAAAACTCTGTCTTGACCAAGACATATCGCATGGTTGATGAGGATAGATCCCTTGTGAAGGATATAAAAGGGACTGAGGTTGAATGGTATCCCGCAAGATGCTTGACACAGATACCCGTTAAGAAGAAACCCGAGACACGATCGGAGAATGCGAAGTCAATCACTACAACTGAAGATTGTGATAGTTTCTTCTCCTTTTTCAGTGCACTTGAAGTAAATGATACCTATAAGCGGACAAATCAGGTGGCGCGTGATTTTAAGATCGGGTCAATTATTCGAGATCAGATTATCCCCCATGCAGTTTCATGGTTTACAGGGGAGGCTATTGAGAGAGATGACTCGTCAGATGATGAAGACCGATACCTTGGACTTGAAGCTCAATTTGATGATGAAGACGATGAAGATGATGATGACGATGATGATTATGAAGACCTTGATGATGGATTAGACTCTGATGGATGCTCTGAGGACGAAGAAGACATGGAAAATTACAATTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

563

Amino Acids

65.04

Weight (kDa)

4.5

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 2 - 242 9.1e-62 Nucleosome assembly protein (NAP)
NAP PF00956 270 - 503 1.4e-63 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 229, 1021
AccB7I CCANNNNNTGG 1 cut(s) 711
AccII CGCG 1 cut(s) 1438
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 2 cut(s) 1281, 1420
AclWI GGATC 6 cut(s) 297, 535, 666, 820, 953, 1230
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 3 cut(s) 984, 1011, 1380
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 2 cut(s) 95, 187
AfiI CCNNNNNNNGG 3 cut(s) 711, 1246, 1419
AjnI CCWGG 2 cut(s) 335, 828
AluBI AGCT 6 cut(s) 214, 305, 505, 561, 1097, 1565
AluI AGCT 6 cut(s) 214, 305, 505, 561, 1097, 1565
Alw21I GWGCWC 3 cut(s) 307, 507, 1396
Alw26I GTCTC 3 cut(s) 6, 737, 1316
Alw44I GTGCAC 1 cut(s) 1392
AlwI GGATC 6 cut(s) 297, 535, 666, 820, 953, 1230
Ama87I CYCGRG 2 cut(s) 180, 1319
Aor13HI TCCGGA 1 cut(s) 481
ApaLI GTGCAC 1 cut(s) 1392
ApeKI GCWGC 2 cut(s) 176, 728
ApoI RAATTY 1 cut(s) 362
Asp700I GAANNNNTTC 2 cut(s) 350, 441
AspLEI GCGC 1 cut(s) 1438
AspS9I GGNCC 1 cut(s) 333
AvaI CYCGRG 2 cut(s) 180, 1319
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 1396
BaeI ACNNNNGTAYC 6 cut(s) 77, 110, 126, 159, 177, 210
BanI GGYRCC 2 cut(s) 229, 1021
BanII GRGCYC 2 cut(s) 307, 507
BbsI GAAGAC 4 cut(s) 1548, 1587, 1623, 1671
Bbv12I GWGCWC 3 cut(s) 307, 507, 1396
BbvI GCAGC 2 cut(s) 163, 715
BccI CCATC 5 cut(s) 78, 938, 965, 1622, 1637
BciT130I CCWGG 2 cut(s) 337, 830
BciVI GTATCC 2 cut(s) 333, 1287
BcoDI GTCTC 3 cut(s) 6, 737, 1316
BfaI CTAG 2 cut(s) 446, 785
BfuI GTATCC 2 cut(s) 333, 1287
BglII AGATCT 1 cut(s) 627
BisI GCNGC 2 cut(s) 177, 729
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 2 cut(s) 178, 730
Bme1390I CCNGG 2 cut(s) 337, 830
Bme18I GGWCC 1 cut(s) 333
BmeT110I CYCGRG 2 cut(s) 180, 1319
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 231, 1023
BmrFI CCNGG 2 cut(s) 337, 830
BmsI GCATC 4 cut(s) 142, 832, 1277, 1637
BpiI GAAGAC 4 cut(s) 1548, 1587, 1623, 1671
BpmI CTGGAG 4 cut(s) 83, 95, 159, 755
Bpu1102I GCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 797
Bsa29I ATCGAT 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 478
BsaI GGTCTC 2 cut(s) 6, 737
BsaJI CCNNGG 3 cut(s) 181, 1143, 1552
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 3 cut(s) 711, 1246, 1419
Bse1I ACTGG 2 cut(s) 142, 738
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 2 cut(s) 337, 830
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 3 cut(s) 181, 1143, 1552
BseGI GGATG 2 cut(s) 693, 1652
BseLI CCNNNNNNNGG 3 cut(s) 711, 1246, 1419
BseMII CTCAG 3 cut(s) 629, 1254, 1644
BseNI ACTGG 2 cut(s) 142, 738
BseRI GAGGAG 2 cut(s) 752, 755
BseSI GKGCMC 1 cut(s) 1396
BseXI GCAGC 2 cut(s) 163, 715
BsgI GTGCAG 2 cut(s) 714, 741
Bsh1236I CGCG 1 cut(s) 1438
Bsh1285I CGRYCG 1 cut(s) 1331
BshNI GGYRCC 2 cut(s) 229, 1021
BshVI ATCGAT 1 cut(s) 957
BsiEI CGRYCG 1 cut(s) 1331
BsiHKAI GWGCWC 3 cut(s) 307, 507, 1396
BsiHKCI CYCGRG 2 cut(s) 180, 1319
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 2 cut(s) 475, 1273
BslI CCNNNNNNNGG 3 cut(s) 711, 1246, 1419
BsmAI GTCTC 3 cut(s) 6, 737, 1316
BsmFI GGGAC 2 cut(s) 475, 1273
BsmI GAATGC 2 cut(s) 1001, 1342
Bso31I GGTCTC 2 cut(s) 6, 737
BsoBI CYCGRG 2 cut(s) 180, 1319
Bsp1286I GDGCHC 3 cut(s) 307, 507, 1396
Bsp13I TCCGGA 1 cut(s) 481
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 2 cut(s) 1281, 1420
BspCNI CTCAG 3 cut(s) 630, 1255, 1645
BspDI ATCGAT 1 cut(s) 957
BspEI TCCGGA 1 cut(s) 481
BspFNI CGCG 1 cut(s) 1438
BspLI GGNNCC 2 cut(s) 231, 1023
BspPI GGATC 6 cut(s) 297, 535, 666, 820, 953, 1230
BspT107I GGYRCC 2 cut(s) 229, 1021
BspTNI GGTCTC 2 cut(s) 6, 737
BsrI ACTGG 2 cut(s) 142, 738
BssECI CCNNGG 3 cut(s) 181, 1143, 1552
BssNI GRCGYC 1 cut(s) 478
BssT1I CCWWGG 2 cut(s) 1143, 1552
Bst2UI CCWGG 2 cut(s) 337, 830
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 987
BstACI GRCGYC 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 67, 507
BstDEI CTNAG 5 cut(s) 540, 638, 818, 1263, 1653
BstENI CCTNNNNNAGG 1 cut(s) 1244
BstF5I GGATG 2 cut(s) 693, 1652
BstFNI CGCG 1 cut(s) 1438
BstHHI GCGC 1 cut(s) 1438
BstMAI GTCTC 3 cut(s) 6, 737, 1316
BstMCI CGRYCG 1 cut(s) 1331
BstMWI GCNNNNNNNGC 2 cut(s) 567, 851
BstNI CCWGG 2 cut(s) 337, 830
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 2 cut(s) 335, 828
BstSLI GKGCMC 1 cut(s) 1396
BstUI CGCG 1 cut(s) 1438
BstV1I GCAGC 2 cut(s) 163, 715
BstV2I GAAGAC 4 cut(s) 1548, 1587, 1623, 1671
BstX2I RGATCY 3 cut(s) 627, 658, 1235
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 3 cut(s) 627, 658, 1235
Bsu15I ATCGAT 1 cut(s) 957
BsuI GTATCC 2 cut(s) 333, 1287
BsuTUI ATCGAT 1 cut(s) 957
BtsCI GGATG 2 cut(s) 693, 1652
BtsIMutI CAGTG 3 cut(s) 198, 731, 1396
Cac8I GCNNGC 2 cut(s) 67, 507
CfoI GCGC 1 cut(s) 1438
Cfr13I GGNCC 1 cut(s) 333
ClaI ATCGAT 1 cut(s) 957
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 94, 186
CspCI CAANNNNNGTGG 2 cut(s) 1413, 1448
CviAII CATG 9 cut(s) 421, 474, 647, 701, 711, 1219, 1484, 1494, 1669
CviQI GTAC 2 cut(s) 94, 186
DdeI CTNAG 5 cut(s) 540, 638, 818, 1263, 1653
DraI TTTAAA 3 cut(s) 255, 1171, 1189
Eam1104I CTCTTC 1 cut(s) 987
EarI CTCTTC 1 cut(s) 987
Ecl136II GAGCTC 2 cut(s) 305, 505
Eco130I CCWWGG 2 cut(s) 1143, 1552
Eco24I GRGCYC 2 cut(s) 307, 507
Eco31I GGTCTC 2 cut(s) 6, 737
Eco47I GGWCC 1 cut(s) 333
Eco53kI GAGCTC 2 cut(s) 305, 505
Eco57I CTGAAG 3 cut(s) 984, 1011, 1380
Eco88I CYCGRG 2 cut(s) 180, 1319
EcoICRI GAGCTC 2 cut(s) 305, 505
EcoNI CCTNNNNNAGG 1 cut(s) 1244
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 335, 828
EcoT14I CCWWGG 2 cut(s) 1143, 1552
EcoT22I ATGCAT 1 cut(s) 847
EcoT38I GRGCYC 2 cut(s) 307, 507
ErhI CCWWGG 2 cut(s) 1143, 1552
FaeI CATG 9 cut(s) 424, 477, 650, 704, 714, 1222, 1487, 1497, 1672
FaqI GGGAC 2 cut(s) 475, 1273
FatI CATG 9 cut(s) 420, 473, 646, 700, 710, 1218, 1483, 1493, 1668
FauI CCCGC 1 cut(s) 1288
Fnu4HI GCNGC 2 cut(s) 177, 729
FokI GGATG 2 cut(s) 680, 1659
FriOI GRGCYC 2 cut(s) 307, 507
Fsp4HI GCNGC 2 cut(s) 177, 729
FspBI CTAG 2 cut(s) 446, 785
GlaI GCGC 1 cut(s) 1437
GluI GCNGC 2 cut(s) 177, 729
GsuI CTGGAG 4 cut(s) 83, 95, 159, 755
HapII CCGG 1 cut(s) 482
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 1438
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 9 cut(s) 424, 477, 650, 704, 714, 1222, 1487, 1497, 1672
Hin6I GCGC 1 cut(s) 1436
HinP1I GCGC 1 cut(s) 1436
HincII GTYRAC 3 cut(s) 405, 675, 908
HindII GTYRAC 3 cut(s) 405, 675, 908
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 8 cut(s) 77, 437, 781, 986, 1139, 1149, 1526, 1637
HpaII CCGG 1 cut(s) 482
Hpy166II GTNNAC 8 cut(s) 86, 405, 581, 675, 717, 908, 1394, 1500
Hpy188I TCNGA 9 cut(s) 356, 639, 800, 991, 1333, 1473, 1534, 1642, 1654
Hpy8I GTNNAC 8 cut(s) 86, 405, 581, 675, 717, 908, 1394, 1500
Hpy99I CGWCG 1 cut(s) 1010
HpyAV CCTTC 5 cut(s) 293, 394, 517, 1192, 1240
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 3 cut(s) 413, 451, 588
HpyCH4V TGCA 7 cut(s) 455, 731, 758, 845, 1048, 1394, 1487
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 851
HpyF3I CTNAG 5 cut(s) 540, 638, 818, 1263, 1653
HpySE526I ACGT 3 cut(s) 413, 451, 588
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 9 cut(s) 424, 477, 650, 704, 714, 1222, 1487, 1497, 1672
HspAI GCGC 1 cut(s) 1436
Kpn2I TCCGGA 1 cut(s) 481
LmnI GCTCC 2 cut(s) 302, 502
Lsp1109I GCAGC 2 cut(s) 163, 715
LweI GCATC 4 cut(s) 142, 832, 1277, 1637
MaeI CTAG 2 cut(s) 446, 785
MaeII ACGT 3 cut(s) 413, 451, 588
MaeIII GTNAC 3 cut(s) 142, 193, 263
MflI RGATCY 3 cut(s) 627, 658, 1235
MhlI GDGCHC 3 cut(s) 307, 507, 1396
MluCI AATT 8 cut(s) 235, 362, 769, 879, 1458, 1568, 1675, 1681
MlyI GAGTC 4 cut(s) 86, 1133, 1520, 1631
Mph1103I ATGCAT 1 cut(s) 847
MroI TCCGGA 1 cut(s) 481
MroXI GAANNNNTTC 2 cut(s) 350, 441
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 337, 830
Mva1269I GAATGC 2 cut(s) 1001, 1342
MvaI CCWGG 2 cut(s) 337, 830
MvnI CGCG 1 cut(s) 1438
MwoI GCNNNNNNNGC 2 cut(s) 567, 851
NlaIII CATG 9 cut(s) 424, 477, 650, 704, 714, 1222, 1487, 1497, 1672
NlaIV GGNNCC 2 cut(s) 231, 1023
NmuCI GTSAC 2 cut(s) 193, 263
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 1 cut(s) 704
PcsI WCGNNNNNNNCGW 1 cut(s) 1337
PctI GAATGC 2 cut(s) 1001, 1342
PdmI GAANNNNTTC 2 cut(s) 350, 441
PfeI GAWTC 4 cut(s) 437, 781, 986, 1149
PflMI CCANNNNNTGG 1 cut(s) 711
PfoI TCCNGGA 2 cut(s) 335, 828
PkrI GCNGC 2 cut(s) 178, 730
Ple19I CGATCG 1 cut(s) 1331
PleI GAGTC 4 cut(s) 85, 1133, 1520, 1631
PpsI GAGTC 4 cut(s) 85, 1133, 1520, 1631
Psp124BI GAGCTC 2 cut(s) 307, 507
Psp6I CCWGG 2 cut(s) 335, 828
PspGI CCWGG 2 cut(s) 335, 828
PspN4I GGNNCC 2 cut(s) 231, 1023
PspPI GGNCC 1 cut(s) 333
PsuI RGATCY 3 cut(s) 627, 658, 1235
PvuI CGATCG 1 cut(s) 1331
RsaI GTAC 2 cut(s) 95, 187
RsaNI GTAC 2 cut(s) 94, 186
SacI GAGCTC 2 cut(s) 307, 507
SatI GCNGC 2 cut(s) 177, 729
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 4 cut(s) 86, 1133, 1520, 1631
ScrFI CCNGG 2 cut(s) 337, 830
SduI GDGCHC 3 cut(s) 307, 507, 1396
SfaNI GCATC 4 cut(s) 142, 832, 1277, 1637
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
Sse9I AATT 8 cut(s) 235, 362, 769, 879, 1458, 1568, 1675, 1681
SsiI CCGC 2 cut(s) 1281, 1420
SspMI CTAG 2 cut(s) 446, 785
SstI GAGCTC 2 cut(s) 307, 507
StyD4I CCNGG 2 cut(s) 335, 828
StyI CCWWGG 2 cut(s) 1143, 1552
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 3 cut(s) 416, 454, 591
TaqI TCGA 4 cut(s) 682, 957, 1008, 1465
TaqII GACCGA 1 cut(s) 1560
TasI AATT 8 cut(s) 235, 362, 769, 879, 1458, 1568, 1675, 1681
TfiI GAWTC 4 cut(s) 437, 781, 986, 1149
TscAI CASTG 3 cut(s) 198, 738, 1396
TseFI GTSAC 2 cut(s) 193, 263
TseI GCWGC 2 cut(s) 176, 728
Tsp45I GTSAC 2 cut(s) 193, 263
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 3 cut(s) 198, 738, 1396
Van91I CCANNNNNTGG 1 cut(s) 711
VneI GTGCAC 1 cut(s) 1392
VpaK11BI GGWCC 1 cut(s) 333
XagI CCTNNNNNAGG 1 cut(s) 1244
XapI RAATTY 1 cut(s) 362
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 704
XmnI GAANNNNTTC 2 cut(s) 350, 441
XspI CTAG 2 cut(s) 446, 785
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.