Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

6866919 .. 6872753

Gene Structure 5835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG087600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGAGGAACGACAAGGATAACGTCAAGGTTTCTGATCTTGGATCTTCTGCTGTTGGTAAAGGAGAGCTTCGACCACGCTTTCTTAATCCTGTCAAGCACTCCTATCTCCTCAAGATCCTTTCACTCGATGCCAGAAATCGCGTTGAGGAACTTATGGAGATTCAGGAAGTGCATGACCGATTAAAGGCAGAGTTTTACAAGGAGAGGGGAGCACTTGAAGCCAAATATGAGAAATCATATGAACCTCTGTACGAACAGCGATACAATATCACAAATGGAGTCATTATTGATTGTGAATCTGCAACAGCAAATCAAGAGGAAAAGGGAGTGCCTAATTTTTGGCTCTTTGCTTTCAGAGGCAATGATGTGCTAAATGATATGATCATGGACCATGACGAAAGAGTTCTCAAACATCTTGAAAACGTCAAGTGGGTCAGGACAGATAACCTTAGGGGTTTCAAACTCGAATTCTACTTTCGTCCCAACCCTTTCTTTAAGAACTCTATCTTGTCCATGACATATCACATGATTGATGACGATGATTCCATTATAGAGAAAGTAATAGGGACGGAAGTTCAGTGGCATTCAAAAAACTGCTTGGAGAGAGACATGACTCAACATTCTATAAGTTTCTTCAACATTTTCAGTCCGACTGAAGTTCATAACAAGTATAAAGACCTAGGACTGAAATACGAGATGGAACAAAATTATTTCATTGGACTAACCATTCGGGATGAGATAATTCCTCGTGCTATATTATGGTTTACGGGGGAGGCTGCGCTACAGAAGATGACAAAGATCACAACAGAGCATTCCTGTTTCCTTGATAGCCTATCTCCGGGTGTTAAAAAGCATGTTAATATTCTTGAAAACATTCAGAGCGACCATGATGAACTGAAGAAAATGTTTTACAAGGAAAGAGCAAACCTTGAAGCCAAGTATCAAAACTTGTTTCAGAATTTGTATGATAAGCGATGCGATATTGTGAATGGTGTTGTTCAAGCTAAAAAAGTGTCTAATGACTCCGAAGCATCAATTAATCAAGAGGATATTACAATTCAAGATATCAAGGCTCCCGAAGAGAAAAGTGTACCTAACTTTTGGCGCCATGCTTTGGTAAACCATGAGTTGCTAGATGCGGAGATTACGACTCCCGATGGACGAGCTCTCATGTATCTTAAAGACATCAAGTGCTCAAGGATAGATAGTCCTAAGGGGTTTAAACTTGAGTTCTTCTTTAATAAAAATCCTTTCTTTAAAAACTCTGTCTTGATCAAGACATATGAATATCTAGATGAAGATGAGGCCATTGTACAGAAAGTAACAGGGTTGAAGATCGAATGGTATCCCAAAAACTGCTTGACATCGAAGGTCATTAAGAAGCCTGAGAAGGAAATAAATAGTGTTGACATTAGACCGGAACAATGTGAAAGTTTCTTCAACTTTTTCGATCCACTTCCAATTGATGAAAAAGCTCCCAAGGAACACATAGACGAGATGAGGCGAGATCTTTACATTGGGTTAACCATTCGAGACGAGATCATTCCTCGTGCTGTTCTATGGTATGTAGGGGAGGGTGCACAGGGAAAGATGTCCATCGATTGGGGAGAGTCAGAAGATGAAGAAGGTGATGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

546

Amino Acids

63.93

Weight (kDa)

5.28

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	46 - 258	7.7e-52	Nucleosome assembly protein (NAP)
NAP	PF00956	285 - 525	2.5e-62	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1104
AccB7I	CCANNNNNTGG	2 cut(s)	1114, 1602
AccII	CGCG	1 cut(s)	141
AciI	CCGC	1 cut(s)	1139
AclWI	GGATC	3 cut(s)	49, 109, 1445
AcsI	RAATTY	2 cut(s)	467, 958
AcuI	CTGAAG	2 cut(s)	675, 917
AcyI	GRCGYC	1 cut(s)	1105
AfaI	GTAC	3 cut(s)	251, 1092, 1314
AfiI	CCNNNNNNNGG	4 cut(s)	184, 838, 1114, 1602
AluBI	AGCT	4 cut(s)	67, 1004, 1166, 1475
AluI	AGCT	4 cut(s)	67, 1004, 1166, 1475
Alw21I	GWGCWC	4 cut(s)	214, 1168, 1196, 1582
Alw26I	GTCTC	2 cut(s)	600, 1527
Alw44I	GTGCAC	1 cut(s)	1578
AlwI	GGATC	3 cut(s)	49, 109, 1445
AoxI	GGCC	1 cut(s)	1305
ApaLI	GTGCAC	1 cut(s)	1578
ApeKI	GCWGC	1 cut(s)	776
ApoI	RAATTY	2 cut(s)	467, 958
ArsI	GACNNNNNNTTYG	2 cut(s)	711, 743
AseI	ATTAAT	1 cut(s)	1038
Asp700I	GAANNNNTTC	2 cut(s)	402, 873
AspA2I	CCTAGG	1 cut(s)	679
AspLEI	GCGC	2 cut(s)	781, 1107
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	1640
AvaII	GGWCC	1 cut(s)	388
AvrII	CCTAGG	1 cut(s)	679
AxyI	CCTNAGG	2 cut(s)	449, 1212
BaeGI	GKGCMC	1 cut(s)	1582
BanI	GGYRCC	1 cut(s)	1104
BanII	GRGCYC	1 cut(s)	1168
BauI	CACGAG	2 cut(s)	747, 1548
Bbv12I	GWGCWC	4 cut(s)	214, 1168, 1196, 1582
BbvI	GCAGC	1 cut(s)	763
BccI	CCATC	3 cut(s)	691, 1151, 1604
BciVI	GTATCC	1 cut(s)	1356
BclI	TGATCA	2 cut(s)	381, 1272
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	600, 1527
BfaI	CTAG	4 cut(s)	680, 1133, 1292, 1639
BfmI	CTRYAG	1 cut(s)	782
BfoI	RGCGCY	1 cut(s)	1108
BfuI	GTATCC	1 cut(s)	1356
BglII	AGATCT	1 cut(s)	1507
BisI	GCNGC	1 cut(s)	777
BlnI	CCTAGG	1 cut(s)	679
BlsI	GCNGC	1 cut(s)	778
Bme1390I	CCNGG	1 cut(s)	840
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	2 cut(s)	1074, 1106
BmrFI	CCNGG	1 cut(s)	840
BmsI	GCATC	4 cut(s)	118, 965, 1040, 1126
BpuEI	CTTGAG	3 cut(s)	95, 1180, 1247
BpuMI	CCSGG	1 cut(s)	840
Bsa29I	ATCGAT	1 cut(s)	1599
BsaBI	GATNNNNATC	1 cut(s)	1595
BsaHI	GRCGYC	1 cut(s)	1105
BsaJI	CCNNGG	2 cut(s)	679, 1479
BsaWI	WCCGGW	1 cut(s)	1417
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 838, 1114, 1602
Bse21I	CCTNAGG	2 cut(s)	449, 1212
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	1595
BseCI	ATCGAT	1 cut(s)	1599
BseDI	CCNNGG	2 cut(s)	679, 1479
BseGI	GGATG	1 cut(s)	739
BseJI	GATNNNNATC	1 cut(s)	1595
BseLI	CCNNNNNNNGG	4 cut(s)	184, 838, 1114, 1602
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	1377
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	1582
BseXI	GCAGC	1 cut(s)	763
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	1307
BshNI	GGYRCC	1 cut(s)	1104
BshVI	ATCGAT	1 cut(s)	1599
BsiHKAI	GWGCWC	4 cut(s)	214, 1168, 1196, 1582
BsiSI	CCGG	2 cut(s)	839, 1418
BslFI	GGGAC	2 cut(s)	465, 580
BslI	CCNNNNNNNGG	4 cut(s)	184, 838, 1114, 1602
BsmAI	GTCTC	2 cut(s)	600, 1527
BsmBI	CGTCTC	1 cut(s)	1527
BsmFI	GGGAC	2 cut(s)	465, 580
BsmI	GAATGC	2 cut(s)	583, 811
BsnI	GGCC	1 cut(s)	1307
Bsp1286I	GDGCHC	4 cut(s)	214, 1168, 1196, 1582
Bsp1407I	TGTACA	1 cut(s)	1312
BspACI	CCGC	1 cut(s)	1139
BspANI	GGCC	1 cut(s)	1307
BspCNI	CTCAG	1 cut(s)	1378
BspDI	ATCGAT	1 cut(s)	1599
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	1074, 1106
BspPI	GGATC	3 cut(s)	49, 109, 1445
BspT107I	GGYRCC	1 cut(s)	1104
BsrDI	GCAATG	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	1312
BssECI	CCNNGG	2 cut(s)	679, 1479
BssNI	GRCGYC	1 cut(s)	1105
BssSI	CACGAG	2 cut(s)	747, 1548
BssT1I	CCWWGG	2 cut(s)	679, 1479
Bst2BI	CACGAG	2 cut(s)	747, 1548
Bst6I	CTCTTC	1 cut(s)	1074
BstACI	GRCGYC	1 cut(s)	1105
BstAUI	TGTACA	1 cut(s)	1312
BstDEI	CTNAG	3 cut(s)	449, 1212, 1386
BstF5I	GGATG	1 cut(s)	739
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	1108
BstHHI	GCGC	2 cut(s)	781, 1107
BstMAI	GTCTC	2 cut(s)	600, 1527
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	838
BstSFI	CTRYAG	1 cut(s)	782
BstSLI	GKGCMC	1 cut(s)	1582
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	763
BstX2I	RGATCY	3 cut(s)	41, 114, 1507
BstYI	RGATCY	3 cut(s)	41, 114, 1507
Bsu15I	ATCGAT	1 cut(s)	1599
Bsu36I	CCTNAGG	2 cut(s)	449, 1212
BsuI	GTATCC	1 cut(s)	1356
BsuRI	GGCC	1 cut(s)	1307
BsuTUI	ATCGAT	1 cut(s)	1599
BtgZI	GCGATG	1 cut(s)	988
BtsCI	GGATG	1 cut(s)	739
BtsIMutI	CAGTG	1 cut(s)	584
CfoI	GCGC	2 cut(s)	781, 1107
Cfr13I	GGNCC	1 cut(s)	388
ClaI	ATCGAT	1 cut(s)	1599
Csp6I	GTAC	3 cut(s)	250, 1091, 1313
CviQI	GTAC	3 cut(s)	250, 1091, 1313
DdeI	CTNAG	3 cut(s)	449, 1212, 1386
DinI	GGCGCC	1 cut(s)	1106
DraI	TTTAAA	2 cut(s)	1222, 1258
Eam1104I	CTCTTC	1 cut(s)	1074
EarI	CTCTTC	1 cut(s)	1074
Ecl136II	GAGCTC	1 cut(s)	1166
Eco130I	CCWWGG	2 cut(s)	679, 1479
Eco24I	GRGCYC	1 cut(s)	1168
Eco32I	GATATC	1 cut(s)	1066
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	1166
Eco57I	CTGAAG	2 cut(s)	675, 917
Eco81I	CCTNAGG	2 cut(s)	449, 1212
EcoICRI	GAGCTC	1 cut(s)	1166
EcoRI	GAATTC	1 cut(s)	467
EcoRV	GATATC	1 cut(s)	1066
EcoT14I	CCWWGG	2 cut(s)	679, 1479
EcoT38I	GRGCYC	1 cut(s)	1168
EgeI	GGCGCC	1 cut(s)	1106
EheI	GGCGCC	1 cut(s)	1106
ErhI	CCWWGG	2 cut(s)	679, 1479
Esp3I	CGTCTC	1 cut(s)	1527
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	465, 580
FauNDI	CATATG	2 cut(s)	238, 1282
FbaI	TGATCA	2 cut(s)	381, 1272
Fnu4HI	GCNGC	1 cut(s)	777
FokI	GGATG	1 cut(s)	746
FriOI	GRGCYC	1 cut(s)	1168
Fsp4HI	GCNGC	1 cut(s)	777
FspBI	CTAG	4 cut(s)	680, 1133, 1292, 1639
GlaI	GCGC	2 cut(s)	780, 1106
GluI	GCNGC	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	1108
HaeIII	GGCC	1 cut(s)	1307
HapII	CCGG	2 cut(s)	839, 1418
HhaI	GCGC	2 cut(s)	781, 1107
Hin1I	GRCGYC	1 cut(s)	1105
Hin6I	GCGC	2 cut(s)	779, 1105
HinP1I	GCGC	2 cut(s)	779, 1105
HincII	GTYRAC	2 cut(s)	1408, 1524
HindII	GTYRAC	2 cut(s)	1408, 1524
HinfI	GANTC	8 cut(s)	160, 279, 296, 542, 613, 1022, 1150, 1610
HpaI	GTTAAC	1 cut(s)	1524
HpaII	CCGG	2 cut(s)	839, 1418
HphI	GGTGA	1 cut(s)	1640
Hpy166II	GTNNAC	6 cut(s)	765, 1091, 1120, 1408, 1524, 1580
Hpy188I	TCNGA	7 cut(s)	34, 356, 651, 879, 957, 1027, 1615
Hpy8I	GTNNAC	6 cut(s)	765, 1091, 1120, 1408, 1524, 1580
HpyAV	CCTTC	3 cut(s)	1363, 1384, 1619
HpyCH4IV	ACGT	2 cut(s)	21, 423
HpyCH4V	TGCA	3 cut(s)	172, 302, 1580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	449, 1212, 1386
HpySE526I	ACGT	2 cut(s)	21, 423
Hsp92I	GRCGYC	1 cut(s)	1105
HspAI	GCGC	2 cut(s)	779, 1105
KasI	GGCGCC	1 cut(s)	1104
Ksp22I	TGATCA	2 cut(s)	381, 1272
KspAI	GTTAAC	1 cut(s)	1524
LmnI	GCTCC	3 cut(s)	209, 1078, 1480
Lsp1109I	GCAGC	1 cut(s)	763
LweI	GCATC	4 cut(s)	118, 965, 1040, 1126
MaeI	CTAG	4 cut(s)	680, 1133, 1292, 1639
MaeII	ACGT	2 cut(s)	21, 423
MaeIII	GTNAC	1 cut(s)	1321
MfeI	CAATTG	1 cut(s)	1461
MflI	RGATCY	3 cut(s)	41, 114, 1507
MhlI	GDGCHC	4 cut(s)	214, 1168, 1196, 1582
MluCI	AATT	8 cut(s)	334, 467, 706, 741, 958, 1035, 1056, 1461
Mly113I	GGCGCC	1 cut(s)	1105
MlyI	GAGTC	5 cut(s)	288, 607, 1016, 1144, 1619
MmeI	TCCRAC	1 cut(s)	674
MroXI	GAANNNNTTC	2 cut(s)	402, 873
MspI	CCGG	2 cut(s)	839, 1418
MspR9I	CCNGG	1 cut(s)	840
MssI	GTTTAAAC	1 cut(s)	1222
MunI	CAATTG	1 cut(s)	1461
Mva1269I	GAATGC	2 cut(s)	583, 811
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	1105
NciI	CCSGG	1 cut(s)	840
NdeI	CATATG	2 cut(s)	238, 1282
NlaIV	GGNNCC	2 cut(s)	1074, 1106
NspI	RCATGY	1 cut(s)	857
PctI	GAATGC	2 cut(s)	583, 811
PdmI	GAANNNNTTC	2 cut(s)	402, 873
PfeI	GAWTC	3 cut(s)	160, 296, 542
PflMI	CCANNNNNTGG	2 cut(s)	1114, 1602
PkrI	GCNGC	1 cut(s)	778
PleI	GAGTC	5 cut(s)	287, 607, 1016, 1144, 1618
PluTI	GGCGCC	1 cut(s)	1108
PmeI	GTTTAAAC	1 cut(s)	1222
PpsI	GAGTC	5 cut(s)	287, 607, 1016, 1144, 1618
PshBI	ATTAAT	1 cut(s)	1038
Psp124BI	GAGCTC	1 cut(s)	1168
PspN4I	GGNNCC	2 cut(s)	1074, 1106
PspPI	GGNCC	1 cut(s)	388
PsuI	RGATCY	3 cut(s)	41, 114, 1507
RsaI	GTAC	3 cut(s)	251, 1092, 1314
RsaNI	GTAC	3 cut(s)	250, 1091, 1313
SacI	GAGCTC	1 cut(s)	1168
SatI	GCNGC	1 cut(s)	777
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	5 cut(s)	288, 607, 1016, 1144, 1619
ScrFI	CCNGG	1 cut(s)	840
SduI	GDGCHC	4 cut(s)	214, 1168, 1196, 1582
SfaNI	GCATC	4 cut(s)	118, 965, 1040, 1126
SfcI	CTRYAG	1 cut(s)	782
SfoI	GGCGCC	1 cut(s)	1106
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	3 cut(s)	110, 1195, 1226
SmoI	CTYRAG	3 cut(s)	110, 1195, 1226
Sse9I	AATT	8 cut(s)	334, 467, 706, 741, 958, 1035, 1056, 1461
SsiI	CCGC	1 cut(s)	1139
SspDI	GGCGCC	1 cut(s)	1104
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	4 cut(s)	680, 1133, 1292, 1639
SstI	GAGCTC	1 cut(s)	1168
StyD4I	CCNGG	1 cut(s)	838
StyI	CCWWGG	2 cut(s)	679, 1479
TaiI	ACGT	2 cut(s)	24, 426
TaqI	TCGA	8 cut(s)	70, 126, 465, 1338, 1367, 1449, 1531, 1599
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	8 cut(s)	334, 467, 706, 741, 958, 1035, 1056, 1461
TatI	WGTACW	1 cut(s)	1312
TfiI	GAWTC	3 cut(s)	160, 296, 542
TscAI	CASTG	1 cut(s)	584
TseI	GCWGC	1 cut(s)	776
TspDTI	ATGAA	8 cut(s)	255, 650, 703, 906, 1299, 1311, 1482, 1635
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	584
Van91I	CCANNNNNTGG	2 cut(s)	1114, 1602
VneI	GTGCAC	1 cut(s)	1578
VpaK11BI	GGWCC	1 cut(s)	388
VspI	ATTAAT	1 cut(s)	1038
XapI	RAATTY	2 cut(s)	467, 958
XbaI	TCTAGA	1 cut(s)	1291
XceI	RCATGY	1 cut(s)	857
XmaJI	CCTAGG	1 cut(s)	679
XmnI	GAANNNNTTC	2 cut(s)	402, 873
XspI	CTAG	4 cut(s)	680, 1133, 1292, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.