Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

6701388 .. 6702888

Gene Structure 1501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAAATTTCTGCCCCCATTTTTCTATTGCCTTGTTATTATTATTTGATGAATTTAAATATTGCATGTATTATTTCAACTTGTGAAAAAAAAGAATTTCTCAACTCGCAGAGCGACCATGATGAACTGAAGAAAATGTTTTACAAGGAAAGAGCAAACCTTGAAGCCAAGTATCAAAACTTGTTTCAGAATTTGTATGATAAGCGATGCGATATTGTGAATGGTGTTGTTCAAGCTAAAAAAGTGTCTAATGACTCCGAAGCATCAATTAATCAAGAGGATATTACAATTCAAGATATCAAGGCTCCCGAAGAGAAAAGTGTACCTAACTTTTGGCGCCATGCTTTGGTAAACCATGAGTTGCTAGATGCGGAGATTACGACTCCCGATGGACGAGCTCTCATGTATCTTAAAGACATCAAGTGCTCAAGGATAGATAGTCCTAAGGGGTTTAAACTTGAGTTCTTCTTTAATAAAAATCCTTTCTTTAAAAACTCTGTCTTGATCAAGACATATGAATATCTAGATGAAGATGAGGCCATTGTACAGAAAGTAACAGGGTTGAAGATCGAATGGTATCCCAAAAACTGCTTGACATCGAAGGTCATTAAGAAGCCTGAGAAGGAAATAAATAGTGTTGACATTAGACCGGAACAATGTGAAAGTTTCTTCAACTTTTTCGATCCACTTCCAATTGATGAAAAAGCTCCCAAGGAACACATAGACGAGATGAGGCGAGATCTTTACATTGGGTTAACCATTCGAGACGAGATCATTCCTCGTGCTGTTCTATGGTATGTAGGGGAGGGTGCACAGGGAAAGATGTCCATCGATTGGGGAGAGTCAGAAGATGAAGAAGGTGATGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

290

Amino Acids

33.84

Weight (kDa)

4.92

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	35 - 269	1.1e-60	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccB7I	CCANNNNNTGG	2 cut(s)	346, 834
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	677
AcsI	RAATTY	4 cut(s)	6, 52, 95, 190
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	2 cut(s)	324, 546
AfiI	CCNNNNNNNGG	2 cut(s)	346, 834
AgsI	TTSAA	6 cut(s)	78, 164, 233, 293, 565, 673
AluBI	AGCT	3 cut(s)	236, 398, 707
AluI	AGCT	3 cut(s)	236, 398, 707
Alw21I	GWGCWC	3 cut(s)	400, 428, 814
Alw26I	GTCTC	1 cut(s)	759
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	1 cut(s)	677
AoxI	GGCC	1 cut(s)	537
ApaLI	GTGCAC	1 cut(s)	810
ApoI	RAATTY	4 cut(s)	6, 52, 95, 190
AseI	ATTAAT	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	872
AxyI	CCTNAGG	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	780
Bbv12I	GWGCWC	3 cut(s)	400, 428, 814
BccI	CCATC	2 cut(s)	383, 836
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	3 cut(s)	365, 524, 871
BfoI	RGCGCY	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	588
BglII	AGATCT	1 cut(s)	739
BmiI	GGNNCC	2 cut(s)	306, 338
BmsI	GCATC	3 cut(s)	197, 272, 358
BpuEI	CTTGAG	2 cut(s)	412, 479
Bsa29I	ATCGAT	1 cut(s)	831
BsaBI	GATNNNNATC	1 cut(s)	827
BsaHI	GRCGYC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	711
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 834
Bse21I	CCTNAGG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	827
BseCI	ATCGAT	1 cut(s)	831
BseDI	CCNNGG	1 cut(s)	711
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	2 cut(s)	346, 834
BseMII	CTCAG	1 cut(s)	609
BseSI	GKGCMC	1 cut(s)	814
BshFI	GGCC	1 cut(s)	539
BshNI	GGYRCC	1 cut(s)	336
BshVI	ATCGAT	1 cut(s)	831
BsiHKAI	GWGCWC	3 cut(s)	400, 428, 814
BsiSI	CCGG	1 cut(s)	650
BslI	CCNNNNNNNGG	2 cut(s)	346, 834
BsmAI	GTCTC	1 cut(s)	759
BsmBI	CGTCTC	1 cut(s)	759
BsnI	GGCC	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	400, 428, 814
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	5 cut(s)	504, 567, 682, 739, 771
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	610
BspDI	ATCGAT	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	306, 338
BspPI	GGATC	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	336
BsrGI	TGTACA	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	5 cut(s)	504, 567, 682, 739, 771
BssNI	GRCGYC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	780
BssT1I	CCWWGG	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	780
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	444, 618
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	5 cut(s)	507, 570, 685, 742, 774
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	5 cut(s)	504, 567, 682, 739, 771
BstNSI	RCATGY	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
Bsu15I	ATCGAT	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	539
BsuTUI	ATCGAT	1 cut(s)	831
BtgZI	GCGATG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	831
Csp6I	GTAC	2 cut(s)	323, 545
CviAII	CATG	5 cut(s)	66, 119, 341, 356, 403
CviJI	RGCY	7 cut(s)	167, 236, 305, 398, 539, 616, 707
CviKI_1	RGCY	7 cut(s)	167, 236, 305, 398, 539, 616, 707
CviQI	GTAC	2 cut(s)	323, 545
DdeI	CTNAG	2 cut(s)	444, 618
DinI	GGCGCC	1 cut(s)	338
DpnI	GATC	5 cut(s)	506, 569, 684, 741, 773
DpnII	GATC	5 cut(s)	504, 567, 682, 739, 771
DraI	TTTAAA	3 cut(s)	57, 454, 490
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	711
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	149
Eco81I	CCTNAGG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	711
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	1 cut(s)	338
EheI	GGCGCC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	711
Esp3I	CGTCTC	1 cut(s)	759
FaeI	CATG	5 cut(s)	69, 122, 344, 359, 406
FatI	CATG	5 cut(s)	65, 118, 340, 355, 402
FauNDI	CATATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	504
FriOI	GRGCYC	1 cut(s)	400
FspBI	CTAG	3 cut(s)	365, 524, 871
GlaI	GCGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	1 cut(s)	650
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	5 cut(s)	69, 122, 344, 359, 406
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	2 cut(s)	640, 756
HindII	GTYRAC	2 cut(s)	640, 756
HinfI	GANTC	3 cut(s)	254, 382, 842
HpaI	GTTAAC	1 cut(s)	756
HpaII	CCGG	1 cut(s)	650
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	5 cut(s)	323, 352, 640, 756, 812
Hpy188I	TCNGA	3 cut(s)	189, 259, 847
Hpy188III	TCNNGA	8 cut(s)	275, 293, 308, 386, 502, 508, 524, 764
Hpy8I	GTNNAC	5 cut(s)	323, 352, 640, 756, 812
HpyAV	CCTTC	3 cut(s)	595, 616, 851
HpyCH4V	TGCA	3 cut(s)	4, 65, 812
HpyF3I	CTNAG	2 cut(s)	444, 618
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	5 cut(s)	69, 122, 344, 359, 406
HspAI	GCGC	1 cut(s)	337
KasI	GGCGCC	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	504
KspAI	GTTAAC	1 cut(s)	756
Kzo9I	GATC	5 cut(s)	504, 567, 682, 739, 771
LmnI	GCTCC	2 cut(s)	310, 712
LpnPI	CCDG	4 cut(s)	543, 630, 663, 800
LweI	GCATC	3 cut(s)	197, 272, 358
MaeI	CTAG	3 cut(s)	365, 524, 871
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	5 cut(s)	506, 569, 684, 741, 773
MboI	GATC	5 cut(s)	504, 567, 682, 739, 771
MboII	GAAGA	8 cut(s)	142, 323, 457, 542, 577, 661, 860, 866
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	3 cut(s)	400, 428, 814
MluCI	AATT	7 cut(s)	6, 52, 95, 190, 267, 288, 693
Mly113I	GGCGCC	1 cut(s)	337
MlyI	GAGTC	3 cut(s)	248, 376, 851
MnlI	CCTC	5 cut(s)	271, 529, 726, 789, 799
MseI	TTAA	8 cut(s)	56, 270, 411, 453, 471, 489, 609, 755
MspI	CCGG	1 cut(s)	650
MssI	GTTTAAAC	1 cut(s)	454
MunI	CAATTG	1 cut(s)	693
NarI	GGCGCC	1 cut(s)	337
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	5 cut(s)	504, 567, 682, 739, 771
NlaIII	CATG	5 cut(s)	69, 122, 344, 359, 406
NlaIV	GGNNCC	2 cut(s)	306, 338
NspI	RCATGY	1 cut(s)	69
PflMI	CCANNNNNTGG	2 cut(s)	346, 834
PleI	GAGTC	3 cut(s)	248, 376, 850
PluTI	GGCGCC	1 cut(s)	340
PmeI	GTTTAAAC	1 cut(s)	454
PpsI	GAGTC	3 cut(s)	248, 376, 850
PshBI	ATTAAT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	306, 338
PsuI	RGATCY	1 cut(s)	739
RsaI	GTAC	2 cut(s)	324, 546
RsaNI	GTAC	2 cut(s)	323, 545
SacI	GAGCTC	1 cut(s)	400
SaqAI	TTAA	8 cut(s)	56, 270, 411, 453, 471, 489, 609, 755
Sau3AI	GATC	5 cut(s)	504, 567, 682, 739, 771
SchI	GAGTC	3 cut(s)	248, 376, 851
SduI	GDGCHC	3 cut(s)	400, 428, 814
SetI	ASST	7 cut(s)	162, 238, 328, 400, 606, 709, 862
SfaNI	GCATC	3 cut(s)	197, 272, 358
SfoI	GGCGCC	1 cut(s)	338
SmiI	ATTTAAAT	1 cut(s)	57
SmlI	CTYRAG	2 cut(s)	427, 458
SmoI	CTYRAG	2 cut(s)	427, 458
Sse9I	AATT	7 cut(s)	6, 52, 95, 190, 267, 288, 693
SsiI	CCGC	1 cut(s)	371
SspDI	GGCGCC	1 cut(s)	336
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	3 cut(s)	365, 524, 871
SstI	GAGCTC	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	711
SwaI	ATTTAAAT	1 cut(s)	57
TaqI	TCGA	5 cut(s)	570, 599, 681, 763, 831
TasI	AATT	7 cut(s)	6, 52, 95, 190, 267, 288, 693
TatI	WGTACW	1 cut(s)	544
Tru1I	TTAA	8 cut(s)	56, 270, 411, 453, 471, 489, 609, 755
Tru9I	TTAA	8 cut(s)	56, 270, 411, 453, 471, 489, 609, 755
TspDTI	ATGAA	6 cut(s)	65, 138, 531, 543, 714, 867
Van91I	CCANNNNNTGG	2 cut(s)	346, 834
VneI	GTGCAC	1 cut(s)	810
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	4 cut(s)	6, 52, 95, 190
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	69
XspI	CTAG	3 cut(s)	365, 524, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.