Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

2611997 .. 2615087

Gene Structure 3091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCGAACCTGCGGGTGTTTTCCCTTTGCCAAAGATGAAACTCATGGCGGTGGATCAGAAGAACTCAAGACGTCATCGGGGACGGTACAGCGACCGGTTCACTTCCGGCGTCGCTCCGCTCATGGCGTCGCTACTCGTGGAGTTGTGGCTCTACTCGACGGTGCCGATATAGAGGAAGCTCGAAGGAGCCGCTCTAGAATTGTCGGCGAACCACTGCGAGTTGCTCCCTCCGCCATTAACGAGTGTCTGAGTCTCCGATTGGTGCTTGACTCTGTGGCAATAGAGAAAAAAAAAACTTATTTTATCACTTTGCAGCGATGTGGGATTGTAAATGGTGTTGATGAAGCTGAAAAAGTGATTAATGACTCTGAAGCAGTAAATCAAGAGGTTGCCCCGGAAGAGAAAGGTGTGCCTAACTTCTGGTACCATGCTTTGGTAAACCATGAGTTGCTAGATGCGGAGATTAGTCTTCATGACGAAGAAGCTCTCAAGTATCTTACAGACATCAAGTGGTGGAGAAAAGATGACTCTAAGGAGGCTCCGTTGTTTCATTCTAGCCTTTGCAGGAACTTCCGCTTTTGCTCGGGTTGCATCACGAACTCTTGCATCGATCGTGCCTTTTGCTTGTTGCCGCCATTTACGGCGCCTATTAACCTAAATTGCTTTGTGGTTGTTGATAGCCCAAAGAGGACAAGGACGAACGATGGTGTGGTTATGGAGAAAAGGTTTGTTAACGAGGAGATGAATAGGCCAACGAGGAGGAGGAAGGAGACAGAGATCGAATGGTATCTGGAATACTGTTTGACGAAAGAACGTGAAAGTTTCTTCAACTTTTTCTGTCCCCTTCAAATTGATGAAGATGCTGAGATGGAACTCATAGAAGATATTAGTCGAGATTATTACGTTGGGTCAACCATTCGCAATCATATCATCCCTCGTGCTGTCTTATGGTATTTAGGGGAGGCTGTCCCAGGAGATAAGGTGGTTGGTGTTACAGAGTCGGAAGAAAGTGATGAATATATGGATGAAATCAGTGAAGACGAAGATGAAGATGACGAGAACGAAAATGAAGACAATGAAAAGGAAGATGATAACGGCAATGATGAGAGTGAAGCGCCCATCTTTCTTGGAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

380

Amino Acids

43.31

Weight (kDa)

4.64

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	104 - 177	4.2e-14	Nucleosome assembly protein (NAP)
NAP	PF00956	269 - 321	5.7e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	3 cut(s)	161, 423, 643
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccBSI	CCGCTC	2 cut(s)	119, 192
AciI	CCGC	8 cut(s)	12, 48, 117, 190, 231, 458, 574, 632
AclWI	GGATC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	4 cut(s)	71, 109, 126, 644
AfaI	GTAC	2 cut(s)	87, 425
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgeI	ACCGGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	829, 848
AjnI	CCWGG	1 cut(s)	970
AluBI	AGCT	3 cut(s)	179, 347, 485
AluI	AGCT	3 cut(s)	179, 347, 485
Alw26I	GTCTC	2 cut(s)	257, 764
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	583
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	1 cut(s)	313
AseI	ATTAAT	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	94
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	2 cut(s)	646, 1117
AsuC2I	CCSGG	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	583
BanI	GGYRCC	3 cut(s)	161, 423, 643
BauI	CACGAG	2 cut(s)	135, 936
BbsI	GAAGAC	3 cut(s)	461, 1044, 1077
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	698, 862, 1127
BceAI	ACGGC	2 cut(s)	657, 1111
BciT130I	CCWGG	1 cut(s)	972
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	257, 764
BfaI	CTAG	3 cut(s)	195, 452, 555
BfoI	RGCGCY	2 cut(s)	647, 1118
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	190, 314, 632
BlsI	GCNGC	3 cut(s)	191, 315, 633
Bme1390I	CCNGG	2 cut(s)	395, 972
BmeT110I	CYCGRG	1 cut(s)	583
BmiI	GGNNCC	5 cut(s)	163, 188, 425, 540, 645
BmrFI	CCNGG	2 cut(s)	395, 972
BmsI	GCATC	4 cut(s)	445, 600, 615, 850
BpiI	GAAGAC	3 cut(s)	461, 1044, 1077
BpuEI	CTTGAG	2 cut(s)	50, 473
BpuMI	CCSGG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	609
BsaHI	GRCGYC	4 cut(s)	71, 109, 126, 644
BsaJI	CCNNGG	2 cut(s)	393, 970
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	6 cut(s)	527, 557, 710, 740, 966, 996
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse118I	RCCGGY	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	1105
BseBI	CCWGG	1 cut(s)	972
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	393, 970
BseGI	GGATG	2 cut(s)	930, 1030
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	1105
BseMII	CTCAG	2 cut(s)	239, 855
BseRI	GAGGAG	3 cut(s)	752, 772, 775
BseXI	GCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	2 cut(s)	95, 613
BshFI	GGCC	1 cut(s)	751
BshNI	GGYRCC	3 cut(s)	161, 423, 643
BshTI	ACCGGT	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	609
BsiEI	CGRYCG	2 cut(s)	95, 613
BsiHKCI	CYCGRG	1 cut(s)	583
BsiSI	CCGG	3 cut(s)	95, 106, 395
BslFI	GGGAC	3 cut(s)	94, 825, 953
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	257, 764
BsmFI	GGGAC	3 cut(s)	94, 825, 953
BsnI	GGCC	1 cut(s)	751
BsoBI	CYCGRG	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	53, 610, 777
BspACI	CCGC	8 cut(s)	12, 48, 117, 190, 231, 458, 574, 632
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	2 cut(s)	240, 856
BspDI	ATCGAT	1 cut(s)	609
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	5 cut(s)	163, 188, 425, 540, 645
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	61
BspT107I	GGYRCC	3 cut(s)	161, 423, 643
BsrBI	CCGCTC	2 cut(s)	119, 192
BsrDI	GCAATG	1 cut(s)	1105
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	393, 970
BssMI	GATC	3 cut(s)	53, 610, 777
BssNI	GRCGYC	4 cut(s)	71, 109, 126, 644
BssSI	CACGAG	2 cut(s)	135, 936
Bst2BI	CACGAG	2 cut(s)	135, 936
Bst2UI	CCWGG	1 cut(s)	972
Bst4CI	ACNGT	3 cut(s)	85, 161, 800
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	4 cut(s)	71, 109, 126, 644
BstDEI	CTNAG	3 cut(s)	248, 531, 864
BstF5I	GGATG	2 cut(s)	930, 1030
BstH2I	RGCGCY	2 cut(s)	647, 1118
BstHHI	GCGC	2 cut(s)	646, 1117
BstKTI	GATC	3 cut(s)	56, 613, 780
BstMAI	GTCTC	2 cut(s)	257, 764
BstMBI	GATC	3 cut(s)	53, 610, 777
BstMCI	CGRYCG	2 cut(s)	95, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 588
BstNI	CCWGG	1 cut(s)	972
BstSCI	CCNGG	2 cut(s)	393, 970
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	3 cut(s)	461, 1044, 1077
Bsu15I	ATCGAT	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	751
BsuTUI	ATCGAT	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	930, 1030
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 1039
BveI	ACCTGC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	2 cut(s)	646, 1117
Cfr10I	RCCGGY	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	2 cut(s)	98, 115
Csp6I	GTAC	2 cut(s)	86, 424
CspAI	ACCGGT	1 cut(s)	94
CviAII	CATG	5 cut(s)	44, 122, 428, 443, 473
CviQI	GTAC	2 cut(s)	86, 424
DdeI	CTNAG	3 cut(s)	248, 531, 864
DinI	GGCGCC	1 cut(s)	645
DpnI	GATC	3 cut(s)	55, 612, 779
DpnII	GATC	3 cut(s)	53, 610, 777
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	970
EgeI	GGCGCC	1 cut(s)	645
EheI	GGCGCC	1 cut(s)	645
FaeI	CATG	5 cut(s)	47, 125, 431, 446, 476
FaqI	GGGAC	3 cut(s)	94, 825, 953
FatI	CATG	5 cut(s)	43, 121, 427, 442, 472
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	190, 314, 632
FokI	GGATG	2 cut(s)	917, 1037
Fsp4HI	GCNGC	3 cut(s)	190, 314, 632
FspBI	CTAG	3 cut(s)	195, 452, 555
GlaI	GCGC	2 cut(s)	645, 1116
GluI	GCNGC	3 cut(s)	190, 314, 632
HaeII	RGCGCY	2 cut(s)	647, 1118
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	3 cut(s)	95, 106, 395
HgaI	GACGC	2 cut(s)	98, 115
HhaI	GCGC	2 cut(s)	646, 1117
Hin1I	GRCGYC	4 cut(s)	71, 109, 126, 644
Hin1II	CATG	5 cut(s)	47, 125, 431, 446, 476
Hin6I	GCGC	2 cut(s)	644, 1115
HinP1I	GCGC	2 cut(s)	644, 1115
HincII	GTYRAC	2 cut(s)	733, 912
HindII	GTYRAC	2 cut(s)	733, 912
HinfI	GANTC	5 cut(s)	250, 269, 365, 527, 998
HpaI	GTTAAC	1 cut(s)	733
HpaII	CCGG	3 cut(s)	95, 106, 395
Hpy166II	GTNNAC	4 cut(s)	100, 439, 733, 912
Hpy188I	TCNGA	5 cut(s)	58, 249, 257, 370, 1003
Hpy188III	TCNNGA	7 cut(s)	67, 195, 383, 473, 595, 791, 893
Hpy8I	GTNNAC	4 cut(s)	100, 439, 733, 912
Hpy99I	CGWCG	3 cut(s)	114, 131, 161
HpyAV	CCTTC	3 cut(s)	177, 760, 854
HpyCH4III	ACNGT	3 cut(s)	85, 161, 800
HpyCH4IV	ACGT	3 cut(s)	71, 814, 903
HpyCH4V	TGCA	4 cut(s)	313, 564, 591, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 588
HpyF3I	CTNAG	3 cut(s)	248, 531, 864
HpySE526I	ACGT	3 cut(s)	71, 814, 903
Hsp92I	GRCGYC	4 cut(s)	71, 109, 126, 644
Hsp92II	CATG	5 cut(s)	47, 125, 431, 446, 476
HspAI	GCGC	2 cut(s)	644, 1115
KasI	GGCGCC	1 cut(s)	643
KpnI	GGTACC	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	53, 610, 777
LmnI	GCTCC	4 cut(s)	119, 186, 229, 544
LpnPI	CCDG	9 cut(s)	22, 108, 119, 406, 408, 550, 776, 957, 984
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	4 cut(s)	445, 600, 615, 850
MaeI	CTAG	3 cut(s)	195, 452, 555
MaeII	ACGT	3 cut(s)	71, 814, 903
MaeIII	GTNAC	1 cut(s)	991
MalI	GATC	3 cut(s)	55, 612, 779
MbiI	CCGCTC	2 cut(s)	119, 192
MboI	GATC	3 cut(s)	53, 610, 777
MluCI	AATT	4 cut(s)	198, 658, 849, 1135
Mly113I	GGCGCC	1 cut(s)	644
MlyI	GAGTC	5 cut(s)	259, 263, 359, 521, 1007
MmeI	TCCRAC	1 cut(s)	981
MseI	TTAA	5 cut(s)	237, 360, 651, 732, 1138
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	3 cut(s)	95, 106, 395
MspR9I	CCNGG	2 cut(s)	395, 972
MvaI	CCWGG	1 cut(s)	972
MwoI	GCNNNNNNNGC	2 cut(s)	230, 588
NarI	GGCGCC	1 cut(s)	644
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	3 cut(s)	53, 610, 777
NlaIII	CATG	5 cut(s)	47, 125, 431, 446, 476
NlaIV	GGNNCC	5 cut(s)	163, 188, 425, 540, 645
PagI	TCATGA	1 cut(s)	472
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	191, 315, 633
Ple19I	CGATCG	1 cut(s)	613
PleI	GAGTC	5 cut(s)	258, 263, 359, 521, 1006
PluTI	GGCGCC	1 cut(s)	647
PpsI	GAGTC	5 cut(s)	258, 263, 359, 521, 1006
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	970
PspN4I	GGNNCC	5 cut(s)	163, 188, 425, 540, 645
PvuI	CGATCG	1 cut(s)	613
RsaI	GTAC	2 cut(s)	87, 425
RsaNI	GTAC	2 cut(s)	86, 424
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	5 cut(s)	237, 360, 651, 732, 1138
SatI	GCNGC	3 cut(s)	190, 314, 632
Sau3AI	GATC	3 cut(s)	53, 610, 777
SchI	GAGTC	5 cut(s)	259, 263, 359, 521, 1007
ScrFI	CCNGG	2 cut(s)	395, 972
SfaNI	GCATC	4 cut(s)	445, 600, 615, 850
SfoI	GGCGCC	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	65, 488
SmoI	CTYRAG	2 cut(s)	65, 488
Sse9I	AATT	4 cut(s)	198, 658, 849, 1135
SsiI	CCGC	8 cut(s)	12, 48, 117, 190, 231, 458, 574, 632
SspDI	GGCGCC	1 cut(s)	643
SspMI	CTAG	3 cut(s)	195, 452, 555
StyD4I	CCNGG	2 cut(s)	393, 970
TaaI	ACNGT	3 cut(s)	85, 161, 800
TaiI	ACGT	3 cut(s)	74, 817, 906
TaqI	TCGA	5 cut(s)	156, 181, 609, 780, 892
TasI	AATT	4 cut(s)	198, 658, 849, 1135
TauI	GCSGC	2 cut(s)	192, 634
Tru1I	TTAA	5 cut(s)	237, 360, 651, 732, 1138
Tru9I	TTAA	5 cut(s)	237, 360, 651, 732, 1138
TscAI	CASTG	2 cut(s)	219, 1039
TseI	GCWGC	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	2 cut(s)	219, 1039
Van91I	CCANNNNNTGG	1 cut(s)	433
VspI	ATTAAT	1 cut(s)	360
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	3 cut(s)	195, 452, 555
ZraI	GACGTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.