FvH4_3g06070

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
3506367 .. 3511744
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06070.t1

Sequence Viewer

Length: 1653 bp
ATGATGTCTTGTGTTGGGGGGAACGGAGATGATCGCCCAGCTCTTAATCCAACCAAGCTCCACAGGTTCCCACCGGATACCAGAAAGCGGATTGAGCATCTTATACAGATACAGAAAGACCATGATGAATTAAAGGCTCAGTTTTACAAGGATCGAGGAGCACTTGAAGCTAAATATGAGAAACTCTATCAGCCTCTATACGACAAGAGATACAATATCATGAACGGAATTGGAGTCACTACTGATTCTGAATCACCAACAACAAATCAAGGGGAAAAAGGGATTCCTGAATTTTGGCTCTATGCTTTGAACGCCATGTATGTGCTAGACAAAGAGATTAAAGACTATGATCAAGGAGCTCTCAAACATCTTGTGAACATCAAGTGGCTAAGGACAGATAACCTTAAGGTTTTCAAACTCGAGTTCTACTTTCGTCCCAACCCCTTCTTCAAAAACTCTGTTCTGACCGTGACATATCATATGATTGATGAAGATGAATTCATTATAGAGAAAATAATAGGGACTGAAATTGAGTGGACTTCCGAAAATCGCTTAAAGAAACATAGAACTGGTAATCGTAGAAGTTTCTTCGATCTTTTTAGTCCACCTGAAGCCCATAATGATTGTAAAAACCTAAAACTCAAAGATATATTGCAAGGAAACTATTTAATTGGATCAATCATTCGGGATGATATAATTCCTCGTGCTGTTTTGTGGTTTACGGGGGAGGCTGAGCTAGAACAATTTGAAGAGATGTCATCAGTACATGAATCTTTCCTTAAGAGACTATCACTCGATGTCCAAAAGCGAGTTGACCGTCTCAGAAAAATTCAGAAAGATCATGATGGATTGAAGGCACAGTTTTACCGGGAAAGAGCAGAACTTGAGGCCAGCTATCAAAAAGCATATAATGACATGTACAATGAGAGATATAGGATTGTAAACGGTGTTGTTGAAGCTGAAAAATTGGCCAAGGACTCTGAAGTTGGAAATCAATCCCCCGAAGAGAAAGGTGTGCCAGAATTCTGGCGGCATGCTCTGGTAAACCATGAGTTGCTCGAAACGGAAATTAGTATTCCTGATGGAGAAGCTCTCAAGTATATTACAGACATCAGGTGGTTCAGGAAAGATGACTCTAAGGGGTTCATACTTCAGTTCTACTTTGACAAAAACCCTTTCTTTACAAACACTGTTTTGACCAAGACATATCAGCTTCTTGATGAAGATGAAACCATTCTACACAAAGCATTAGGGACAGAGATTGAATGGTATGCCGGAAACTGTTTGACGAGAGAATGTGAAAGTTTCTTCAACTTTTTCAATCCTGTTCGAATTAATGAAAAGGCTCGCGAAGAACTTGTCGAAGTGATGAGACGAGACTATTACATTGGGTCGACCATTCGCAATGAGATTATACCTCGTGCTGTTTTATGGTATTTAGGGGAGGCTGTCCAGGGAGACAAAGAGTTTGGTATAAAAGAATCTGAAGAAAGTGATGAAGATGTAGATGAAGAGAGTGAAGGTGAAGAGAGTGAAGATGAAGTCAGTGAAGAGGAAGTCAGTGAAGAGGAAGAGAGTGATGAAGGCAAAGAGAGTGAAGGCGAAGAGAGTGAAGACGAAGTCAGTGAAGATGAAGGGAGTGAAGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

551

Amino Acids

64.54

Weight (kDa)

4.71

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 29 - 243 3.9e-55 Nucleosome assembly protein (NAP)
NAP PF00956 269 - 432 3.9e-44 Nucleosome assembly protein (NAP)
NAP PF00956 431 - 482 7.9e-13 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1394
AccII CGCG 1 cut(s) 1350
AciI CCGC 2 cut(s) 88, 1030
AclWI GGATC 2 cut(s) 159, 682
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 4 cut(s) 290, 497, 828, 1022
AcuI CTGAAG 4 cut(s) 630, 1002, 1136, 1506
AfaI GTAC 2 cut(s) 765, 920
AfiI CCNNNNNNNGG 1 cut(s) 87
AflII CTTAAG 2 cut(s) 404, 779
AflIII ACRYGT 1 cut(s) 915
AjnI CCWGG 1 cut(s) 1452
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 9 cut(s) 41, 58, 170, 359, 736, 894, 959, 1091, 1213
AluI AGCT 9 cut(s) 41, 58, 170, 359, 736, 894, 959, 1091, 1213
Alw21I GWGCWC 2 cut(s) 163, 361
Alw26I GTCTC 5 cut(s) 778, 824, 1366, 1371, 1452
AlwI GGATC 2 cut(s) 159, 682
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 2 cut(s) 888, 969
ApoI RAATTY 4 cut(s) 290, 497, 828, 1022
ArsI GACNNNNNNTTYG 4 cut(s) 1344, 1376, 1451, 1483
AseI ATTAAT 1 cut(s) 1335
Asp700I GAANNNNTTC 1 cut(s) 1233
AsuC2I CCSGG 1 cut(s) 869
AsuHPI GGTGA 2 cut(s) 246, 1535
AsuII TTCGAA 1 cut(s) 1330
AvaI CYCGRG 1 cut(s) 419
BalI TGGCCA 1 cut(s) 971
BanII GRGCYC 1 cut(s) 361
BauI CACGAG 2 cut(s) 702, 1419
BbsI GAAGAC 1 cut(s) 1620
Bbv12I GWGCWC 2 cut(s) 163, 361
BccI CCATC 2 cut(s) 839, 1076
BciT130I CCWGG 1 cut(s) 1454
BciVI GTATCC 1 cut(s) 70
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 869
BcoDI GTCTC 5 cut(s) 778, 824, 1366, 1371, 1452
BfaI CTAG 2 cut(s) 326, 737
BfrI CTTAAG 2 cut(s) 404, 779
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 1 cut(s) 1031
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 1 cut(s) 1032
Bme1390I CCNGG 2 cut(s) 869, 1454
BmeT110I CYCGRG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 2 cut(s) 869, 1454
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 1620
BplI GAGNNNNNCTC 2 cut(s) 1077, 1109
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 732
Bpu14I TTCGAA 1 cut(s) 1330
BpuEI CTTGAG 2 cut(s) 905, 1079
BpuMI CCSGG 1 cut(s) 869
BsaJI CCNNGG 2 cut(s) 972, 1453
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 1411
BseBI CCWGG 1 cut(s) 1454
BseDI CCNNGG 2 cut(s) 972, 1453
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 1411
BseMII CTCAG 3 cut(s) 152, 723, 835
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 1350
BshFI GGCC 2 cut(s) 890, 971
BsiHKAI GWGCWC 2 cut(s) 163, 361
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 3 cut(s) 74, 868, 1275
BslFI GGGAC 3 cut(s) 420, 535, 1267
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 5 cut(s) 778, 824, 1366, 1371, 1452
BsmBI CGTCTC 2 cut(s) 824, 1366
BsmFI GGGAC 3 cut(s) 420, 535, 1267
BsnI GGCC 2 cut(s) 890, 971
BsoBI CYCGRG 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 1330
Bsp1286I GDGCHC 2 cut(s) 163, 361
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 6 cut(s) 31, 151, 349, 592, 674, 838
Bsp1720I GCTNAGC 1 cut(s) 732
Bsp68I TCGCGA 1 cut(s) 1350
BspACI CCGC 2 cut(s) 88, 1030
BspANI GGCC 2 cut(s) 890, 971
BspCNI CTCAG 3 cut(s) 151, 724, 834
BspFNI CGCG 1 cut(s) 1350
BspHI TCATGA 2 cut(s) 219, 841
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 2 cut(s) 159, 682
BspT104I TTCGAA 1 cut(s) 1330
BspTI CTTAAG 2 cut(s) 404, 779
BsrDI GCAATG 1 cut(s) 1411
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 2 cut(s) 972, 1453
BssMI GATC 6 cut(s) 31, 151, 349, 592, 674, 838
BssSI CACGAG 2 cut(s) 702, 1419
BssT1I CCWWGG 1 cut(s) 972
Bst2BI CACGAG 2 cut(s) 702, 1419
Bst2UI CCWGG 1 cut(s) 1454
Bst4CI ACNGT 6 cut(s) 469, 818, 861, 947, 1192, 1283
Bst6I CTCTTC 8 cut(s) 744, 999, 1506, 1521, 1545, 1560, 1566, 1599
BstAFI CTTAAG 2 cut(s) 404, 779
BstAUI TGTACA 1 cut(s) 918
BstBI TTCGAA 1 cut(s) 1330
BstC8I GCNNGC 3 cut(s) 892, 1035, 1348
BstDEI CTNAG 5 cut(s) 138, 389, 732, 821, 1137
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 1 cut(s) 1350
BstKTI GATC 6 cut(s) 34, 154, 352, 595, 677, 841
BstMAI GTCTC 5 cut(s) 778, 824, 1366, 1371, 1452
BstMBI GATC 6 cut(s) 31, 151, 349, 592, 674, 838
BstMWI GCNNNNNNNGC 3 cut(s) 94, 167, 311
BstNI CCWGG 1 cut(s) 1454
BstNSI RCATGY 2 cut(s) 919, 1037
BstSCI CCNGG 2 cut(s) 867, 1452
BstUI CGCG 1 cut(s) 1350
BstV2I GAAGAC 1 cut(s) 1620
BstXI CCANNNNNNTGG 1 cut(s) 1026
BsuI GTATCC 1 cut(s) 70
BsuRI GGCC 2 cut(s) 890, 971
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 4 cut(s) 1188, 1552, 1567, 1630
BtuMI TCGCGA 1 cut(s) 1350
Cac8I GCNNGC 3 cut(s) 892, 1035, 1348
CciI TCATGA 2 cut(s) 219, 841
Csp6I GTAC 2 cut(s) 764, 919
CviAII CATG 8 cut(s) 122, 220, 316, 767, 842, 916, 1034, 1049
CviQI GTAC 2 cut(s) 764, 919
DdeI CTNAG 5 cut(s) 138, 389, 732, 821, 1137
DpnI GATC 6 cut(s) 33, 153, 351, 594, 676, 840
DpnII GATC 6 cut(s) 31, 151, 349, 592, 674, 838
EaeI YGGCCR 1 cut(s) 969
Eam1104I CTCTTC 8 cut(s) 744, 999, 1506, 1521, 1545, 1560, 1566, 1599
EarI CTCTTC 8 cut(s) 744, 999, 1506, 1521, 1545, 1560, 1566, 1599
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 972
Eco24I GRGCYC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 4 cut(s) 630, 1002, 1136, 1506
Eco88I CYCGRG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 359
EcoRI GAATTC 2 cut(s) 497, 1022
EcoRII CCWGG 1 cut(s) 1452
EcoT14I CCWWGG 1 cut(s) 972
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 972
Esp3I CGTCTC 2 cut(s) 824, 1366
FaeI CATG 8 cut(s) 125, 223, 319, 770, 845, 919, 1037, 1052
FaqI GGGAC 3 cut(s) 420, 535, 1267
FatI CATG 8 cut(s) 121, 219, 315, 766, 841, 915, 1033, 1048
FauNDI CATATG 1 cut(s) 480
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 1 cut(s) 1394
Fnu4HI GCNGC 1 cut(s) 1031
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 1031
FspBI CTAG 2 cut(s) 326, 737
GluI GCNGC 1 cut(s) 1031
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 890, 971
HapII CCGG 3 cut(s) 74, 868, 1275
Hin1II CATG 8 cut(s) 125, 223, 319, 770, 845, 919, 1037, 1052
HincII GTYRAC 2 cut(s) 814, 1395
HindII GTYRAC 2 cut(s) 814, 1395
HinfI GANTC 8 cut(s) 234, 245, 251, 283, 770, 977, 1133, 1481
HpaII CCGG 3 cut(s) 74, 868, 1275
HphI GGTGA 2 cut(s) 246, 1535
Hpy166II GTNNAC 8 cut(s) 376, 537, 605, 720, 814, 943, 1045, 1395
Hpy188I TCNGA 7 cut(s) 250, 465, 544, 824, 834, 982, 1486
Hpy188III TCNNGA 8 cut(s) 220, 287, 686, 842, 1079, 1123, 1217, 1349
Hpy8I GTNNAC 8 cut(s) 376, 537, 605, 720, 814, 943, 1045, 1395
HpyAV CCTTC 6 cut(s) 454, 847, 1514, 1577, 1592, 1628
HpyCH4III ACNGT 6 cut(s) 469, 818, 861, 947, 1192, 1283
HpyCH4V TGCA 1 cut(s) 655
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 167, 311
HpyF3I CTNAG 5 cut(s) 138, 389, 732, 821, 1137
Hsp92II CATG 8 cut(s) 125, 223, 319, 770, 845, 919, 1037, 1052
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 6 cut(s) 31, 151, 349, 592, 674, 838
LmnI GCTCC 3 cut(s) 63, 158, 356
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 326, 737
MaeIII GTNAC 2 cut(s) 235, 469
MalI GATC 6 cut(s) 33, 153, 351, 594, 676, 840
MboI GATC 6 cut(s) 31, 151, 349, 592, 674, 838
MhlI GDGCHC 2 cut(s) 163, 361
MlsI TGGCCA 1 cut(s) 971
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 3 cut(s) 243, 971, 1127
MmeI TCCRAC 2 cut(s) 74, 967
MnlI CCTC 9 cut(s) 149, 204, 711, 721, 880, 1428, 1438, 1546, 1561
Mox20I TGGCCA 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 1233
MscI TGGCCA 1 cut(s) 971
MseI TTAA 8 cut(s) 45, 131, 339, 405, 554, 668, 780, 1335
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 971
MspCI CTTAAG 2 cut(s) 404, 779
MspI CCGG 3 cut(s) 74, 868, 1275
MspR9I CCNGG 2 cut(s) 869, 1454
MvaI CCWGG 1 cut(s) 1454
MvnI CGCG 1 cut(s) 1350
MwoI GCNNNNNNNGC 3 cut(s) 94, 167, 311
NciI CCSGG 1 cut(s) 869
NdeI CATATG 1 cut(s) 480
NdeII GATC 6 cut(s) 31, 151, 349, 592, 674, 838
NlaIII CATG 8 cut(s) 125, 223, 319, 770, 845, 919, 1037, 1052
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 235, 469
NruI TCGCGA 1 cut(s) 1350
NspI RCATGY 2 cut(s) 919, 1037
NspV TTCGAA 1 cut(s) 1330
PaeI GCATGC 1 cut(s) 1037
PaeR7I CTCGAG 1 cut(s) 419
PagI TCATGA 2 cut(s) 219, 841
PciI ACATGT 1 cut(s) 915
PdmI GAANNNNTTC 1 cut(s) 1233
PfeI GAWTC 5 cut(s) 245, 251, 283, 770, 1481
PflFI GACNNNGTC 1 cut(s) 1619
PkrI GCNGC 1 cut(s) 1032
PleI GAGTC 3 cut(s) 242, 971, 1127
PpsI GAGTC 3 cut(s) 242, 971, 1127
PscI ACATGT 1 cut(s) 915
PshBI ATTAAT 1 cut(s) 1335
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 1452
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 1452
PspN4I GGNNCC 1 cut(s) 68
PspXI VCTCGAGB 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 1619
RruI TCGCGA 1 cut(s) 1350
RsaI GTAC 2 cut(s) 765, 920
RsaNI GTAC 2 cut(s) 764, 919
RseI CAYNNNNRTG 1 cut(s) 320
SacI GAGCTC 1 cut(s) 361
SalI GTCGAC 1 cut(s) 1393
SaqAI TTAA 8 cut(s) 45, 131, 339, 405, 554, 668, 780, 1335
SatI GCNGC 1 cut(s) 1031
Sau3AI GATC 6 cut(s) 31, 151, 349, 592, 674, 838
SchI GAGTC 3 cut(s) 243, 971, 1127
ScrFI CCNGG 2 cut(s) 869, 1454
SduI GDGCHC 2 cut(s) 163, 361
SfaNI GCATC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 419
SfuI TTCGAA 1 cut(s) 1330
SlaI CTCGAG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 5 cut(s) 404, 419, 779, 884, 1094
SmoI CTYRAG 5 cut(s) 404, 419, 779, 884, 1094
SphI GCATGC 1 cut(s) 1037
SsiI CCGC 2 cut(s) 88, 1030
SspMI CTAG 2 cut(s) 326, 737
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 867, 1452
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 6 cut(s) 469, 818, 861, 947, 1192, 1283
TaqI TCGA 8 cut(s) 154, 420, 591, 795, 1059, 1330, 1362, 1394
TatI WGTACW 2 cut(s) 763, 918
TauI GCSGC 1 cut(s) 1033
TfiI GAWTC 5 cut(s) 245, 251, 283, 770, 1481
Tru1I TTAA 8 cut(s) 45, 131, 339, 405, 554, 668, 780, 1335
Tru9I TTAA 8 cut(s) 45, 131, 339, 405, 554, 668, 780, 1335
TscAI CASTG 4 cut(s) 1195, 1552, 1567, 1630
TseFI GTSAC 2 cut(s) 235, 469
Tsp45I GTSAC 2 cut(s) 235, 469
TspGWI ACGGA 3 cut(s) 39, 240, 1079
TspRI CASTG 4 cut(s) 1195, 1552, 1567, 1630
Tth111I GACNNNGTC 1 cut(s) 1619
Vha464I CTTAAG 2 cut(s) 404, 779
VspI ATTAAT 1 cut(s) 1335
XapI RAATTY 4 cut(s) 290, 497, 828, 1022
XceI RCATGY 2 cut(s) 919, 1037
XhoI CTCGAG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 1394
XmnI GAANNNNTTC 1 cut(s) 1233
XspI CTAG 2 cut(s) 326, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.