FvH4_3g34551

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000370
Physical Location & Seq
Forward (+)
29941170 .. 29942551
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34551.t1

Sequence Viewer

Length: 1047 bp
ATGCCACCCACTTCAGGAGATGAGCGTGCACAGTCTTTTCAAGCCCAACAACGTGCATCTGAACAACTTACAGCCGAAGAGCGTGAGCGTGAACGGGAAATGTCTAATCTTGATCGTTTTCTGAAAATAAAACCCTTACAGTTTTACGATACCTCTGAGACAGATAAAGCAGAAACTTGGATGAAGCACATTAAGAAGAAGCTACGCACACTGCATATGCCACCAGAATACCAAATCAACTTGGCTACTCATGTATTCGAGGGTCAGGCTGATACTTGGTGGGAAACAATATGTGATCGATACAATCAGTTTTCAGAGAGTGTGGCTGAGTATGTGGCCAAGTTTACTGAGCTTAGCAAGTTTGCACCTGAAATGGTAGCCACAGATGAGAAGAAGGCACTTAAGTTCGAACAAGGACTTATATGGCCTATTAGAAAACACATTGTAGGGCAGAACCTAACTAGCTATAACACGGTCGTAAATGCAGCTTATAAGCTGGAGCAAGACTATCTGAATTTCAGGAGAAGGCGACGTGGTGTCCCAAACGATTCAAGAGGATCAAGGGGAAAGATAACTAAGCAGAACCTGAAGAGAACACGAGGGGAAAGAAGCGGATCTGGTGGAAGGGATGTTGGGCCTATCATTTGTAACCACTATGGAGAAGTTGGACATGTTAGAACAAGGTGTCCTCACATAGCAGCTTCTAGATCAGCAGCTACGCCACAAAACATACCATTAAGGCCTGCAAACAGTGAGACAACACAGCAGAATACGCAACAACTACAAGAAGGAACTTTTCGCATGACAAATCAGGGTAATCATGGCCGTGGCGTTGGACATGGCAATAGCACTCGTAGAGGAAGGGGTTTTGAAGTGACAGAACACAAGGAAGAAGATCCATATATTACACTTGAGGGTTATGACTGCCTTGATGAGATTGAGTTGAGGGTGAAAGGGAGCTCGAAGGTTCTCGTGTGTCCCTTAGTCTGCCCCCTTCCTCCTCCTCCTCCTCCACCATCAACGGGTGTAAGAGAAAGGAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

349

Amino Acids

39.68

Weight (kDa)

9.03

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AciI CCGC 1 cut(s) 612
AclWI GGATC 3 cut(s) 565, 622, 890
AcoI YGGCCR 2 cut(s) 336, 823
AcsI RAATTY 1 cut(s) 514
AcuI CTGAAG 1 cut(s) 608
AfiI CCNNNNNNNGG 2 cut(s) 14, 1022
AflII CTTAAG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 3 cut(s) 41, 552, 872
AhdI GACNNNNNGTC 1 cut(s) 536
AjiI CACGTC 1 cut(s) 533
AloI GAACNNNNNNTCC 2 cut(s) 670, 702
AluBI AGCT 8 cut(s) 202, 352, 465, 488, 496, 701, 716, 960
AluI AGCT 8 cut(s) 202, 352, 465, 488, 496, 701, 716, 960
Alw21I GWGCWC 2 cut(s) 31, 962
Alw26I GTCTC 2 cut(s) 152, 749
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 3 cut(s) 565, 622, 890
AlwNI CAGNNNCTG 1 cut(s) 586
AoxI GGCC 5 cut(s) 336, 425, 635, 740, 823
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 485, 698, 713
ApoI RAATTY 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 961
AsuII TTCGAA 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 338
BanII GRGCYC 1 cut(s) 962
BauI CACGAG 2 cut(s) 597, 971
Bbv12I GWGCWC 2 cut(s) 31, 962
BbvI GCAGC 3 cut(s) 497, 710, 725
BccI CCATC 1 cut(s) 1024
BceAI ACGGC 1 cut(s) 810
BcoDI GTCTC 2 cut(s) 152, 749
BfaI CTAG 2 cut(s) 462, 705
BfrI CTTAAG 1 cut(s) 401
BisI GCNGC 3 cut(s) 486, 699, 714
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 3 cut(s) 487, 700, 715
BmeRI GACNNNNNGTC 1 cut(s) 536
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 635
BmsI GCATC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 932
Bsa29I ATCGAT 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 826
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 1022
BseCI ATCGAT 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 826
BseGI GGATG 2 cut(s) 186, 634
BseLI CCNNNNNNNGG 2 cut(s) 14, 1022
BseMII CTCAG 3 cut(s) 147, 318, 339
BseRI GAGGAG 4 cut(s) 990, 993, 996, 999
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 3 cut(s) 497, 710, 725
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 5 cut(s) 338, 427, 637, 742, 825
BshVI ATCGAT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 2 cut(s) 31, 962
BslFI GGGAC 2 cut(s) 524, 963
BslI CCNNNNNNNGG 2 cut(s) 14, 1022
BsmAI GTCTC 2 cut(s) 152, 749
BsmFI GGGAC 2 cut(s) 524, 963
BsnI GGCC 5 cut(s) 338, 427, 637, 742, 825
Bsp119I TTCGAA 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 31, 962
Bsp143I GATC 6 cut(s) 112, 295, 557, 614, 707, 895
Bsp1720I GCTNAGC 1 cut(s) 353
BspACI CCGC 1 cut(s) 612
BspANI GGCC 5 cut(s) 338, 427, 637, 742, 825
BspCNI CTCAG 3 cut(s) 148, 319, 340
BspDI ATCGAT 1 cut(s) 298
BspPI GGATC 3 cut(s) 565, 622, 890
BspQI GCTCTTC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 408
BspTI CTTAAG 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 826
BssMI GATC 6 cut(s) 112, 295, 557, 614, 707, 895
BssSI CACGAG 2 cut(s) 597, 971
Bst2BI CACGAG 2 cut(s) 597, 971
Bst4CI ACNGT 4 cut(s) 33, 141, 475, 752
Bst6I CTCTTC 2 cut(s) 72, 584
BstAFI CTTAAG 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 27, 744
BstDEI CTNAG 6 cut(s) 156, 327, 348, 353, 576, 982
BstDSI CCRYGG 1 cut(s) 826
BstF5I GGATG 2 cut(s) 186, 634
BstKTI GATC 6 cut(s) 115, 298, 560, 617, 710, 898
BstMAI GTCTC 2 cut(s) 152, 749
BstMBI GATC 6 cut(s) 112, 295, 557, 614, 707, 895
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 1 cut(s) 772
BstNSI RCATGY 1 cut(s) 674
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 497, 710, 725
BstX2I RGATCY 2 cut(s) 614, 895
BstYI RGATCY 2 cut(s) 614, 895
Bsu15I ATCGAT 1 cut(s) 298
BsuRI GGCC 5 cut(s) 338, 427, 637, 742, 825
BsuTUI ATCGAT 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 826
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 2 cut(s) 186, 634
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 209, 757
Cac8I GCNNGC 2 cut(s) 27, 744
CaiI CAGNNNCTG 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 635
ClaI ATCGAT 1 cut(s) 298
CviAII CATG 5 cut(s) 251, 671, 802, 821, 839
DdeI CTNAG 6 cut(s) 156, 327, 348, 353, 576, 982
DpnI GATC 6 cut(s) 114, 297, 559, 616, 709, 897
DpnII GATC 6 cut(s) 112, 295, 557, 614, 707, 895
DriI GACNNNNNGTC 1 cut(s) 536
EaeI YGGCCR 2 cut(s) 336, 823
Eam1104I CTCTTC 2 cut(s) 72, 584
Eam1105I GACNNNNNGTC 1 cut(s) 536
EarI CTCTTC 2 cut(s) 72, 584
Ecl136II GAGCTC 1 cut(s) 960
Eco147I AGGCCT 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 962
Eco53kI GAGCTC 1 cut(s) 960
Eco57I CTGAAG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 960
EcoT38I GRGCYC 1 cut(s) 962
FaeI CATG 5 cut(s) 254, 674, 805, 824, 842
FaqI GGGAC 2 cut(s) 524, 963
FatI CATG 5 cut(s) 250, 670, 801, 820, 838
FauNDI CATATG 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 486, 699, 714
FokI GGATG 2 cut(s) 193, 641
FriOI GRGCYC 1 cut(s) 962
Fsp4HI GCNGC 3 cut(s) 486, 699, 714
FspBI CTAG 2 cut(s) 462, 705
GluI GCNGC 3 cut(s) 486, 699, 714
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 5 cut(s) 338, 427, 637, 742, 825
Hin1II CATG 5 cut(s) 254, 674, 805, 824, 842
HinfI GANTC 1 cut(s) 548
HphI GGTGA 1 cut(s) 961
Hpy166II GTNNAC 3 cut(s) 29, 92, 345
Hpy188I TCNGA 5 cut(s) 61, 123, 157, 316, 513
Hpy188III TCNNGA 5 cut(s) 15, 110, 520, 552, 705
Hpy8I GTNNAC 3 cut(s) 29, 92, 345
Hpy99I CGWCG 1 cut(s) 534
HpyAV CCTTC 7 cut(s) 388, 519, 618, 782, 855, 958, 1004
HpyCH4III ACNGT 4 cut(s) 33, 141, 475, 752
HpyCH4IV ACGT 2 cut(s) 52, 532
HpyCH4V TGCA 6 cut(s) 29, 56, 214, 365, 485, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 772
HpyF3I CTNAG 6 cut(s) 156, 327, 348, 353, 576, 982
HpySE526I ACGT 2 cut(s) 52, 532
Hsp92II CATG 5 cut(s) 254, 674, 805, 824, 842
Kzo9I GATC 6 cut(s) 112, 295, 557, 614, 707, 895
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 499, 957
LpnPI CCDG 9 cut(s) 237, 251, 381, 482, 505, 599, 603, 756, 797
Lsp1109I GCAGC 3 cut(s) 497, 710, 725
LweI GCATC 1 cut(s) 65
MaeI CTAG 2 cut(s) 462, 705
MaeII ACGT 2 cut(s) 52, 532
MaeIII GTNAC 3 cut(s) 647, 874, 1040
MalI GATC 6 cut(s) 114, 297, 559, 616, 709, 897
MboI GATC 6 cut(s) 112, 295, 557, 614, 707, 895
MboII GAAGA 6 cut(s) 89, 208, 403, 601, 902, 905
MflI RGATCY 2 cut(s) 614, 895
MhlI GDGCHC 2 cut(s) 31, 962
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 1 cut(s) 514
MluNI TGGCCA 1 cut(s) 338
MmeI TCCRAC 2 cut(s) 646, 814
Mox20I TGGCCA 1 cut(s) 338
MscI TGGCCA 1 cut(s) 338
MseI TTAA 3 cut(s) 192, 402, 737
MslI CAYNNNNRTG 1 cut(s) 825
Msp20I TGGCCA 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 772
NdeI CATATG 1 cut(s) 216
NdeII GATC 6 cut(s) 112, 295, 557, 614, 707, 895
NlaIII CATG 5 cut(s) 254, 674, 805, 824, 842
NmuCI GTSAC 2 cut(s) 874, 1040
NspI RCATGY 1 cut(s) 674
NspV TTCGAA 1 cut(s) 408
PceI AGGCCT 1 cut(s) 742
PciI ACATGT 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 3 cut(s) 487, 700, 715
PscI ACATGT 1 cut(s) 670
PsiI TTATAA 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 962
PspPI GGNCC 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 586
PsuI RGATCY 2 cut(s) 614, 895
RseI CAYNNNNRTG 1 cut(s) 825
SacI GAGCTC 1 cut(s) 962
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 192, 402, 737
SatI GCNGC 3 cut(s) 486, 699, 714
Sau3AI GATC 6 cut(s) 112, 295, 557, 614, 707, 895
Sau96I GGNCC 1 cut(s) 635
SduI GDGCHC 2 cut(s) 31, 962
SfaNI GCATC 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 2 cut(s) 401, 911
SmoI CTYRAG 2 cut(s) 401, 911
Sse9I AATT 1 cut(s) 514
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 1 cut(s) 612
SspMI CTAG 2 cut(s) 462, 705
SstI GAGCTC 1 cut(s) 962
StuI AGGCCT 1 cut(s) 742
TaaI ACNGT 4 cut(s) 33, 141, 475, 752
TaiI ACGT 2 cut(s) 55, 535
TaqI TCGA 4 cut(s) 258, 298, 408, 962
TasI AATT 1 cut(s) 514
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 3 cut(s) 192, 402, 737
Tru9I TTAA 3 cut(s) 192, 402, 737
TscAI CASTG 2 cut(s) 216, 757
TseFI GTSAC 2 cut(s) 874, 1040
TseI GCWGC 3 cut(s) 485, 698, 713
Tsp45I GTSAC 2 cut(s) 874, 1040
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 2 cut(s) 216, 757
Vha464I CTTAAG 1 cut(s) 401
VneI GTGCAC 1 cut(s) 27
XapI RAATTY 1 cut(s) 514
XbaI TCTAGA 1 cut(s) 704
XceI RCATGY 1 cut(s) 674
XspI CTAG 2 cut(s) 462, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.