pycom07g07540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000370
Physical Location & Seq
Forward (+)
6846627 .. 6847025
399 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07540.1

Sequence Viewer

Length: 399 bp
ATGACAGCTAACGAGTACTACAGAAGGTTTACTGATTTATTTCGCTATCACCCGGAGGTTGCTGCTAATCCAGTAGAGATGCTTTGTCGTTTTAGGTTAGGTACTCGAAAAAAGTGGCGTTCTATGGTGACCATGACTCCCTGTGCTACTTACCAGGAGTTTTATGAGATTCTGCTTCGAATTGAAGATTCAAAGAACATGCCCAATAATAGCGAGGAGGAAGAAGAAAAAGATGGTAACCAGAAGAAAAATGGTAAAGATAAGGGTCAATTGTCTCAGGGACCTCTTAAGACTCAAAGTTTTAAGAGAAGTGGTGCCAGTTCTAGTTCTTCTAGCAGGGGTTTGAGTTCCACTGGGCAGAGAATGAGTGGTAGATTTTCTGGAGGTCCTTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.08

Weight (kDa)

9.51

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AfaI GTAC 2 cut(s) 17, 103
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 185, 192
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 281, 386
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 41, 139
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 2 cut(s) 281, 386
BanI GGYRCC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 155
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 2 cut(s) 324, 333
BfmI CTRYAG 1 cut(s) 19
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 2 cut(s) 53, 155
Bme18I GGWCC 2 cut(s) 281, 386
BmgT120I GGNCC 2 cut(s) 281, 386
BmiI GGNNCC 2 cut(s) 282, 316
BmrFI CCNGG 2 cut(s) 53, 155
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bse1I ACTGG 3 cut(s) 71, 318, 358
BseBI CCWGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 3 cut(s) 71, 318, 358
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 282, 316
BspT104I TTCGAA 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 287
BsrI ACTGG 3 cut(s) 71, 318, 358
Bst2UI CCWGG 1 cut(s) 155
BstAFI CTTAAG 1 cut(s) 287
BstBI TTCGAA 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 276
BstEII GGTNACC 2 cut(s) 127, 236
BstMAI GTCTC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 202
BstPI GGTNACC 2 cut(s) 127, 236
BstSCI CCNGG 2 cut(s) 51, 153
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 281, 386
Csp6I GTAC 2 cut(s) 16, 102
CviAII CATG 2 cut(s) 133, 199
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
CviQI GTAC 2 cut(s) 16, 102
DdeI CTNAG 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 281, 386
Eco91I GGTNACC 2 cut(s) 127, 236
EcoO109I RGGNCCY 2 cut(s) 281, 386
EcoO65I GGTNACC 2 cut(s) 127, 236
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 136, 202
FaiI YATR 4 cut(s) 125, 134, 165, 200
FaqI GGGAC 1 cut(s) 294
FatI CATG 2 cut(s) 132, 198
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 324, 333
GluI GCNGC 1 cut(s) 63
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 136, 202
HinfI GANTC 4 cut(s) 136, 169, 188, 292
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 41, 139
Hpy166II GTNNAC 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 381
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 2 cut(s) 136, 202
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 69
MaeI CTAG 2 cut(s) 324, 333
MaeIII GTNAC 2 cut(s) 127, 236
MboII GAAGA 5 cut(s) 197, 233, 236, 256, 321
MfeI CAATTG 1 cut(s) 269
MluCI AATT 2 cut(s) 180, 269
MlyI GAGTC 2 cut(s) 130, 286
MnlI CCTC 5 cut(s) 49, 208, 211, 294, 377
MseI TTAA 2 cut(s) 288, 303
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 53, 155
MunI CAATTG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 155
NciI CCSGG 1 cut(s) 53
NlaIII CATG 2 cut(s) 136, 202
NlaIV GGNNCC 2 cut(s) 282, 316
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 202
NspV TTCGAA 1 cut(s) 178
PfeI GAWTC 2 cut(s) 169, 188
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 2 cut(s) 130, 286
PpsI GAGTC 2 cut(s) 130, 286
PpuMI RGGWCCY 2 cut(s) 281, 386
Psp5II RGGWCCY 2 cut(s) 281, 386
Psp6I CCWGG 1 cut(s) 153
PspEI GGTNACC 2 cut(s) 127, 236
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 282, 316
PspPI GGNCC 2 cut(s) 281, 386
PspPPI RGGWCCY 2 cut(s) 281, 386
RsaI GTAC 2 cut(s) 17, 103
RsaNI GTAC 2 cut(s) 16, 102
SaqAI TTAA 2 cut(s) 288, 303
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 2 cut(s) 281, 386
ScaI AGTACT 1 cut(s) 17
SchI GAGTC 2 cut(s) 130, 286
ScrFI CCNGG 2 cut(s) 53, 155
SetI ASST 7 cut(s) 10, 29, 60, 98, 103, 286, 388
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 2 cut(s) 281, 386
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 180, 269
SspMI CTAG 2 cut(s) 324, 333
StyD4I CCNGG 2 cut(s) 51, 153
TaqI TCGA 2 cut(s) 106, 178
TasI AATT 2 cut(s) 180, 269
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 2 cut(s) 169, 188
Tru1I TTAA 2 cut(s) 288, 303
Tru9I TTAA 2 cut(s) 288, 303
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 358
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 281, 386
XceI RCATGY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XspI CTAG 2 cut(s) 324, 333
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.