Rmu_sc0001866.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001866.1
OG0000370
Physical Location & Seq
Reverse (-)
43489 .. 44040
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001866.1_g000007.1.cds

Sequence Viewer

Length: 306 bp
atggcccgtctgcagcggaccccatctgatgctcttcatgaagttgtgaacctaggtgttggttctttgagttgcagtcatttgaggaatgagaacctctggattgaactctggtggggtgatgaggattgttttcggggaaaactgagtagagctcgaggtaggggcaggattcctccttctgttgaagagacattcgagaatgaggttgagacatcgagtgttgagctacccgttctacctgctgtggaggttgtcaatgttgtggatgccactcgtttgtcgacgttggctaaggagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

4.98

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 284
AciI CCGC 1 cut(s) 16
AgsI TTSAA 2 cut(s) 107, 188
AluBI AGCT 2 cut(s) 155, 229
AluI AGCT 2 cut(s) 155, 229
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 185, 206
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 13
AspA2I CCTAGG 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 4, 18
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 18
AvrII CCTAGG 1 cut(s) 52
BanII GRGCYC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 185, 206
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 1 cut(s) 14
BlnI CCTAGG 1 cut(s) 52
BlsI GCNGC 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 4, 18
BmiI GGNNCC 1 cut(s) 20
BmsI GCATC 2 cut(s) 19, 259
BplI GAGNNNNNCTC 2 cut(s) 139, 171
Bpu10I CCTNAGC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 185, 206
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 157
BspACI CCGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 39, 183
BstDEI CTNAG 2 cut(s) 146, 294
BstF5I GGATG 1 cut(s) 274
BstMAI GTCTC 2 cut(s) 185, 206
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 250
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 4, 18
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 5, 155, 229, 293
CviKI_1 RGCY 4 cut(s) 5, 155, 229, 293
DdeI CTNAG 2 cut(s) 146, 294
Eam1104I CTCTTC 2 cut(s) 39, 183
EarI CTCTTC 2 cut(s) 39, 183
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 41
FaiI YATR 1 cut(s) 39
FatI CATG 1 cut(s) 37
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 53
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 1 cut(s) 172
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 49, 285
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 3 cut(s) 38, 100, 199
Hpy8I GTNNAC 2 cut(s) 49, 285
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 13, 75
HpyF3I CTNAG 2 cut(s) 146, 294
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 1 cut(s) 41
LguI GCTCTTC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 85, 97, 154, 255
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 19, 259
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 287
MboII GAAGA 2 cut(s) 26, 200
MhlI GDGCHC 1 cut(s) 157
MnlI CCTC 7 cut(s) 78, 107, 118, 152, 186, 199, 244
MspA1I CMGCKG 1 cut(s) 16
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 156
PagI TCATGA 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 2 cut(s) 4, 18
PspXI VCTCGAGB 1 cut(s) 156
PstI CTGCAG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 157
SalI GTCGAC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 1 cut(s) 14
Sau96I GGNCC 2 cut(s) 4, 18
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 2 cut(s) 19, 259
SfcI CTRYAG 1 cut(s) 11
Sfr274I CTCGAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 18
SlaI CTCGAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 157
StyI CCWWGG 1 cut(s) 52
TaiI ACGT 1 cut(s) 290
TaqI TCGA 4 cut(s) 157, 198, 218, 284
TfiI GAWTC 1 cut(s) 172
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 26, 54
VpaK11BI GGWCC 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 156
XmaJI CCTAGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 284
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.