pycom12419g00150

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012419
Physical Location & Seq
Forward (+)
245322 .. 245876
555 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12419g00150.2

Sequence Viewer

Length: 462 bp
ATGTATAATCTGAAGTTGGATAAGTTCGAAGGCAACGAGGGTTTTGAGGGTGCGAAGCGGTGGCTAGAACATATTGAGAAGACCTTTCGTGAACTTCGTCGTTTATCTCCAGCGGAGAAGACTGATTGGGATGTATTCAGAGAGTTGTTCAGGAAAAGGTTTGTGCCTCCTGAGTATATTGACCGCAAAAAGCAGGAATTCACTGAGTTGAGACAGGGGAAGCTGACAGCAAATGAGTACTACCGGAGGTTTACTAATTTGTCTCGTTATCATCCGGATGTTGCTGGCAATCCGGCGGAGATACTTCGTCGTTTCCGTTTAGGCACTAAGAAAAAATGGCGTTCGATGGCGACCACTACCCCTTGTGACACCTACCAGGAGTTTTATGAGATTCTGTTGAGAATTGAGGATTTAGAGAACATGCCGAGCGAGAATGAAGAGGAAGAGAAAGACGGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

18.65

Weight (kDa)

6.78

Isoelectric Point (pI)

77.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 4 cut(s) 58, 113, 184, 296
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 205, 267
Aor13HI TCCGGA 1 cut(s) 274
ApoI RAATTY 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 86, 125
BccI CCATC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 205, 267
BfaI CTAG 1 cut(s) 65
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 377
BpiI GAAGAC 2 cut(s) 86, 125
BpmI CTGGAG 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 27
BsaWI WCCGGW 2 cut(s) 243, 274
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 1 cut(s) 377
BseGI GGATG 3 cut(s) 136, 271, 283
BseMII CTCAG 2 cut(s) 162, 195
BsiSI CCGG 3 cut(s) 244, 275, 293
BsmAI GTCTC 2 cut(s) 205, 267
Bsp119I TTCGAA 1 cut(s) 27
Bsp13I TCCGGA 1 cut(s) 274
BspACI CCGC 4 cut(s) 58, 113, 184, 296
BspCNI CTCAG 2 cut(s) 163, 196
BspEI TCCGGA 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 2 cut(s) 432, 438
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 171, 204, 327
BstF5I GGATG 3 cut(s) 136, 271, 283
BstMAI GTCTC 2 cut(s) 205, 267
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 375
BstV2I GAAGAC 2 cut(s) 86, 125
BtsCI GGATG 3 cut(s) 136, 271, 283
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 421
CviJI RGCY 2 cut(s) 64, 223
CviKI_1 RGCY 2 cut(s) 64, 223
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 171, 204, 327
Eam1104I CTCTTC 2 cut(s) 432, 438
EarI CTCTTC 2 cut(s) 432, 438
EciI GGCGGA 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 1 cut(s) 424
FaiI YATR 5 cut(s) 6, 72, 177, 387, 422
FatI CATG 1 cut(s) 420
FokI GGATG 3 cut(s) 143, 258, 290
FspBI CTAG 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 93
HapII CCGG 3 cut(s) 244, 275, 293
Hin1II CATG 1 cut(s) 424
HinfI GANTC 1 cut(s) 391
HpaII CCGG 3 cut(s) 244, 275, 293
Hpy166II GTNNAC 2 cut(s) 92, 252
Hpy188I TCNGA 2 cut(s) 12, 140
Hpy188III TCNNGA 4 cut(s) 89, 151, 170, 275
Hpy8I GTNNAC 2 cut(s) 92, 252
Hpy99I CGWCG 2 cut(s) 102, 312
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 455
HpyF3I CTNAG 3 cut(s) 171, 204, 327
Hsp92II CATG 1 cut(s) 424
Kpn2I TCCGGA 1 cut(s) 274
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 365, 455
MboII GAAGA 4 cut(s) 91, 130, 449, 455
MluCI AATT 3 cut(s) 197, 256, 402
MnlI CCTC 6 cut(s) 31, 40, 177, 240, 400, 433
MroI TCCGGA 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 3 cut(s) 244, 275, 293
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
NlaIII CATG 1 cut(s) 424
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 365
NspI RCATGY 1 cut(s) 424
NspV TTCGAA 1 cut(s) 27
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 94, 313
PfeI GAWTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 276
ScaI AGTACT 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 377
SetI ASST 5 cut(s) 86, 161, 225, 251, 374
SfuI TTCGAA 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 3 cut(s) 197, 256, 402
SsiI CCGC 4 cut(s) 58, 113, 184, 296
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 455
TaqI TCGA 2 cut(s) 27, 344
TasI AATT 3 cut(s) 197, 256, 402
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 1 cut(s) 391
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 208
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 424
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.