Prupe.1G169500_v2.0.a1

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000370
Physical Location & Seq
Reverse (-)
13880239 .. 13882018
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G169500.1

Sequence Viewer

Length: 1311 bp
ATGGCTGAATTTGGAAATGAGTTCAATGGAAATGTTGGAGTAATCTTAGCCATTCAGGATATGGCTTCAGCAATTAGAGAAAATAGTAACCAAGACCGCCGTCATGAAACTGAAGAAGATCGAGTTATGAGGATACAAGGACAATTTCGTAAGACAAAACCAACGATACTTAAAGGTGAACCAAATCCTATAGCAGCTGAAGAATGGTTAAGGCAAATTAAGAGAAAGATGGATAATCAAAGAATTCCAGAAGACATTAGAGTTGTTATTGCTTGTACCTATCTGGAAGGACAAGCATACCTTTGGTGGGAGTCGATTCTGAGTATGCCTAATACTGAAATTACAACTTGGGAGGCATTCGAAAGTATTTTTCAATTAAGCAAGTATGCTGATGTGGTTGATAGAGCACATATAGCAAAGCAAAGACCTGAAACTAAGAGAACTTGGGATTCAAGTAGCGGACAAATAAATAAACAGACAAGATTTAATACTCCTCAATGTCAATCAGAAAAAAAGTTCAGACCACCACTATGTTATTACTGCAAACAAGTGGGACATGTAAAGAGATTTTGTCCACAACTACAAAGATATCAAGGACCTCAATCTAACTGGGCAAGGCCAGTTACTAGGCAATCATCACAACGTCCAGGAGGACAATATTCTCAAATTAGACCAAGGGTCCCTGCAGTTGGAAAAAAATCTGGACAATTCACACAAGGAAGAGTATACGTTGTGGGAAATGTGATAGATCAAACTAAGCCTAAAACAATAGAAGCTATGTTTTTGGTATTCAACTCTTGGGCTAGAGTGTTAGTTGATTGTGGAGCTACACACTCTTTTATACCCACATCTTTTGCATCAACGCTTGAGTTAGAATATGAAAATATGAAACCTTCTTTGTTAATTGGATTTCCTTTGGGTGGTAGTCTAGAAGTTGATAAAGTATGTAGATCTTGCATGATAGAGATGTCGGGGCATAGAATTGTTGTTGATTTAATGGTATTGGAAATGTTGGAATATGATATTATTTTAGGAATGGATTGGCTTACACATTACCAAGAATTTAACGATGTTTTTCCAGAAGATTTGCATGGCTTACCTCCAGAGTGTGAAGTAGAGTTTGCTATAGAAATATACCCAGGTACAACACCTATTTATATACCTCCTAATCGCATGGCCCCAGCTGAACTGAAAGAACTTAACATACAACTCCAAGAATTACAAGCAAAGGAATATATCCATCCTAGTACTTCACCATGGGGTGCACCTGCTCTCTCTGTGAAAAAGAAAGATTTAACTCTTCGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

437

Amino Acids

50.08

Weight (kDa)

7.56

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1276
Acc36I ACCTGC 1 cut(s) 1276
AccI GTMKAC 1 cut(s) 726
AciI CCGC 2 cut(s) 97, 459
AcsI RAATTY 3 cut(s) 8, 243, 1061
AcuI CTGAAG 3 cut(s) 51, 132, 219
AfaI GTAC 3 cut(s) 277, 1144, 1249
AfiI CCNNNNNNNGG 3 cut(s) 307, 689, 920
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 4 cut(s) 25, 374, 453, 793
AhdI GACNNNNNGTC 1 cut(s) 677
AjnI CCWGG 2 cut(s) 646, 1138
AluBI AGCT 4 cut(s) 197, 776, 827, 1184
AluI AGCT 4 cut(s) 197, 776, 827, 1184
Alw21I GWGCWC 2 cut(s) 409, 1267
Alw44I GTGCAC 1 cut(s) 1263
AoxI GGCC 2 cut(s) 617, 1176
ApaLI GTGCAC 1 cut(s) 1263
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 3 cut(s) 8, 243, 1061
AspS9I GGNCC 3 cut(s) 596, 679, 1177
AsuHPI GGTGA 2 cut(s) 188, 1245
AsuII TTCGAA 2 cut(s) 360, 1303
AvaII GGWCC 2 cut(s) 596, 679
BaeGI GKGCMC 1 cut(s) 1267
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 409, 1267
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 223, 1248
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 2 cut(s) 648, 1140
BciVI GTATCC 1 cut(s) 126
BfaI CTAG 4 cut(s) 627, 804, 929, 1245
BfmI CTRYAG 3 cut(s) 189, 684, 1125
BfuAI ACCTGC 1 cut(s) 1276
BfuI GTATCC 1 cut(s) 126
BglII AGATCT 1 cut(s) 950
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 2 cut(s) 648, 1140
Bme18I GGWCC 2 cut(s) 596, 679
BmeRI GACNNNNNGTC 1 cut(s) 677
BmgT120I GGNCC 3 cut(s) 596, 679, 1177
BmiI GGNNCC 3 cut(s) 680, 681, 1179
BmrFI CCNGG 2 cut(s) 648, 1140
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 1 cut(s) 866
BmuI ACTGGG 1 cut(s) 619
BoxI GACNNNNGTC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 1086
Bpu14I TTCGAA 2 cut(s) 360, 1303
BpuEI CTTGAG 1 cut(s) 887
BsaJI CCNNGG 3 cut(s) 674, 1138, 1256
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 689, 920
Bse1I ACTGG 2 cut(s) 614, 620
BseBI CCWGG 2 cut(s) 648, 1140
BseDI CCNNGG 3 cut(s) 674, 1138, 1256
BseGI GGATG 1 cut(s) 1240
BseLI CCNNNNNNNGG 3 cut(s) 307, 689, 920
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 614, 620
BseRI GAGGAG 1 cut(s) 483
BseSI GKGCMC 1 cut(s) 1267
BseXI GCAGC 1 cut(s) 206
BseYI CCCAGC 1 cut(s) 1180
BshFI GGCC 2 cut(s) 619, 1178
BsiHKAI GWGCWC 2 cut(s) 409, 1267
BslFI GGGAC 2 cut(s) 567, 665
BslI CCNNNNNNNGG 3 cut(s) 307, 689, 920
BsmFI GGGAC 2 cut(s) 567, 665
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 2 cut(s) 619, 1178
Bsp119I TTCGAA 2 cut(s) 360, 1303
Bsp1286I GDGCHC 2 cut(s) 409, 1267
Bsp143I GATC 3 cut(s) 118, 748, 950
Bsp19I CCATGG 1 cut(s) 1256
BspACI CCGC 2 cut(s) 97, 459
BspANI GGCC 2 cut(s) 619, 1178
BspCNI CTCAG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 680, 681, 1179
BspMAI CTGCAG 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 1276
BspT104I TTCGAA 2 cut(s) 360, 1303
BsrI ACTGG 2 cut(s) 614, 620
BssECI CCNNGG 3 cut(s) 674, 1138, 1256
BssMI GATC 3 cut(s) 118, 748, 950
BssNAI GTATAC 1 cut(s) 727
BssT1I CCWWGG 2 cut(s) 674, 1256
Bst1107I GTATAC 1 cut(s) 727
Bst2UI CCWGG 2 cut(s) 648, 1140
Bst6I CTCTTC 2 cut(s) 715, 1305
BstBI TTCGAA 2 cut(s) 360, 1303
BstDEI CTNAG 4 cut(s) 46, 320, 435, 756
BstDSI CCRYGG 1 cut(s) 1256
BstF5I GGATG 1 cut(s) 1240
BstKTI GATC 3 cut(s) 121, 751, 953
BstMBI GATC 3 cut(s) 118, 748, 950
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 2 cut(s) 648, 1140
BstNSI RCATGY 1 cut(s) 560
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 646, 1138
BstSFI CTRYAG 3 cut(s) 189, 684, 1125
BstSLI GKGCMC 1 cut(s) 1267
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
BstZ17I GTATAC 1 cut(s) 727
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 2 cut(s) 619, 1178
BtgI CCRYGG 1 cut(s) 1256
BtsCI GGATG 1 cut(s) 1240
BveI ACCTGC 1 cut(s) 1276
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 3 cut(s) 596, 679, 1177
Csp6I GTAC 3 cut(s) 276, 1143, 1248
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CviAII CATG 6 cut(s) 104, 557, 958, 1091, 1174, 1257
CviQI GTAC 3 cut(s) 276, 1143, 1248
DdeI CTNAG 4 cut(s) 46, 320, 435, 756
DpnI GATC 3 cut(s) 120, 750, 952
DpnII GATC 3 cut(s) 118, 748, 950
DriI GACNNNNNGTC 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 715, 1305
Eam1105I GACNNNNNGTC 1 cut(s) 677
EarI CTCTTC 2 cut(s) 715, 1305
Eco130I CCWWGG 2 cut(s) 674, 1256
Eco32I GATATC 1 cut(s) 590
Eco47I GGWCC 2 cut(s) 596, 679
Eco57I CTGAAG 3 cut(s) 51, 132, 219
EcoO109I RGGNCCY 2 cut(s) 596, 679
EcoRI GAATTC 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 646, 1138
EcoRV GATATC 1 cut(s) 590
EcoT14I CCWWGG 2 cut(s) 674, 1256
ErhI CCWWGG 2 cut(s) 674, 1256
FaeI CATG 6 cut(s) 107, 560, 961, 1094, 1177, 1260
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 567, 665
FatI CATG 6 cut(s) 103, 556, 957, 1090, 1173, 1256
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 1227
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 4 cut(s) 627, 804, 929, 1245
GluI GCNGC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 1184
GsuI CTGGAG 1 cut(s) 1086
HaeIII GGCC 2 cut(s) 619, 1178
Hin1II CATG 6 cut(s) 107, 560, 961, 1094, 1177, 1260
HinfI GANTC 3 cut(s) 311, 316, 449
HphI GGTGA 2 cut(s) 188, 1245
Hpy166II GTNNAC 4 cut(s) 179, 575, 727, 1265
Hpy188I TCNGA 3 cut(s) 321, 508, 521
Hpy188III TCNNGA 8 cut(s) 56, 104, 248, 284, 702, 929, 1079, 1103
Hpy8I GTNNAC 4 cut(s) 179, 575, 727, 1265
HpyAV CCTTC 2 cut(s) 281, 903
HpyCH4IV ACGT 2 cut(s) 643, 729
HpyCH4V TGCA 6 cut(s) 543, 686, 857, 957, 1090, 1265
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 4 cut(s) 46, 320, 435, 756
HpySE526I ACGT 2 cut(s) 643, 729
Hsp92II CATG 6 cut(s) 107, 560, 961, 1094, 1177, 1260
KflI GGGWCCC 1 cut(s) 679
Kzo9I GATC 3 cut(s) 118, 748, 950
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 866
MaeI CTAG 4 cut(s) 627, 804, 929, 1245
MaeII ACGT 2 cut(s) 643, 729
MaeIII GTNAC 2 cut(s) 86, 622
MalI GATC 3 cut(s) 120, 750, 952
MboI GATC 3 cut(s) 118, 748, 950
MboII GAAGA 7 cut(s) 125, 128, 212, 263, 732, 1094, 1292
MflI RGATCY 1 cut(s) 950
MhlI GDGCHC 2 cut(s) 409, 1267
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 3 cut(s) 16, 670, 993
MnlI CCTC 7 cut(s) 123, 346, 504, 609, 644, 1110, 1173
MslI CAYNNNNRTG 1 cut(s) 529
MspA1I CMGCKG 2 cut(s) 197, 1184
MspR9I CCNGG 2 cut(s) 648, 1140
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 2 cut(s) 648, 1140
MwoI GCNNNNNNNGC 1 cut(s) 413
NcoI CCATGG 1 cut(s) 1256
NdeII GATC 3 cut(s) 118, 748, 950
NlaIII CATG 6 cut(s) 107, 560, 961, 1094, 1177, 1260
NlaIV GGNNCC 3 cut(s) 680, 681, 1179
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 2 cut(s) 360, 1303
PagI TCATGA 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 1276
PciI ACATGT 1 cut(s) 556
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 316, 449
PfoI TCCNGGA 1 cut(s) 646
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PpuMI RGGWCCY 2 cut(s) 596, 679
PscI ACATGT 1 cut(s) 556
PshAI GACNNNNGTC 1 cut(s) 99
Psp5II RGGWCCY 2 cut(s) 596, 679
Psp6I CCWGG 2 cut(s) 646, 1138
PspFI CCCAGC 1 cut(s) 1180
PspGI CCWGG 2 cut(s) 646, 1138
PspN4I GGNNCC 3 cut(s) 680, 681, 1179
PspPI GGNCC 3 cut(s) 596, 679, 1177
PspPPI RGGWCCY 2 cut(s) 596, 679
PsrI GAACNNNNNNTAC 2 cut(s) 1188, 1220
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 950
PvuII CAGCTG 2 cut(s) 197, 1184
RsaI GTAC 3 cut(s) 277, 1144, 1249
RsaNI GTAC 3 cut(s) 276, 1143, 1248
RseI CAYNNNNRTG 1 cut(s) 529
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 3 cut(s) 118, 748, 950
Sau96I GGNCC 3 cut(s) 596, 679, 1177
ScaI AGTACT 1 cut(s) 1249
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 648, 1140
SduI GDGCHC 2 cut(s) 409, 1267
SfaNI GCATC 1 cut(s) 866
SfcI CTRYAG 3 cut(s) 189, 684, 1125
SfuI TTCGAA 2 cut(s) 360, 1303
SinI GGWCC 2 cut(s) 596, 679
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
SsiI CCGC 2 cut(s) 97, 459
SspI AATATT 1 cut(s) 659
SspMI CTAG 4 cut(s) 627, 804, 929, 1245
StyD4I CCNGG 2 cut(s) 646, 1138
StyI CCWWGG 2 cut(s) 674, 1256
TaiI ACGT 2 cut(s) 646, 732
TaqI TCGA 4 cut(s) 121, 314, 360, 1303
TatI WGTACW 1 cut(s) 1247
TfiI GAWTC 2 cut(s) 316, 449
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 120, 894, 902
VneI GTGCAC 1 cut(s) 1263
VpaK11BI GGWCC 2 cut(s) 596, 679
XapI RAATTY 3 cut(s) 8, 243, 1061
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 4 cut(s) 627, 804, 929, 1245
ZrmI AGTACT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.