MD01G1095000.v1.1
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000370
Physical Location & Seq
Forward (+)
21006550 .. 21013035
6486 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1095000.v1.1.491

Sequence Viewer

Length: 1434 bp
ATGGCTCAAGCTTTTCAGGCTAATATCCGTCCTCCTCAGAGAACGCCCGTAGAGACGATGTATAATCTGAAACTGGAAACCTTTGAGGGAAATGAAGGTTATGAAGGGGCAGAAAAGTGGTTGGATCGAATTGAGCAGACCTTTCAAGTGATGCAAAGTCAGGGAAACCTGCCAGCTAATAGATGGGTGGAGACCACCACCTGGTTTTTGGGCCGTGAGCCAGCTGCGTGGTGGATAAATCAGTCGAGGCACATGACTCCTGAAAGGGCAGCCGAATGGGAGGTATTTAAGGAAAATTTTATGAAGAGATTTGTTCCTCCGGAATATATAGATCGCAAGAAACAGGAATTCACCAGTCTGAAGCAGAGAAATATGTCTGCACATGAGTACTACAGGAAGTTTACTGATTTATCCCGTTATGATTCTGATTTAGCGGGTAATCAAGCAGAAATGCTTCGTCGTTTCAAGCTAGGATCTAAGAAGAAGTACAGAACGTTTGCCAATGCACTTCCCTGTGCCGATTATCATGAGTATTTTGAGATTCTGGTCAGGATGGAAGACTCTGATAATCTTCCGGACAGTGAGGATGAAGAGGATAAGGGTAATGGTCAGAAGAAAAATGAGAAAGGTAAAGGTGTTTCCATTCCAGGACCTCGTCAGACGCAGAATTTCAAGAAAAGTGGAATGAGTTCGAGTTCTTCCAGTGGTGGATTTAGTGCCACAGGTCCGAGGAGAGGAGGTGGTAGGTTTGGTAATGGACCTAGATTTTCTGGTCAGAGAGGCTTTGGTAATACTGGTAGTTCGGGTCCTCCGTTATGTCGCCGTTGTAATTTCCGACATCATGGGGAATGTAGGAGAAGCAGTGGTGCATGCTTTACATGTGGTCAGACAGGACATAGAGCTATGTATTGTCCCCAGAATCAGCAGAGGCCCCAGCAGCCTGTTATGCCAACATCAGCACCGACTCAACAGAACTTTAATTCAGGCAGTTATGGCCAGGGTGGTCGTGGTGGTGCTTATCACTATCAGGGTGATGCTGCTCCTTATGCTCCGGGACAGTATCACTATTCCCAGGATCCTTATTTTCAGAGTGGATATTCTCAGGATCAGGGAGGTTATACTTCATATCCGTCTATGCCAGCTAGCGGATCTCAGTGGTATCAGGGGGGTCAGCCCCAACAGAGCGGAGTTGCTGCTAGTAGTACAGGGTCGTTTAGGCCGCCTGCCCAGGCAGGTCAAGGACGTACTCATCAGGGACGAGGTAACCAGAGTGGCAGAGGTCGTGGAGGACGACAGCCAGCTCAGGGACGCGTTAACCACATATCGCTGCAAGATGCTCAGAACCATCCAGACTTGATTATGGGTGGAACATTTAACGAGGACGAGCACATCCAGGGGCGTCAAGGGGGTTACGACCCGGCGACATACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

478

Amino Acids

53.37

Weight (kDa)

9.26

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 73 - 155 3.1e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 177, 1223
AccB7I CCANNNNNTGG 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 1185
AccII CGCG 1 cut(s) 1311
AccIII TCCGGA 2 cut(s) 319, 574
AciI CCGC 4 cut(s) 434, 1146, 1185, 1220
AclI AACGTT 1 cut(s) 494
AclWI GGATC 6 cut(s) 132, 481, 1070, 1083, 1113, 1156
AcoI YGGCCR 1 cut(s) 994
AcsI RAATTY 3 cut(s) 295, 347, 667
AcuI CTGAAG 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 1399
AfaI GTAC 4 cut(s) 389, 488, 1204, 1246
AfiI CCNNNNNNNGG 4 cut(s) 201, 734, 1145, 1304
AflIII ACRYGT 2 cut(s) 878, 1309
AgsI TTSAA 3 cut(s) 146, 466, 673
AjnI CCWGG 6 cut(s) 200, 646, 996, 1071, 1227, 1392
AluBI AGCT 7 cut(s) 11, 176, 224, 469, 902, 1142, 1301
AluI AGCT 7 cut(s) 11, 176, 224, 469, 902, 1142, 1301
Alw21I GWGCWC 1 cut(s) 1389
Alw26I GTCTC 2 cut(s) 47, 185
AlwI GGATC 6 cut(s) 132, 481, 1070, 1083, 1113, 1156
Aor13HI TCCGGA 2 cut(s) 319, 574
AoxI GGCC 4 cut(s) 211, 929, 994, 1217
ApeKI GCWGC 6 cut(s) 224, 269, 937, 1037, 1193, 1327
ApoI RAATTY 3 cut(s) 295, 347, 667
Asp700I GAANNNNTTC 2 cut(s) 453, 688
AspS9I GGNCC 6 cut(s) 211, 650, 725, 758, 806, 930
AsuC2I CCSGG 2 cut(s) 1053, 1418
AsuHPI GGTGA 2 cut(s) 343, 1043
AsuNHI GCTAGC 1 cut(s) 1142
AvaII GGWCC 4 cut(s) 650, 725, 758, 806
BalI TGGCCA 1 cut(s) 996
BamHI GGATCC 1 cut(s) 1075
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 1389
BbvI GCAGC 6 cut(s) 211, 281, 949, 1024, 1180, 1314
BccI CCATC 3 cut(s) 177, 547, 1353
BceAI ACGGC 2 cut(s) 198, 807
BciT130I CCWGG 6 cut(s) 202, 648, 998, 1073, 1229, 1394
BcnI CCSGG 2 cut(s) 1053, 1418
BcoDI GTCTC 2 cut(s) 47, 185
BfaI CTAG 4 cut(s) 470, 762, 1143, 1197
BfmI CTRYAG 1 cut(s) 391
BfuAI ACCTGC 2 cut(s) 177, 1223
BisI GCNGC 7 cut(s) 225, 270, 938, 1038, 1194, 1220, 1328
BlsI GCNGC 7 cut(s) 226, 271, 939, 1039, 1195, 1221, 1329
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 8 cut(s) 202, 648, 998, 1053, 1073, 1229, 1394, 1418
Bme18I GGWCC 4 cut(s) 650, 725, 758, 806
BmgT120I GGNCC 6 cut(s) 211, 650, 725, 758, 806, 930
BmiI GGNNCC 3 cut(s) 807, 932, 1077
BmrFI CCNGG 8 cut(s) 202, 648, 998, 1053, 1073, 1229, 1394, 1418
BmsI GCATC 3 cut(s) 141, 1024, 1324
BmtI GCTAGC 1 cut(s) 1146
BpiI GAAGAC 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 1302
BpuMI CCSGG 2 cut(s) 1053, 1418
BsaHI GRCGYC 1 cut(s) 1399
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 5 cut(s) 728, 997, 1071, 1227, 1393
BsaWI WCCGGW 2 cut(s) 319, 574
BsaXI ACNNNNNCTCC 4 cut(s) 724, 754, 847, 877
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 734, 1145, 1304
Bse1I ACTGG 5 cut(s) 78, 354, 702, 799, 1429
BseAI TCCGGA 2 cut(s) 319, 574
BseBI CCWGG 6 cut(s) 202, 648, 998, 1073, 1229, 1394
BseDI CCNNGG 5 cut(s) 728, 997, 1071, 1227, 1393
BseGI GGATG 4 cut(s) 558, 592, 1345, 1389
BseLI CCNNNNNNNGG 4 cut(s) 201, 734, 1145, 1304
BseMII CTCAG 5 cut(s) 50, 1115, 1166, 1316, 1352
BseNI ACTGG 5 cut(s) 78, 354, 702, 799, 1429
BseRI GAGGAG 3 cut(s) 24, 745, 750
BseXI GCAGC 6 cut(s) 211, 281, 949, 1024, 1180, 1314
BseYI CCCAGC 1 cut(s) 933
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 1311
BshFI GGCC 4 cut(s) 213, 931, 996, 1219
BsiHKAI GWGCWC 1 cut(s) 1389
BsiSI CCGG 4 cut(s) 320, 575, 1052, 1418
BslFI GGGAC 4 cut(s) 897, 1068, 1269, 1320
BslI CCNNNNNNNGG 4 cut(s) 201, 734, 1145, 1304
BsmAI GTCTC 2 cut(s) 47, 185
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 4 cut(s) 897, 1068, 1269, 1320
BsnI GGCC 4 cut(s) 213, 931, 996, 1219
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 1389
Bsp13I TCCGGA 2 cut(s) 319, 574
Bsp143I GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
BspACI CCGC 4 cut(s) 434, 1146, 1185, 1220
BspANI GGCC 4 cut(s) 213, 931, 996, 1219
BspCNI CTCAG 5 cut(s) 49, 1114, 1165, 1315, 1351
BspEI TCCGGA 2 cut(s) 319, 574
BspFNI CGCG 1 cut(s) 1311
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 807, 932, 1077
BspMI ACCTGC 2 cut(s) 177, 1223
BspOI GCTAGC 1 cut(s) 1146
BspPI GGATC 6 cut(s) 132, 481, 1070, 1083, 1113, 1156
BspTNI GGTCTC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 1185
BsrI ACTGG 5 cut(s) 78, 354, 702, 799, 1429
BssECI CCNNGG 5 cut(s) 728, 997, 1071, 1227, 1393
BssMI GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
BssNI GRCGYC 1 cut(s) 1399
Bst2UI CCWGG 6 cut(s) 202, 648, 998, 1073, 1229, 1394
Bst4CI ACNGT 2 cut(s) 581, 1059
Bst6I CTCTTC 2 cut(s) 299, 585
BstACI GRCGYC 1 cut(s) 1399
BstC8I GCNNGC 7 cut(s) 174, 222, 871, 1140, 1144, 1224, 1299
BstDEI CTNAG 6 cut(s) 36, 477, 1101, 1152, 1302, 1338
BstEII GGTNACC 1 cut(s) 1262
BstF5I GGATG 4 cut(s) 558, 592, 1345, 1389
BstFNI CGCG 1 cut(s) 1311
BstKTI GATC 6 cut(s) 127, 334, 476, 1078, 1108, 1151
BstMAI GTCTC 2 cut(s) 47, 185
BstMBI GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
BstMWI GCNNNNNNNGC 5 cut(s) 17, 937, 946, 993, 1046
BstNI CCWGG 6 cut(s) 202, 648, 998, 1073, 1229, 1394
BstNSI RCATGY 2 cut(s) 873, 882
BstPI GGTNACC 1 cut(s) 1262
BstSCI CCNGG 8 cut(s) 200, 646, 996, 1051, 1071, 1227, 1392, 1416
BstSFI CTRYAG 1 cut(s) 391
BstUI CGCG 1 cut(s) 1311
BstV1I GCAGC 6 cut(s) 211, 281, 949, 1024, 1180, 1314
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 3 cut(s) 473, 1075, 1148
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 3 cut(s) 473, 1075, 1148
BsuRI GGCC 4 cut(s) 213, 931, 996, 1219
BtsCI GGATG 4 cut(s) 558, 592, 1345, 1389
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 4 cut(s) 586, 709, 868, 1160
BveI ACCTGC 2 cut(s) 177, 1223
Cac8I GCNNGC 7 cut(s) 174, 222, 871, 1140, 1144, 1224, 1299
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 6 cut(s) 211, 650, 725, 758, 806, 930
CseI GACGC 3 cut(s) 670, 1317, 1388
CsiI ACCWGGT 1 cut(s) 200
Csp6I GTAC 4 cut(s) 388, 487, 1203, 1245
CspCI CAANNNNNGTGG 2 cut(s) 661, 696
CviAII CATG 6 cut(s) 253, 383, 527, 842, 870, 879
CviQI GTAC 4 cut(s) 388, 487, 1203, 1245
DdeI CTNAG 6 cut(s) 36, 477, 1101, 1152, 1302, 1338
DpnI GATC 6 cut(s) 126, 333, 475, 1077, 1107, 1150
DpnII GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
EaeI YGGCCR 1 cut(s) 994
Eam1104I CTCTTC 2 cut(s) 299, 585
EarI CTCTTC 2 cut(s) 299, 585
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 4 cut(s) 650, 725, 758, 806
Eco57I CTGAAG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 1262
EcoO109I RGGNCCY 3 cut(s) 650, 806, 930
EcoO65I GGTNACC 1 cut(s) 1262
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 6 cut(s) 200, 646, 996, 1071, 1227, 1392
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 6 cut(s) 256, 386, 530, 845, 873, 882
FaqI GGGAC 4 cut(s) 897, 1068, 1269, 1320
FatI CATG 6 cut(s) 252, 382, 526, 841, 869, 878
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 7 cut(s) 225, 270, 938, 1038, 1194, 1220, 1328
FokI GGATG 4 cut(s) 565, 599, 1332, 1376
Fsp4HI GCNGC 7 cut(s) 225, 270, 938, 1038, 1194, 1220, 1328
FspBI CTAG 4 cut(s) 470, 762, 1143, 1197
GluI GCNGC 7 cut(s) 225, 270, 938, 1038, 1194, 1220, 1328
GsaI CCCAGC 1 cut(s) 937
HaeIII GGCC 4 cut(s) 213, 931, 996, 1219
HapII CCGG 4 cut(s) 320, 575, 1052, 1418
HgaI GACGC 3 cut(s) 670, 1317, 1388
Hin1I GRCGYC 1 cut(s) 1399
Hin1II CATG 6 cut(s) 256, 386, 530, 845, 873, 882
HincII GTYRAC 1 cut(s) 1315
HindII GTYRAC 1 cut(s) 1315
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 6 cut(s) 256, 422, 541, 560, 919, 964
HpaI GTTAAC 1 cut(s) 1315
HpaII CCGG 4 cut(s) 320, 575, 1052, 1418
HphI GGTGA 2 cut(s) 343, 1043
Hpy166II GTNNAC 2 cut(s) 402, 1315
Hpy188III TCNNGA 8 cut(s) 260, 320, 527, 550, 575, 673, 1103, 1349
Hpy8I GTNNAC 2 cut(s) 402, 1315
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 2 cut(s) 89, 98
HpyCH4III ACNGT 2 cut(s) 581, 1059
HpyCH4IV ACGT 2 cut(s) 494, 1243
HpyCH4V TGCA 5 cut(s) 154, 380, 506, 869, 1330
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 937, 946, 993, 1046
HpyF3I CTNAG 6 cut(s) 36, 477, 1101, 1152, 1302, 1338
HpySE526I ACGT 2 cut(s) 494, 1243
Hsp92I GRCGYC 1 cut(s) 1399
Hsp92II CATG 6 cut(s) 256, 386, 530, 845, 873, 882
Kpn2I TCCGGA 2 cut(s) 319, 574
KspAI GTTAAC 1 cut(s) 1315
Kzo9I GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
LmnI GCTCC 2 cut(s) 1045, 1054
Lsp1109I GCAGC 6 cut(s) 211, 281, 949, 1024, 1180, 1314
LweI GCATC 3 cut(s) 141, 1024, 1324
MabI ACCWGGT 1 cut(s) 200
MaeI CTAG 4 cut(s) 470, 762, 1143, 1197
MaeII ACGT 2 cut(s) 494, 1243
MaeIII GTNAC 2 cut(s) 1262, 1409
MalI GATC 6 cut(s) 126, 333, 475, 1077, 1107, 1150
MbiI CCGCTC 1 cut(s) 1185
MboI GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
MboII GAAGA 7 cut(s) 316, 493, 563, 569, 602, 625, 690
MflI RGATCY 3 cut(s) 473, 1075, 1148
MhlI GDGCHC 1 cut(s) 1389
MlsI TGGCCA 1 cut(s) 996
MluCI AATT 6 cut(s) 129, 295, 347, 667, 829, 979
MluI ACGCGT 1 cut(s) 1309
MluNI TGGCCA 1 cut(s) 996
MlyI GAGTC 3 cut(s) 250, 554, 958
MmeI TCCRAC 2 cut(s) 102, 859
Mox20I TGGCCA 1 cut(s) 996
MroI TCCGGA 2 cut(s) 319, 574
MroXI GAANNNNTTC 2 cut(s) 453, 688
MscI TGGCCA 1 cut(s) 996
MseI TTAA 4 cut(s) 288, 978, 1314, 1374
MslI CAYNNNNRTG 1 cut(s) 1429
Msp20I TGGCCA 1 cut(s) 996
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 4 cut(s) 320, 575, 1052, 1418
MspR9I CCNGG 8 cut(s) 202, 648, 998, 1053, 1073, 1229, 1394, 1418
MvaI CCWGG 6 cut(s) 202, 648, 998, 1073, 1229, 1394
MvnI CGCG 1 cut(s) 1311
MwoI GCNNNNNNNGC 5 cut(s) 17, 937, 946, 993, 1046
NciI CCSGG 2 cut(s) 1053, 1418
NdeII GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
NheI GCTAGC 1 cut(s) 1142
NlaIII CATG 6 cut(s) 256, 386, 530, 845, 873, 882
NlaIV GGNNCC 3 cut(s) 807, 932, 1077
NspI RCATGY 2 cut(s) 873, 882
PaeI GCATGC 1 cut(s) 873
PagI TCATGA 1 cut(s) 526
PciI ACATGT 1 cut(s) 878
PcsI WCGNNNNNNNCGW 2 cut(s) 809, 1288
PdmI GAANNNNTTC 2 cut(s) 453, 688
PfeI GAWTC 3 cut(s) 422, 541, 919
PflFI GACNNNGTC 1 cut(s) 654
PflMI CCANNNNNTGG 1 cut(s) 201
PfoI TCCNGGA 2 cut(s) 646, 1051
PkrI GCNGC 7 cut(s) 226, 271, 939, 1039, 1195, 1221, 1329
PleI GAGTC 3 cut(s) 250, 554, 958
PpsI GAGTC 3 cut(s) 250, 554, 958
PpuMI RGGWCCY 2 cut(s) 650, 806
PscI ACATGT 1 cut(s) 878
Psp1406I AACGTT 1 cut(s) 494
Psp5II RGGWCCY 2 cut(s) 650, 806
Psp6I CCWGG 6 cut(s) 200, 646, 996, 1071, 1227, 1392
PspEI GGTNACC 1 cut(s) 1262
PspFI CCCAGC 1 cut(s) 933
PspGI CCWGG 6 cut(s) 200, 646, 996, 1071, 1227, 1392
PspN4I GGNNCC 3 cut(s) 807, 932, 1077
PspPI GGNCC 6 cut(s) 211, 650, 725, 758, 806, 930
PspPPI RGGWCCY 2 cut(s) 650, 806
PsuI RGATCY 3 cut(s) 473, 1075, 1148
PsyI GACNNNGTC 1 cut(s) 654
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 4 cut(s) 389, 488, 1204, 1246
RsaNI GTAC 4 cut(s) 388, 487, 1203, 1245
RseI CAYNNNNRTG 1 cut(s) 1429
SaqAI TTAA 4 cut(s) 288, 978, 1314, 1374
SatI GCNGC 7 cut(s) 225, 270, 938, 1038, 1194, 1220, 1328
Sau3AI GATC 6 cut(s) 124, 331, 473, 1075, 1105, 1148
Sau96I GGNCC 6 cut(s) 211, 650, 725, 758, 806, 930
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 3 cut(s) 250, 554, 958
ScrFI CCNGG 8 cut(s) 202, 648, 998, 1053, 1073, 1229, 1394, 1418
SduI GDGCHC 1 cut(s) 1389
SexAI ACCWGGT 1 cut(s) 200
SfaNI GCATC 3 cut(s) 141, 1024, 1324
SfcI CTRYAG 1 cut(s) 391
SinI GGWCC 4 cut(s) 650, 725, 758, 806
SmiMI CAYNNNNRTG 1 cut(s) 1429
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SphI GCATGC 1 cut(s) 873
Sse9I AATT 6 cut(s) 129, 295, 347, 667, 829, 979
SsiI CCGC 4 cut(s) 434, 1146, 1185, 1220
SspMI CTAG 4 cut(s) 470, 762, 1143, 1197
StyD4I CCNGG 8 cut(s) 200, 646, 996, 1051, 1071, 1227, 1392, 1416
TaaI ACNGT 2 cut(s) 581, 1059
TaiI ACGT 2 cut(s) 497, 1246
TaqI TCGA 3 cut(s) 127, 245, 692
TasI AATT 6 cut(s) 129, 295, 347, 667, 829, 979
TatI WGTACW 3 cut(s) 387, 486, 1202
TauI GCSGC 1 cut(s) 1222
TfiI GAWTC 3 cut(s) 422, 541, 919
Tru1I TTAA 4 cut(s) 288, 978, 1314, 1374
Tru9I TTAA 4 cut(s) 288, 978, 1314, 1374
TscAI CASTG 4 cut(s) 586, 709, 868, 1160
TseI GCWGC 6 cut(s) 224, 269, 937, 1037, 1193, 1327
TspDTI ATGAA 5 cut(s) 108, 117, 317, 603, 1113
TspGWI ACGGA 3 cut(s) 17, 801, 1119
TspRI CASTG 4 cut(s) 586, 709, 868, 1160
Tth111I GACNNNGTC 1 cut(s) 654
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 4 cut(s) 650, 725, 758, 806
XapI RAATTY 3 cut(s) 295, 347, 667
XceI RCATGY 2 cut(s) 873, 882
XcmI CCANNNNNNNNNTGG 4 cut(s) 180, 205, 228, 1004
XmnI GAANNNNTTC 2 cut(s) 453, 688
XspI CTAG 4 cut(s) 470, 762, 1143, 1197
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.