pycom17g08210

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000370
Physical Location & Seq
Reverse (-)
6120145 .. 6120983
839 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08210.1

Sequence Viewer

Length: 798 bp
ATGATTTTGGTGTCTTCTGTCAGAACTATGCCGCCTCGTCGGGAACCCCGTCGCTCTTCCGAGCCTAGTTTCCCCGATATTACTCAGTTGGGGGAAGCTTTTGCTACAGCCCTTCAGGCAGTGATGCGCCCTCCCCAGAGGACTCCTCTGGAGACTATGTACAATTTGAAGCTGGATAAGTTTAAGGGCAGTAAGGGACCCGAGAGCGCAGAGCGCTGGCTAGAACACATAGAGAAGACCTTCCGGGTGCTGCATAATCAGGGGAACTTGCCTATGGAGAGGTGGGTCGAGACGACCGCTTGGTTTCTGGATACGGAGTCGGCCGCTTGGTGGGAGCAGGAGCTTCGTAGGTTGACTCCGGATCAGAGGGTTGATTGGAATGTTTTTACGAGGTTGTTTAGGAGAAGGTATGTTCCCCCTGAGTACATTGACCGTAAGAAACAGGAGTTTTCCGAACTGAAACAGCGGAAGATGTCAGCGAATGAGTACTACCGTAAGTTTACGGACTTGTCCCGTTATCACCCTGATGTCGCTGGTAATCCAGCGGAGATGCTCCGTCTTTTCCGTCTGGGCACCAGGAAGAAGTGGCGTTCTATGGCGTCTACGGTCCACAGCGAGACTTACCGGGACTTCTATGAGATACTGTTGAGGATCGAGGATTCTGAGAATATGTCAAGCGATACTGATGAAGAGAAGGACGGCAACCAGAAGAAAGATGACAAAGGCAAAGGTCAGGCATCGCTCGGGCCCCGTCAGACTCAGAACTTCAAGAGAGGTGGAGCTAGGTCGTGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

266

Amino Acids

31.5

Weight (kDa)

9.71

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 101 - 189 5e-14 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 572
AccI GTMKAC 1 cut(s) 602
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 5 cut(s) 32, 297, 324, 466, 545
AclWI GGATC 2 cut(s) 369, 659
AcoI YGGCCR 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 3 cut(s) 161, 425, 488
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 2 cut(s) 169, 769
AjnI CCWGG 1 cut(s) 575
AluBI AGCT 4 cut(s) 98, 172, 343, 782
AluI AGCT 4 cut(s) 98, 172, 343, 782
Alw26I GTCTC 3 cut(s) 146, 284, 611
AlwI GGATC 2 cut(s) 369, 659
Ama87I CYCGRG 2 cut(s) 200, 743
Aor13HI TCCGGA 1 cut(s) 358
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 2 cut(s) 321, 746
ApaI GGGCCC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 3 cut(s) 129, 209, 216
AspS9I GGNCC 4 cut(s) 197, 607, 746, 747
AsuC2I CCSGG 2 cut(s) 245, 626
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 2 cut(s) 200, 743
AvaII GGWCC 2 cut(s) 197, 607
BaeGI GKGCMC 2 cut(s) 575, 750
BanI GGYRCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 750
BbsI GAAGAC 2 cut(s) 6, 242
BbvI GCAGC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 715
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 1 cut(s) 577
BciVI GTATCC 1 cut(s) 304
BcnI CCSGG 2 cut(s) 245, 626
BcoDI GTCTC 3 cut(s) 146, 284, 611
BfaI CTAG 3 cut(s) 66, 221, 783
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 217
BfuI GTATCC 1 cut(s) 304
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 3 cut(s) 32, 251, 324
BlsI GCNGC 3 cut(s) 33, 252, 325
BmcAI AGTACT 1 cut(s) 488
Bme1390I CCNGG 3 cut(s) 245, 577, 626
Bme18I GGWCC 2 cut(s) 197, 607
BmeT110I CYCGRG 2 cut(s) 200, 743
BmgT120I GGNCC 4 cut(s) 197, 607, 746, 747
BmiI GGNNCC 6 cut(s) 45, 198, 199, 574, 748, 749
BmrFI CCNGG 3 cut(s) 245, 577, 626
BmsI GCATC 3 cut(s) 114, 540, 746
BpiI GAAGAC 2 cut(s) 6, 242
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 245, 626
BsaHI GRCGYC 1 cut(s) 599
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 577
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 98, 411, 654, 773
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 2 cut(s) 575, 750
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 237
Bsh1285I CGRYCG 2 cut(s) 297, 324
BshFI GGCC 2 cut(s) 323, 748
BshNI GGYRCC 1 cut(s) 572
BsiEI CGRYCG 2 cut(s) 297, 324
BsiHKCI CYCGRG 2 cut(s) 200, 743
BsiSI CCGG 3 cut(s) 244, 359, 625
BslFI GGGAC 3 cut(s) 210, 496, 641
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 3 cut(s) 146, 284, 611
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 3 cut(s) 210, 496, 641
BsnI GGCC 2 cut(s) 323, 748
BsoBI CYCGRG 2 cut(s) 200, 743
Bsp120I GGGCCC 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 575, 750
Bsp13I TCCGGA 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 2 cut(s) 361, 651
BspACI CCGC 5 cut(s) 32, 297, 324, 466, 545
BspANI GGCC 2 cut(s) 323, 748
BspCNI CTCAG 4 cut(s) 97, 412, 655, 772
BspEI TCCGGA 1 cut(s) 358
BspLI GGNNCC 6 cut(s) 45, 198, 199, 574, 748, 749
BspPI GGATC 2 cut(s) 369, 659
BspQI GCTCTTC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 572
BsrGI TGTACA 1 cut(s) 159
BssMI GATC 2 cut(s) 361, 651
BssNI GRCGYC 1 cut(s) 599
Bst2UI CCWGG 1 cut(s) 577
Bst4CI ACNGT 4 cut(s) 434, 494, 607, 645
Bst6I CTCTTC 2 cut(s) 61, 684
BstACI GRCGYC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 4 cut(s) 84, 420, 663, 759
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 3 cut(s) 129, 209, 216
BstKTI GATC 2 cut(s) 364, 654
BstMAI GTCTC 3 cut(s) 146, 284, 611
BstMBI GATC 2 cut(s) 361, 651
BstMCI CGRYCG 2 cut(s) 297, 324
BstMWI GCNNNNNNNGC 2 cut(s) 116, 213
BstNI CCWGG 1 cut(s) 577
BstSCI CCNGG 3 cut(s) 243, 575, 624
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 2 cut(s) 575, 750
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 2 cut(s) 6, 242
BstZI CGGCCG 1 cut(s) 321
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 323, 748
BtgZI GCGATG 1 cut(s) 723
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 3 cut(s) 129, 209, 216
Cfr13I GGNCC 4 cut(s) 197, 607, 746, 747
CseI GACGC 1 cut(s) 588
Csp6I GTAC 3 cut(s) 160, 424, 487
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviJI RGCY 9 cut(s) 64, 98, 110, 172, 220, 323, 343, 748, 782
CviKI_1 RGCY 9 cut(s) 64, 98, 110, 172, 220, 323, 343, 748, 782
CviQI GTAC 3 cut(s) 160, 424, 487
DdeI CTNAG 4 cut(s) 84, 420, 663, 759
DpnI GATC 2 cut(s) 363, 653
DpnII GATC 2 cut(s) 361, 651
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 61, 684
EarI CTCTTC 2 cut(s) 61, 684
EclXI CGGCCG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 750
Eco47I GGWCC 2 cut(s) 197, 607
Eco47III AGCGCT 1 cut(s) 215
Eco52I CGGCCG 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 200, 743
EcoO109I RGGNCCY 2 cut(s) 197, 747
EcoRII CCWGG 1 cut(s) 575
EcoT38I GRGCYC 1 cut(s) 750
Esp3I CGTCTC 1 cut(s) 284
FaiI YATR 9 cut(s) 29, 158, 230, 255, 275, 411, 596, 636, 671
FaqI GGGAC 3 cut(s) 210, 496, 641
FblI GTMKAC 1 cut(s) 602
Fnu4HI GCNGC 3 cut(s) 32, 251, 324
FriOI GRGCYC 1 cut(s) 750
Fsp4HI GCNGC 3 cut(s) 32, 251, 324
FspBI CTAG 3 cut(s) 66, 221, 783
GlaI GCGC 3 cut(s) 128, 208, 215
GluI GCNGC 3 cut(s) 32, 251, 324
GsuI CTGGAG 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 2 cut(s) 323, 748
HapII CCGG 3 cut(s) 244, 359, 625
HgaI GACGC 1 cut(s) 588
HhaI GCGC 3 cut(s) 129, 209, 216
Hin1I GRCGYC 1 cut(s) 599
Hin6I GCGC 3 cut(s) 127, 207, 214
HinP1I GCGC 3 cut(s) 127, 207, 214
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 5 cut(s) 142, 317, 355, 659, 757
HpaII CCGG 3 cut(s) 244, 359, 625
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 4 cut(s) 354, 501, 603, 610
Hpy188I TCNGA 7 cut(s) 23, 61, 366, 454, 664, 756, 762
Hpy188III TCNNGA 6 cut(s) 41, 149, 289, 308, 359, 769
Hpy8I GTNNAC 4 cut(s) 354, 501, 603, 610
Hpy99I CGWCG 2 cut(s) 42, 54
HpyAV CCTTC 4 cut(s) 122, 250, 399, 688
HpyCH4III ACNGT 4 cut(s) 434, 494, 607, 645
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 213
HpyF3I CTNAG 4 cut(s) 84, 420, 663, 759
Hsp92I GRCGYC 1 cut(s) 599
HspAI GCGC 3 cut(s) 127, 207, 214
KflI GGGWCCC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 361, 651
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 4 cut(s) 334, 340, 558, 779
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 3 cut(s) 114, 540, 746
MaeI CTAG 3 cut(s) 66, 221, 783
MalI GATC 2 cut(s) 363, 653
MboI GATC 2 cut(s) 361, 651
MboII GAAGA 7 cut(s) 6, 48, 247, 481, 592, 701, 721
MhlI GDGCHC 2 cut(s) 575, 750
MluCI AATT 1 cut(s) 163
MlyI GAGTC 4 cut(s) 136, 326, 349, 751
MroI TCCGGA 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 466, 545
MspI CCGG 3 cut(s) 244, 359, 625
MspR9I CCNGG 3 cut(s) 245, 577, 626
MvaI CCWGG 1 cut(s) 577
MwoI GCNNNNNNNGC 2 cut(s) 116, 213
NciI CCSGG 2 cut(s) 245, 626
NdeII GATC 2 cut(s) 361, 651
NlaIV GGNNCC 6 cut(s) 45, 198, 199, 574, 748, 749
PciSI GCTCTTC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 659
PkrI GCNGC 3 cut(s) 33, 252, 325
PleI GAGTC 4 cut(s) 136, 325, 349, 751
PpsI GAGTC 4 cut(s) 136, 325, 349, 751
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 575
PspGI CCWGG 1 cut(s) 575
PspN4I GGNNCC 6 cut(s) 45, 198, 199, 574, 748, 749
PspOMI GGGCCC 1 cut(s) 746
PspPI GGNCC 4 cut(s) 197, 607, 746, 747
PspPPI RGGWCCY 1 cut(s) 197
RsaI GTAC 3 cut(s) 161, 425, 488
RsaNI GTAC 3 cut(s) 160, 424, 487
RseI CAYNNNNRTG 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 3 cut(s) 32, 251, 324
Sau3AI GATC 2 cut(s) 361, 651
Sau96I GGNCC 4 cut(s) 197, 607, 746, 747
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 4 cut(s) 136, 326, 349, 751
ScrFI CCNGG 3 cut(s) 245, 577, 626
SduI GDGCHC 2 cut(s) 575, 750
SfaNI GCATC 3 cut(s) 114, 540, 746
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 2 cut(s) 197, 607
SmiMI CAYNNNNRTG 1 cut(s) 525
Sse9I AATT 1 cut(s) 163
SsiI CCGC 5 cut(s) 32, 297, 324, 466, 545
SspMI CTAG 3 cut(s) 66, 221, 783
StyD4I CCNGG 3 cut(s) 243, 575, 624
TaaI ACNGT 4 cut(s) 434, 494, 607, 645
TaqI TCGA 2 cut(s) 288, 654
TasI AATT 1 cut(s) 163
TatI WGTACW 3 cut(s) 159, 423, 486
TauI GCSGC 2 cut(s) 34, 326
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 126
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 702
TspGWI ACGGA 4 cut(s) 329, 518, 545, 554
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 197, 607
XmiI GTMKAC 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 3 cut(s) 66, 221, 783
ZrmI AGTACT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.