pycom11g15460
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000370
Physical Location & Seq
Forward (+)
16149177 .. 16149638
462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g15460.1

Sequence Viewer

Length: 462 bp
ATGCCGCCTCGTCGGGAACCCCGTCGCTCTTCTGAGCCTATGTTCCCCGATATTACTCAGTTGGGGGAAGCTTTTGCTACAGCCCTTCAGGCAGTGATGCGCCCTCCCCAGAGGACTCCTCTGGAGACCATGTACAATCTGAAGTTGGATAAGTTTAAGGGCAGTGAGGGACCCGAGAGCGCAGAGCGCTGGCTAGAACACATAGAGAAGACTTTCCGGGTGCTACATAATCAGGGGAACTTGCCTATGGAGAGGTGGGTCGAGACGACCGCTTGGTTTCTGGATACGGAGTCGGCAGCTTGGTGGGAGCAGGAGCTTCGTAGGTTGACTCCGGATCAGAGGATTGATTGGAACGTGTTTACGGGGTTGTTTAGGAGAAGATATGTACCCCCTGAGTACATTGACCGCAAGAAGCAGGAGTTTTCCGAACTGAAACAGCGGAAGATGTCAGCGAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

154

Amino Acids

18.38

Weight (kDa)

8.01

Isoelectric Point (pI)

79.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 152 1.4e-07 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 4 cut(s) 5, 270, 406, 439
AclWI GGATC 1 cut(s) 342
AcuI CTGAAG 2 cut(s) 71, 161
AfaI GTAC 3 cut(s) 134, 387, 398
AfeI AGCGCT 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 354
AluBI AGCT 3 cut(s) 71, 299, 316
AluI AGCT 3 cut(s) 71, 299, 316
Alw26I GTCTC 2 cut(s) 119, 257
AlwI GGATC 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 331
Aor51HI AGCGCT 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 3 cut(s) 102, 182, 189
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciVI GTATCC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 119, 257
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 190
BfuI GTATCC 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 2 cut(s) 5, 297
BlsI GCNGC 2 cut(s) 6, 298
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 18, 171, 172
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
BseAI TCCGGA 1 cut(s) 331
BseMII CTCAG 3 cut(s) 24, 71, 384
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 2 cut(s) 217, 332
BslFI GGGAC 1 cut(s) 183
BsmAI GTCTC 2 cut(s) 119, 257
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 4 cut(s) 5, 270, 406, 439
BspCNI CTCAG 3 cut(s) 25, 70, 385
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 18, 171, 172
BspPI GGATC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 132
BssMI GATC 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 33, 57, 393
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 3 cut(s) 102, 182, 189
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 119, 257
BstMBI GATC 1 cut(s) 334
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 89, 186
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 215
BsuI GTATCC 1 cut(s) 277
BtsI GCAGTG 2 cut(s) 99, 169
BtsIMutI CAGTG 2 cut(s) 99, 169
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 3 cut(s) 102, 182, 189
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 3 cut(s) 133, 386, 397
CviAII CATG 1 cut(s) 130
CviJI RGCY 6 cut(s) 37, 71, 83, 193, 299, 316
CviKI_1 RGCY 6 cut(s) 37, 71, 83, 193, 299, 316
CviQI GTAC 3 cut(s) 133, 386, 397
DdeI CTNAG 3 cut(s) 33, 57, 393
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 170
Eco47III AGCGCT 1 cut(s) 188
Eco57I CTGAAG 2 cut(s) 71, 161
Eco88I CYCGRG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 1 cut(s) 133
FaiI YATR 6 cut(s) 41, 131, 203, 228, 248, 384
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 5, 297
Fsp4HI GCNGC 2 cut(s) 5, 297
FspBI CTAG 1 cut(s) 194
GlaI GCGC 3 cut(s) 101, 181, 188
GluI GCNGC 2 cut(s) 5, 297
GsuI CTGGAG 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 190
HapII CCGG 2 cut(s) 217, 332
HhaI GCGC 3 cut(s) 102, 182, 189
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 3 cut(s) 100, 180, 187
HinP1I GCGC 3 cut(s) 100, 180, 187
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 115, 290, 328
HpaII CCGG 2 cut(s) 217, 332
Hpy166II GTNNAC 2 cut(s) 327, 360
Hpy188I TCNGA 4 cut(s) 34, 141, 339, 427
Hpy188III TCNNGA 5 cut(s) 14, 122, 262, 281, 332
Hpy8I GTNNAC 2 cut(s) 327, 360
Hpy99I CGWCG 2 cut(s) 15, 27
HpyAV CCTTC 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 186
HpyF3I CTNAG 3 cut(s) 33, 57, 393
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 3 cut(s) 100, 180, 187
KflI GGGWCCC 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 331
Kzo9I GATC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 307, 313
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 354
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 4 cut(s) 21, 220, 390, 454
MlyI GAGTC 3 cut(s) 109, 299, 322
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 7 cut(s) 18, 105, 114, 129, 160, 246, 333
MroI TCCGGA 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 2 cut(s) 217, 332
MspR9I CCNGG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 89, 186
NciI CCSGG 1 cut(s) 218
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 3 cut(s) 18, 171, 172
PciSI GCTCTTC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 6, 298
PleI GAGTC 3 cut(s) 109, 298, 322
PpsI GAGTC 3 cut(s) 109, 298, 322
PpuMI RGGWCCY 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 18, 171, 172
PspPI GGNCC 1 cut(s) 170
PspPPI RGGWCCY 1 cut(s) 170
RsaI GTAC 3 cut(s) 134, 387, 398
RsaNI GTAC 3 cut(s) 133, 386, 397
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 5, 297
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 3 cut(s) 109, 299, 322
ScrFI CCNGG 1 cut(s) 218
SetI ASST 6 cut(s) 73, 257, 301, 318, 326, 357
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 170
SsiI CCGC 4 cut(s) 5, 270, 406, 439
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 261
TatI WGTACW 2 cut(s) 132, 396
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 99, 169
TseI GCWGC 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 2 cut(s) 99, 169
VpaK11BI GGWCC 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.