FvH4_4g16178
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000370
Physical Location & Seq
Forward (+)
20156150 .. 20158621
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16178.t1

Sequence Viewer

Length: 1443 bp
ATGACCAATAGAAGGAACCCACCTGTTGACGCGGAAGATTTTGTCGAAGCCTTCACCAGAAGGATGGAGGCAAATCAAGTCGGCGGGAGGCTAGGACGACTAGTGACACACATAAGGAATTTAGGGGCAAAGAAGTTTGTTGGAGGGAAACCTCACGAGGCTGAAGAATGGATCTACAATTTGGAAATCCACTTTGAAATGAGGGATTGTACCCAAGTGGAGTTACGAAAAGTGGCTACTTGCCTCTTAGAAGGTGATGCTCGTTTCTGGTGGGACACAGTTAAACGTGTCACACTCCCTGCTGCATTGGAACTCATGGATTGGACTGCCTTCAAAGAAAAATTTCTAGAAAAGTTCTTTCCACAAGTTGAGAAGGACAAGAAAGAATTAGAGTTCATTCAACTTACCCAAGGAAAAATGCCTGTGATTGAGTATGAAACAAAATTCACTAAACTTTCTCGTTTTGCTCCTCACATGGTAGATACTGACGATAAGAAAGCAAGACGTTTCATTGGAGGACTGAATTCCAACATTCGAAGAATGGTCACTCAACGTGGAATCACTTACGAGGAAGCTGTGGATAAAGCCTTAACTCAAGAAGAGGAAAACCAAAAGTATCGAATGGAGAAAGAACGAGAGAATAGTTTTCGAGGAAAAAGGAGTCATCCAATGCCTAACCAGAAAGGCGGACAACCATGGAAGCAACAAAAAGGGAGAGACGCGTTTCGGAAGCCGACAACATCAACTGAGAAGGGGAAAGAGGTGTTTAGAGGGCCAATTCGGTGTTATAATTGTGGAGGGTCTGGACACATGTCTAATGCTTGTCCAAAGCCACGTCGCCTCCCAGGATCATGTTTCAATTGTGGTAAGATGGGGCACTTCTCTAATAAGTGTGATGCTCCGAAACAAACAAACAATCCAGCACCTCGTCCAGTCCAGCTAAATACCATAGCTTTTGAGAACATGGTGATGGAAGCGGATTACACACATCACTTGGAGACTACCTTACAAGTTCTTAGGGAACACAAGCTATATGCGAAATTTGAGAAGTGCGACTTTTGGCAACACCAAGTGAAGTTCTTAGGCCACGTAGTTTCTCAAGCTGGAATAGCAATGGATCCTGCAAAGATTGAAGCTATGTTAGAATGGAAAGCTCCTACCACTCCAACAGAAGTACGAAGCTTTCTTGGCCTTGCTGGGTATTATCGGAGATTCATAGAAGGTTTTTCAAAAATTGCTCTCCCAATGACGAGGTTGACTCGGAAAAATGTGAAGTACATATGGGATGACAATTGTGAACGAGCATTCCAGAAGCTAAAGGAAAGGCTCACAACAGCACCCATTCTCACCATTCCGGAAAGTGGAGTTCCTTTCGTCATATATATAGCGATGCATCACATCAAGGACTCGGTTGTGTTCTCATGCAAAACGGAAAGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

481

Amino Acids

55.75

Weight (kDa)

9.41

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 51 - 205 1.7e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 77 - 175 3e-21 Retrotransposon gag protein
zf-CCHC PF00098 261 - 277 9.1e-06 Zinc knuckle
RT_RNaseH_2 PF17919 428 - 462 6.2e-06 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 789
AccII CGCG 2 cut(s) 32, 722
AccIII TCCGGA 1 cut(s) 1354
AciI CCGC 4 cut(s) 32, 84, 687, 977
AclWI GGATC 4 cut(s) 179, 856, 1112, 1125
AcsI RAATTY 5 cut(s) 118, 341, 443, 523, 1040
AcuI CTGAAG 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 1072
AfaI GTAC 3 cut(s) 211, 1176, 1277
AfiI CCNNNNNNNGG 2 cut(s) 12, 1361
AflIII ACRYGT 3 cut(s) 286, 720, 810
AgsI TTSAA 6 cut(s) 197, 334, 401, 859, 1133, 1230
AhlI ACTAGT 1 cut(s) 100
AjiI CACGTC 1 cut(s) 836
AjnI CCWGG 1 cut(s) 844
AloI GAACNNNNNNTCC 2 cut(s) 1290, 1322
AluBI AGCT 9 cut(s) 575, 940, 953, 1030, 1103, 1136, 1154, 1182, 1315
AluI AGCT 9 cut(s) 575, 940, 953, 1030, 1103, 1136, 1154, 1182, 1315
Alw26I GTCTC 2 cut(s) 711, 992
AlwI GGATC 4 cut(s) 179, 856, 1112, 1125
Aor13HI TCCGGA 1 cut(s) 1354
AoxI GGCC 3 cut(s) 773, 1084, 1189
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 5 cut(s) 118, 341, 443, 523, 1040
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 773
AsuHPI GGTGA 4 cut(s) 46, 266, 979, 1339
AsuII TTCGAA 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 879
BamHI GGATCC 1 cut(s) 1117
BauI CACGAG 1 cut(s) 155
BbvI GCAGC 1 cut(s) 289
BccI CCATC 3 cut(s) 58, 865, 964
BciT130I CCWGG 1 cut(s) 846
BcoDI GTCTC 2 cut(s) 711, 992
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 3 cut(s) 92, 101, 347
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 846
BmgBI CACGTC 1 cut(s) 836
BmgT120I GGNCC 1 cut(s) 773
BmiI GGNNCC 2 cut(s) 17, 1119
BmrFI CCNGG 1 cut(s) 846
BmsI GCATC 4 cut(s) 247, 886, 1380, 1402
BoxI GACNNNNGTC 1 cut(s) 811
BplI GAGNNNNNCTC 2 cut(s) 1243, 1275
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 2 cut(s) 579, 1083
BsaAI YACGTR 1 cut(s) 1090
BsaJI CCNNGG 3 cut(s) 409, 695, 844
BsaWI WCCGGW 1 cut(s) 1354
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 1361
Bse1I ACTGG 1 cut(s) 932
Bse3DI GCAATG 1 cut(s) 1119
BseAI TCCGGA 1 cut(s) 1354
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 3 cut(s) 409, 695, 844
BseGI GGATG 3 cut(s) 69, 664, 1291
BseLI CCNNNNNNNGG 2 cut(s) 12, 1361
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 1 cut(s) 932
BseRI GAGGAG 1 cut(s) 459
BseSI GKGCMC 1 cut(s) 879
BseXI GCAGC 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 1196
Bsh1236I CGCG 2 cut(s) 32, 722
BshFI GGCC 3 cut(s) 775, 1086, 1191
BsiSI CCGG 1 cut(s) 1355
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 12, 1361
BsmAI GTCTC 2 cut(s) 711, 992
BsmBI CGTCTC 1 cut(s) 711
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 1304
BsnI GGCC 3 cut(s) 775, 1086, 1191
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 879
Bsp13I TCCGGA 1 cut(s) 1354
Bsp143I GATC 3 cut(s) 171, 848, 1117
Bsp19I CCATGG 1 cut(s) 695
BspACI CCGC 4 cut(s) 32, 84, 687, 977
BspANI GGCC 3 cut(s) 775, 1086, 1191
BspCNI CTCAG 1 cut(s) 739
BspEI TCCGGA 1 cut(s) 1354
BspFNI CGCG 2 cut(s) 32, 722
BspLI GGNNCC 2 cut(s) 17, 1119
BspPI GGATC 4 cut(s) 179, 856, 1112, 1125
BspT104I TTCGAA 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 1119
BsrI ACTGG 1 cut(s) 932
BssECI CCNNGG 3 cut(s) 409, 695, 844
BssMI GATC 3 cut(s) 171, 848, 1117
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 2 cut(s) 409, 695
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 594
BstBAI YACGTR 1 cut(s) 1090
BstBI TTCGAA 1 cut(s) 535
BstDEI CTNAG 4 cut(s) 247, 747, 1016, 1081
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 3 cut(s) 69, 664, 1291
BstFNI CGCG 2 cut(s) 32, 722
BstKTI GATC 3 cut(s) 174, 851, 1120
BstMAI GTCTC 2 cut(s) 711, 992
BstMBI GATC 3 cut(s) 171, 848, 1117
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1188
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 1 cut(s) 814
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 1 cut(s) 844
BstSLI GKGCMC 1 cut(s) 879
BstUI CGCG 2 cut(s) 32, 722
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 2 cut(s) 171, 1117
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 2 cut(s) 171, 1117
BsuRI GGCC 3 cut(s) 775, 1086, 1191
BtgI CCRYGG 1 cut(s) 695
BtgZI GCGATG 1 cut(s) 1403
BtrI CACGTC 1 cut(s) 836
BtsCI GGATG 3 cut(s) 69, 664, 1291
Cfr13I GGNCC 1 cut(s) 773
CseI GACGC 2 cut(s) 38, 728
Csp6I GTAC 3 cut(s) 210, 1175, 1276
CviAII CATG 7 cut(s) 316, 475, 696, 811, 852, 964, 1422
CviQI GTAC 3 cut(s) 210, 1175, 1276
DdeI CTNAG 4 cut(s) 247, 747, 1016, 1081
DpnI GATC 3 cut(s) 173, 850, 1119
DpnII GATC 3 cut(s) 171, 848, 1117
DraIII CACNNNGTG 1 cut(s) 1072
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
EciI GGCGGA 1 cut(s) 702
Eco130I CCWWGG 2 cut(s) 409, 695
Eco57I CTGAAG 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 2 cut(s) 409, 695
EcoT22I ATGCAT 1 cut(s) 1395
ErhI CCWWGG 2 cut(s) 409, 695
Esp3I CGTCTC 1 cut(s) 711
FaeI CATG 7 cut(s) 319, 478, 699, 814, 855, 967, 1425
FalI AAGNNNNNCTT 2 cut(s) 1040, 1072
FaqI GGGAC 1 cut(s) 287
FatI CATG 7 cut(s) 315, 474, 695, 810, 851, 963, 1421
FauI CCCGC 1 cut(s) 77
FauNDI CATATG 1 cut(s) 1280
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 3 cut(s) 76, 651, 1298
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 3 cut(s) 92, 101, 347
GluI GCNGC 1 cut(s) 303
GsaI CCCAGC 1 cut(s) 1200
HaeIII GGCC 3 cut(s) 775, 1086, 1191
HapII CCGG 1 cut(s) 1355
HgaI GACGC 2 cut(s) 38, 728
Hin1II CATG 7 cut(s) 319, 478, 699, 814, 855, 967, 1425
HincII GTYRAC 2 cut(s) 28, 1257
HindII GTYRAC 2 cut(s) 28, 1257
HindIII AAGCTT 1 cut(s) 1180
HinfI GANTC 5 cut(s) 558, 661, 1212, 1258, 1406
HpaII CCGG 1 cut(s) 1355
HphI GGTGA 4 cut(s) 46, 266, 979, 1339
Hpy166II GTNNAC 3 cut(s) 28, 1257, 1298
Hpy188I TCNGA 4 cut(s) 729, 903, 1209, 1263
Hpy188III TCNNGA 6 cut(s) 155, 347, 596, 804, 1309, 1355
Hpy8I GTNNAC 3 cut(s) 28, 1257, 1298
Hpy99I CGWCG 1 cut(s) 840
HpyAV CCTTC 8 cut(s) 6, 54, 61, 245, 340, 367, 745, 1214
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 5 cut(s) 286, 505, 553, 835, 1089
HpyCH4V TGCA 4 cut(s) 305, 1124, 1393, 1425
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1188
HpyF3I CTNAG 4 cut(s) 247, 747, 1016, 1081
HpySE526I ACGT 5 cut(s) 286, 505, 553, 835, 1089
Hsp92II CATG 7 cut(s) 319, 478, 699, 814, 855, 967, 1425
Kpn2I TCCGGA 1 cut(s) 1354
Kzo9I GATC 3 cut(s) 171, 848, 1117
LmnI GCTCC 3 cut(s) 472, 904, 1159
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 4 cut(s) 247, 886, 1380, 1402
MaeI CTAG 3 cut(s) 92, 101, 347
MaeII ACGT 5 cut(s) 286, 505, 553, 835, 1089
MaeIII GTNAC 4 cut(s) 103, 222, 289, 544
MalI GATC 3 cut(s) 173, 850, 1119
MboI GATC 3 cut(s) 171, 848, 1117
MboII GAAGA 4 cut(s) 47, 176, 549, 611
MfeI CAATTG 2 cut(s) 859, 1291
MflI RGATCY 2 cut(s) 171, 1117
MhlI GDGCHC 1 cut(s) 879
MluI ACGCGT 1 cut(s) 720
MlyI GAGTC 3 cut(s) 670, 1252, 1400
MmeI TCCRAC 3 cut(s) 121, 552, 1190
Mph1103I ATGCAT 1 cut(s) 1395
MroI TCCGGA 1 cut(s) 1354
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 282, 590
MslI CAYNNNNRTG 1 cut(s) 968
MspI CCGG 1 cut(s) 1355
MspR9I CCNGG 1 cut(s) 846
MunI CAATTG 2 cut(s) 859, 1291
Mva1269I GAATGC 1 cut(s) 1304
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 2 cut(s) 32, 722
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1188
NcoI CCATGG 1 cut(s) 695
NdeI CATATG 1 cut(s) 1280
NdeII GATC 3 cut(s) 171, 848, 1117
NlaIII CATG 7 cut(s) 319, 478, 699, 814, 855, 967, 1425
NlaIV GGNNCC 2 cut(s) 17, 1119
NmuCI GTSAC 3 cut(s) 103, 289, 544
NsiI ATGCAT 1 cut(s) 1395
NspI RCATGY 1 cut(s) 814
NspV TTCGAA 1 cut(s) 535
PciI ACATGT 1 cut(s) 810
PctI GAATGC 1 cut(s) 1304
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 558, 1212
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 3 cut(s) 669, 1252, 1400
PpsI GAGTC 3 cut(s) 669, 1252, 1400
Ppu21I YACGTR 1 cut(s) 1090
PscI ACATGT 1 cut(s) 810
PshAI GACNNNNGTC 1 cut(s) 811
PsiI TTATAA 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 1196
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 2 cut(s) 17, 1119
PspPI GGNCC 1 cut(s) 773
PsuI RGATCY 2 cut(s) 171, 1117
RsaI GTAC 3 cut(s) 211, 1176, 1277
RsaNI GTAC 3 cut(s) 210, 1175, 1276
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 2 cut(s) 282, 590
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 3 cut(s) 171, 848, 1117
Sau96I GGNCC 1 cut(s) 773
SchI GAGTC 3 cut(s) 670, 1252, 1400
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 1 cut(s) 879
SfaNI GCATC 4 cut(s) 247, 886, 1380, 1402
SfuI TTCGAA 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 968
SmlI CTYRAG 2 cut(s) 594, 1098
SmoI CTYRAG 2 cut(s) 594, 1098
SpeI ACTAGT 1 cut(s) 100
SsiI CCGC 4 cut(s) 32, 84, 687, 977
SspMI CTAG 3 cut(s) 92, 101, 347
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 2 cut(s) 409, 695
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 5 cut(s) 289, 508, 556, 838, 1092
TaqI TCGA 4 cut(s) 45, 535, 619, 649
TatI WGTACW 1 cut(s) 1275
TfiI GAWTC 2 cut(s) 558, 1212
Tru1I TTAA 2 cut(s) 282, 590
Tru9I TTAA 2 cut(s) 282, 590
TseFI GTSAC 3 cut(s) 103, 289, 544
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 3 cut(s) 103, 289, 544
TspDTI ATGAA 4 cut(s) 385, 450, 499, 1204
XapI RAATTY 5 cut(s) 118, 341, 443, 523, 1040
XbaI TCTAGA 1 cut(s) 346
XceI RCATGY 1 cut(s) 814
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 3 cut(s) 92, 101, 347
Zsp2I ATGCAT 1 cut(s) 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.