Rh7CG196500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000370
Physical Location & Seq
Forward (+)
17336504 .. 17337002
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG196500.1

Sequence Viewer

Length: 330 bp
ATGTCCTGGAGATTTTTACTTACGAGAGTCTTAGAGATGCCGAAGGCACGTTCTGAGGCTGCTCGTCGTGAGCAGAAAGAAGTGAATGAGGTTGATGAACCTGAGGTTACTGAGGATGCAAGAAGTGCATTTCGTGCTATTGAGGATTTAGCCGAGGTGGTATCAACCCATATTCATACCTCAGAACTACTGAAGCAAACTTCACCTGCTAATTCTTCTTTTTCAGAATTTCGTAAGCATCATCCTCCTAACTTTAAAGGAAATCCTGATCCTTTGGAGGCTGAGGCTTGGATTGAGAAACTCGAGAAGATTTATGATGTTCTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.6

Weight (kDa)

5.23

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 212
AjnI CCWGG 1 cut(s) 5
AlwI GGATC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 302
AxyI CCTNAGG 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 7
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 3 cut(s) 27, 106, 247
BpmI CTGGAG 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 121, 241
BseMII CTCAG 5 cut(s) 45, 93, 102, 195, 273
BseXI GCAGC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 302
Bsp143I GATC 1 cut(s) 268
BspCNI CTCAG 5 cut(s) 46, 94, 103, 194, 274
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 7
BstAPI GCANNNNNTGC 2 cut(s) 125, 134
BstDEI CTNAG 6 cut(s) 31, 54, 102, 111, 181, 282
BstF5I GGATG 2 cut(s) 121, 241
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 125, 134
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 121, 241
BveI ACCTGC 1 cut(s) 214
CviJI RGCY 4 cut(s) 59, 152, 281, 287
CviKI_1 RGCY 4 cut(s) 59, 152, 281, 287
DdeI CTNAG 6 cut(s) 31, 54, 102, 111, 181, 282
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DraI TTTAAA 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 5
FaiI YATR 3 cut(s) 171, 177, 315
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 128, 228
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 28
HinfI GANTC 1 cut(s) 27
HphI GGTGA 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 55, 184, 226
Hpy188III TCNNGA 3 cut(s) 68, 266, 304
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 119, 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 134
HpyF3I CTNAG 6 cut(s) 31, 54, 102, 111, 181, 282
HpySE526I ACGT 1 cut(s) 49
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 4 cut(s) 19, 114, 219, 279
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 3 cut(s) 27, 106, 247
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 207, 319
MluCI AATT 2 cut(s) 211, 227
MlyI GAGTC 1 cut(s) 36
MseI TTAA 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 125, 134
NdeII GATC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 302
PaqCI CACCTGC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 5
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 7
SetI ASST 8 cut(s) 52, 93, 103, 108, 159, 182, 208, 328
SfaNI GCATC 3 cut(s) 27, 106, 247
Sfr274I CTCGAG 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 211, 227
StyD4I CCNGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 303
TasI AATT 2 cut(s) 211, 227
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 111, 164
XapI RAATTY 1 cut(s) 227
XhoI CTCGAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.