pycom05g06900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000370
Physical Location & Seq
Reverse (-)
9740892 .. 9741500
609 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06900.1

Sequence Viewer

Length: 516 bp
ATGTATAATCTGAAGTTGGATAAGTTCGAAGGCAACGAGGGTTTTGAGGGTGCGGAGCGGTGGCTAGAACATATTGAGAAGACCTTTCGTGAACTTCGTCGTTTATCTCCAACTGAGAAGACTGATTGGGATGTATTCAGAGAGTTGTTCAGGAAAAGGTTTGTGCCTCCTGAGTATGTTGACCGCAAAAAGCAAGAATTCACTGAGTTGAGACAGGGGAAGTTGACAGCAAATGAGTACTACCGGAGGTTTACTGATCTGTCTCGCTATCATCCAGATGTTGCTGGCAATCCGGCGGAGATGCTTCGTCGTTTCCGCTTAGGCACTAAGAAGAAGTGGCGTTCGATGACGACCACTACCCCCTGTGACACCTACCAGGAGTTTTATGAGATTCTGTTGAGAATTGAGGATTCAGAGAACATGCCGAGCGAGAGGGAAGAGGAAGAGAAAGACGGTAATCAGAGGAAGGATGATAAGGGCAAGGGTCAGGCGTCGCTCGGACCTCGTAAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

20.69

Weight (kDa)

8.54

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 29 - 108 1.9e-13 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 58
AciI CCGC 5 cut(s) 53, 58, 184, 296, 316
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 491
AfaI GTAC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 205, 267
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 500
AsuII TTCGAA 1 cut(s) 27
AvaII GGWCC 1 cut(s) 500
BbsI GAAGAC 2 cut(s) 86, 125
BciT130I CCWGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 205, 267
BfaI CTAG 2 cut(s) 65, 514
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 500
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 86, 125
Bpu10I CCTNAGC 1 cut(s) 319
Bpu14I TTCGAA 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 243
BseBI CCWGG 1 cut(s) 377
BseGI GGATG 3 cut(s) 136, 271, 475
BseMII CTCAG 3 cut(s) 105, 162, 195
BsiSI CCGG 2 cut(s) 244, 293
BsmAI GTCTC 2 cut(s) 205, 267
Bsp119I TTCGAA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 5 cut(s) 53, 58, 184, 296, 316
BspCNI CTCAG 3 cut(s) 106, 163, 196
BspT104I TTCGAA 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 58
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 2 cut(s) 432, 438
BstACI GRCGYC 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 5 cut(s) 114, 171, 204, 319, 327
BstF5I GGATG 3 cut(s) 136, 271, 475
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 205, 267
BstMBI GATC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 375
BstV2I GAAGAC 2 cut(s) 86, 125
BtsCI GGATG 3 cut(s) 136, 271, 475
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 421
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 5 cut(s) 114, 171, 204, 319, 327
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 432, 438
EarI CTCTTC 2 cut(s) 432, 438
EciI GGCGGA 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 500
Eco57I CTGAAG 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 1 cut(s) 424
FaiI YATR 5 cut(s) 6, 72, 177, 387, 422
FatI CATG 1 cut(s) 420
FokI GGATG 3 cut(s) 143, 258, 482
FspBI CTAG 2 cut(s) 65, 514
HapII CCGG 2 cut(s) 244, 293
HgaI GACGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 491
Hin1II CATG 1 cut(s) 424
HincII GTYRAC 2 cut(s) 181, 225
HindII GTYRAC 2 cut(s) 181, 225
HinfI GANTC 2 cut(s) 391, 410
HpaII CCGG 2 cut(s) 244, 293
Hpy166II GTNNAC 4 cut(s) 92, 181, 225, 252
Hpy188I TCNGA 5 cut(s) 12, 140, 415, 462, 500
Hpy188III TCNNGA 4 cut(s) 89, 151, 170, 275
Hpy8I GTNNAC 4 cut(s) 92, 181, 225, 252
Hpy99I CGWCG 3 cut(s) 102, 312, 496
HpyAV CCTTC 2 cut(s) 23, 460
HpyCH4III ACNGT 1 cut(s) 455
HpyF3I CTNAG 5 cut(s) 114, 171, 204, 319, 327
Hsp92I GRCGYC 1 cut(s) 491
Hsp92II CATG 1 cut(s) 424
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 55
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 65, 514
MaeIII GTNAC 1 cut(s) 365
MalI GATC 1 cut(s) 258
MbiI CCGCTC 1 cut(s) 58
MboI GATC 1 cut(s) 256
MboII GAAGA 5 cut(s) 91, 130, 343, 449, 455
MluCI AATT 2 cut(s) 197, 402
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 9 cut(s) 31, 40, 177, 240, 400, 426, 433, 456, 513
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 2 cut(s) 244, 293
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 424
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 365
NspI RCATGY 1 cut(s) 424
NspV TTCGAA 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 94
PfeI GAWTC 2 cut(s) 391, 410
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspPI GGNCC 1 cut(s) 500
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 276
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 500
ScaI AGTACT 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 377
SetI ASST 6 cut(s) 86, 161, 251, 374, 505, 515
SfaNI GCATC 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 2 cut(s) 197, 402
SsiI CCGC 5 cut(s) 53, 58, 184, 296, 316
SspMI CTAG 2 cut(s) 65, 514
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 455
TaqI TCGA 2 cut(s) 27, 344
TasI AATT 2 cut(s) 197, 402
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 2 cut(s) 391, 410
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 365
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 424
XspI CTAG 2 cut(s) 65, 514
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.