Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1144 |
| Acc16I | TGCGCA | 1 cut(s) | 1152 |
| Acc36I | ACCTGC | 2 cut(s) | 272, 1144 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 571, 1010 |
| AccI | GTMKAC | 1 cut(s) | 109 |
| AciI | CCGC | 2 cut(s) | 700, 1101 |
| AclWI | GGATC | 2 cut(s) | 156, 169 |
| AcsI | RAATTY | 3 cut(s) | 98, 1087, 1573 |
| AfaI | GTAC | 6 cut(s) | 119, 190, 249, 314, 918, 1456 |
| AfeI | AGCGCT | 1 cut(s) | 646 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 571, 1010, 1392, 1410 |
| AgsI | TTSAA | 4 cut(s) | 482, 493, 1249, 1399 |
| AjnI | CCWGG | 2 cut(s) | 353, 538 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 813, 845 |
| AleI | CACNNNNGTG | 1 cut(s) | 816 |
| AluBI | AGCT | 5 cut(s) | 498, 876, 883, 1007, 1140 |
| AluI | AGCT | 5 cut(s) | 498, 876, 883, 1007, 1140 |
| Alw21I | GWGCWC | 2 cut(s) | 178, 711 |
| Alw44I | GTGCAC | 2 cut(s) | 174, 707 |
| AlwI | GGATC | 2 cut(s) | 156, 169 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1010 |
| Aor51HI | AGCGCT | 1 cut(s) | 646 |
| AoxI | GGCC | 2 cut(s) | 20, 1424 |
| ApaLI | GTGCAC | 2 cut(s) | 174, 707 |
| ApeKI | GCWGC | 2 cut(s) | 767, 883 |
| ApoI | RAATTY | 3 cut(s) | 98, 1087, 1573 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 317, 349 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1353 |
| AspLEI | GCGC | 4 cut(s) | 647, 856, 944, 1153 |
| AspS9I | GGNCC | 2 cut(s) | 1172, 1425 |
| AsuC2I | CCSGG | 2 cut(s) | 123, 1406 |
| AsuHPI | GGTGA | 7 cut(s) | 53, 126, 312, 343, 467, 714, 803 |
| AsuII | TTCGAA | 2 cut(s) | 1091, 1347 |
| AvaII | GGWCC | 1 cut(s) | 1172 |
| BaeGI | GKGCMC | 2 cut(s) | 178, 711 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 101, 134 |
| BamHI | GGATCC | 1 cut(s) | 161 |
| Bbv12I | GWGCWC | 2 cut(s) | 178, 711 |
| BbvI | GCAGC | 2 cut(s) | 779, 870 |
| BccI | CCATC | 4 cut(s) | 831, 835, 1008, 1069 |
| BceAI | ACGGC | 1 cut(s) | 295 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciT130I | CCWGG | 2 cut(s) | 355, 540 |
| BciVI | GTATCC | 1 cut(s) | 955 |
| BclI | TGATCA | 1 cut(s) | 1327 |
| BcnI | CCSGG | 2 cut(s) | 123, 1406 |
| BfaI | CTAG | 1 cut(s) | 650 |
| BfmI | CTRYAG | 1 cut(s) | 199 |
| BfoI | RGCGCY | 2 cut(s) | 648, 945 |
| BfuAI | ACCTGC | 2 cut(s) | 272, 1144 |
| BfuI | GTATCC | 1 cut(s) | 955 |
| BisI | GCNGC | 3 cut(s) | 768, 884, 1102 |
| BlsI | GCNGC | 3 cut(s) | 769, 885, 1103 |
| Bme1390I | CCNGG | 4 cut(s) | 123, 355, 540, 1406 |
| Bme18I | GGWCC | 1 cut(s) | 1172 |
| BmgT120I | GGNCC | 2 cut(s) | 1172, 1425 |
| BmiI | GGNNCC | 3 cut(s) | 163, 209, 268 |
| BmrFI | CCNGG | 4 cut(s) | 123, 355, 540, 1406 |
| BmrI | ACTGGG | 1 cut(s) | 160 |
| BmsI | GCATC | 1 cut(s) | 1024 |
| BmuI | ACTGGG | 1 cut(s) | 160 |
| BpmI | CTGGAG | 3 cut(s) | 522, 987, 1083 |
| Bpu14I | TTCGAA | 2 cut(s) | 1091, 1347 |
| BpuEI | CTTGAG | 2 cut(s) | 1325, 1552 |
| BpuMI | CCSGG | 2 cut(s) | 123, 1406 |
| BsaAI | YACGTR | 2 cut(s) | 731, 920 |
| BsaBI | GATNNNNATC | 1 cut(s) | 347 |
| BsaJI | CCNNGG | 2 cut(s) | 121, 1404 |
| BsaWI | WCCGGW | 1 cut(s) | 102 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 571, 1010, 1392, 1410 |
| Bse1I | ACTGG | 3 cut(s) | 166, 219, 1066 |
| Bse8I | GATNNNNATC | 1 cut(s) | 347 |
| BseBI | CCWGG | 2 cut(s) | 355, 540 |
| BseDI | CCNNGG | 2 cut(s) | 121, 1404 |
| BseGI | GGATG | 5 cut(s) | 842, 846, 1019, 1051, 1080 |
| BseJI | GATNNNNATC | 1 cut(s) | 347 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 571, 1010, 1392, 1410 |
| BseMII | CTCAG | 1 cut(s) | 405 |
| BseNI | ACTGG | 3 cut(s) | 166, 219, 1066 |
| BseRI | GAGGAG | 2 cut(s) | 44, 1375 |
| BseSI | GKGCMC | 2 cut(s) | 178, 711 |
| BseXI | GCAGC | 2 cut(s) | 779, 870 |
| BsgI | GTGCAG | 2 cut(s) | 300, 602 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1392 |
| BshFI | GGCC | 2 cut(s) | 22, 1426 |
| BsiEI | CGRYCG | 1 cut(s) | 1392 |
| BsiHKAI | GWGCWC | 2 cut(s) | 178, 711 |
| BsiSI | CCGG | 3 cut(s) | 103, 123, 1406 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 571, 1010, 1392, 1410 |
| BsnI | GGCC | 2 cut(s) | 22, 1426 |
| Bsp119I | TTCGAA | 2 cut(s) | 1091, 1347 |
| Bsp1286I | GDGCHC | 2 cut(s) | 178, 711 |
| Bsp1407I | TGTACA | 1 cut(s) | 1454 |
| Bsp143I | GATC | 3 cut(s) | 161, 1327, 1389 |
| BspACI | CCGC | 2 cut(s) | 700, 1101 |
| BspANI | GGCC | 2 cut(s) | 22, 1426 |
| BspCNI | CTCAG | 1 cut(s) | 406 |
| BspLI | GGNNCC | 3 cut(s) | 163, 209, 268 |
| BspMI | ACCTGC | 2 cut(s) | 272, 1144 |
| BspPI | GGATC | 2 cut(s) | 156, 169 |
| BspT104I | TTCGAA | 2 cut(s) | 1091, 1347 |
| BsrGI | TGTACA | 1 cut(s) | 1454 |
| BsrI | ACTGG | 3 cut(s) | 166, 219, 1066 |
| BssECI | CCNNGG | 2 cut(s) | 121, 1404 |
| BssMI | GATC | 3 cut(s) | 161, 1327, 1389 |
| Bst2UI | CCWGG | 2 cut(s) | 355, 540 |
| Bst4CI | ACNGT | 4 cut(s) | 180, 455, 706, 1324 |
| Bst6I | CTCTTC | 2 cut(s) | 816, 1270 |
| BstAUI | TGTACA | 1 cut(s) | 1454 |
| BstBAI | YACGTR | 2 cut(s) | 731, 920 |
| BstBI | TTCGAA | 2 cut(s) | 1091, 1347 |
| BstC8I | GCNNGC | 1 cut(s) | 744 |
| BstDEI | CTNAG | 5 cut(s) | 374, 414, 622, 867, 1494 |
| BstEII | GGTNACC | 1 cut(s) | 318 |
| BstF5I | GGATG | 5 cut(s) | 842, 846, 1019, 1051, 1080 |
| BstH2I | RGCGCY | 2 cut(s) | 648, 945 |
| BstHHI | GCGC | 4 cut(s) | 647, 856, 944, 1153 |
| BstKTI | GATC | 3 cut(s) | 164, 1330, 1392 |
| BstMBI | GATC | 3 cut(s) | 161, 1327, 1389 |
| BstMCI | CGRYCG | 1 cut(s) | 1392 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 149, 633, 642, 1110, 1131, 1237 |
| BstNI | CCWGG | 2 cut(s) | 355, 540 |
| BstNSI | RCATGY | 1 cut(s) | 746 |
| BstPI | GGTNACC | 1 cut(s) | 318 |
| BstSCI | CCNGG | 4 cut(s) | 121, 353, 538, 1404 |
| BstSFI | CTRYAG | 1 cut(s) | 199 |
| BstSLI | GKGCMC | 2 cut(s) | 178, 711 |
| BstSNI | TACGTA | 1 cut(s) | 920 |
| BstV1I | GCAGC | 2 cut(s) | 779, 870 |
| BstX2I | RGATCY | 1 cut(s) | 161 |
| BstYI | RGATCY | 1 cut(s) | 161 |
| BsuI | GTATCC | 1 cut(s) | 955 |
| BsuRI | GGCC | 2 cut(s) | 22, 1426 |
| BtsCI | GGATG | 5 cut(s) | 842, 846, 1019, 1051, 1080 |
| BtsIMutI | CAGTG | 2 cut(s) | 92, 702 |
| BveI | ACCTGC | 2 cut(s) | 272, 1144 |
| Cac8I | GCNNGC | 1 cut(s) | 744 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1010 |
| CfoI | GCGC | 4 cut(s) | 647, 856, 944, 1153 |
| Cfr13I | GGNCC | 2 cut(s) | 1172, 1425 |
| Csp6I | GTAC | 6 cut(s) | 118, 189, 248, 313, 917, 1455 |
| CviAII | CATG | 7 cut(s) | 387, 419, 712, 743, 1041, 1129, 1551 |
| CviQI | GTAC | 6 cut(s) | 118, 189, 248, 313, 917, 1455 |
| DdeI | CTNAG | 5 cut(s) | 374, 414, 622, 867, 1494 |
| DpnI | GATC | 3 cut(s) | 163, 1329, 1391 |
| DpnII | GATC | 3 cut(s) | 161, 1327, 1389 |
| Eam1104I | CTCTTC | 2 cut(s) | 816, 1270 |
| EarI | CTCTTC | 2 cut(s) | 816, 1270 |
| Eco105I | TACGTA | 1 cut(s) | 920 |
| Eco47I | GGWCC | 1 cut(s) | 1172 |
| Eco47III | AGCGCT | 1 cut(s) | 646 |
| Eco91I | GGTNACC | 1 cut(s) | 318 |
| EcoO65I | GGTNACC | 1 cut(s) | 318 |
| EcoRII | CCWGG | 2 cut(s) | 353, 538 |
| EcoT22I | ATGCAT | 1 cut(s) | 1193 |
| FaeI | CATG | 7 cut(s) | 390, 422, 715, 746, 1044, 1132, 1554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 860, 892 |
| FatI | CATG | 7 cut(s) | 386, 418, 711, 742, 1040, 1128, 1550 |
| FauNDI | CATATG | 1 cut(s) | 1212 |
| FbaI | TGATCA | 1 cut(s) | 1327 |
| FblI | GTMKAC | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 3 cut(s) | 768, 884, 1102 |
| FokI | GGATG | 5 cut(s) | 849, 853, 1026, 1058, 1087 |
| Fsp4HI | GCNGC | 3 cut(s) | 768, 884, 1102 |
| FspBI | CTAG | 1 cut(s) | 650 |
| FspI | TGCGCA | 1 cut(s) | 1152 |
| GlaI | GCGC | 4 cut(s) | 646, 855, 943, 1152 |
| GluI | GCNGC | 3 cut(s) | 768, 884, 1102 |
| GsuI | CTGGAG | 3 cut(s) | 522, 987, 1083 |
| HaeII | RGCGCY | 2 cut(s) | 648, 945 |
| HaeIII | GGCC | 2 cut(s) | 22, 1426 |
| HapII | CCGG | 3 cut(s) | 103, 123, 1406 |
| HhaI | GCGC | 4 cut(s) | 647, 856, 944, 1153 |
| Hin1II | CATG | 7 cut(s) | 390, 422, 715, 746, 1044, 1132, 1554 |
| Hin6I | GCGC | 4 cut(s) | 645, 854, 942, 1151 |
| HinP1I | GCGC | 4 cut(s) | 645, 854, 942, 1151 |
| HincII | GTYRAC | 2 cut(s) | 81, 1059 |
| HindII | GTYRAC | 2 cut(s) | 81, 1059 |
| HindIII | AAGCTT | 1 cut(s) | 496 |
| HinfI | GANTC | 1 cut(s) | 1233 |
| HpaI | GTTAAC | 1 cut(s) | 81 |
| HpaII | CCGG | 3 cut(s) | 103, 123, 1406 |
| HphI | GGTGA | 7 cut(s) | 53, 126, 312, 343, 467, 714, 803 |
| Hpy166II | GTNNAC | 7 cut(s) | 81, 110, 134, 176, 709, 1059, 1435 |
| Hpy188I | TCNGA | 5 cut(s) | 212, 271, 415, 552, 1372 |
| Hpy188III | TCNNGA | 3 cut(s) | 1011, 1358, 1531 |
| Hpy8I | GTNNAC | 7 cut(s) | 81, 110, 134, 176, 709, 1059, 1435 |
| HpyAV | CCTTC | 3 cut(s) | 1045, 1087, 1176 |
| HpyCH4III | ACNGT | 4 cut(s) | 180, 455, 706, 1324 |
| HpyCH4IV | ACGT | 3 cut(s) | 719, 730, 919 |
| HpyCH4V | TGCA | 7 cut(s) | 176, 281, 619, 709, 1037, 1191, 1240 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 149, 633, 642, 1110, 1131, 1237 |
| HpyF3I | CTNAG | 5 cut(s) | 374, 414, 622, 867, 1494 |
| HpySE526I | ACGT | 3 cut(s) | 719, 730, 919 |
| Hsp92II | CATG | 7 cut(s) | 390, 422, 715, 746, 1044, 1132, 1554 |
| HspAI | GCGC | 4 cut(s) | 645, 854, 942, 1151 |
| Ksp22I | TGATCA | 1 cut(s) | 1327 |
| KspAI | GTTAAC | 1 cut(s) | 81 |
| Kzo9I | GATC | 3 cut(s) | 161, 1327, 1389 |
| Lsp1109I | GCAGC | 2 cut(s) | 779, 870 |
| LweI | GCATC | 1 cut(s) | 1024 |
| MaeI | CTAG | 1 cut(s) | 650 |
| MaeII | ACGT | 3 cut(s) | 719, 730, 919 |
| MaeIII | GTNAC | 5 cut(s) | 318, 462, 715, 720, 1160 |
| MalI | GATC | 3 cut(s) | 163, 1329, 1391 |
| MboI | GATC | 3 cut(s) | 161, 1327, 1389 |
| MboII | GAAGA | 2 cut(s) | 833, 1287 |
| MflI | RGATCY | 1 cut(s) | 161 |
| MhlI | GDGCHC | 2 cut(s) | 178, 711 |
| MlyI | GAGTC | 1 cut(s) | 1227 |
| MmeI | TCCRAC | 4 cut(s) | 235, 294, 739, 939 |
| Mph1103I | ATGCAT | 1 cut(s) | 1193 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1353 |
| MseI | TTAA | 4 cut(s) | 68, 80, 1319, 1585 |
| MslI | CAYNNNNRTG | 3 cut(s) | 396, 423, 816 |
| MspI | CCGG | 3 cut(s) | 103, 123, 1406 |
| MspR9I | CCNGG | 4 cut(s) | 123, 355, 540, 1406 |
| MvaI | CCWGG | 2 cut(s) | 355, 540 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 149, 633, 642, 1110, 1131, 1237 |
| NciI | CCSGG | 2 cut(s) | 123, 1406 |
| NdeI | CATATG | 1 cut(s) | 1212 |
| NdeII | GATC | 3 cut(s) | 161, 1327, 1389 |
| NlaIII | CATG | 7 cut(s) | 390, 422, 715, 746, 1044, 1132, 1554 |
| NlaIV | GGNNCC | 3 cut(s) | 163, 209, 268 |
| NmuCI | GTSAC | 3 cut(s) | 318, 720, 1160 |
| NsbI | TGCGCA | 1 cut(s) | 1152 |
| NsiI | ATGCAT | 1 cut(s) | 1193 |
| NspI | RCATGY | 1 cut(s) | 746 |
| NspV | TTCGAA | 2 cut(s) | 1091, 1347 |
| OliI | CACNNNNGTG | 1 cut(s) | 816 |
| PaeI | GCATGC | 1 cut(s) | 746 |
| PaqCI | CACCTGC | 1 cut(s) | 1144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1353 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 571, 1010 |
| PkrI | GCNGC | 3 cut(s) | 769, 885, 1103 |
| Ple19I | CGATCG | 1 cut(s) | 1392 |
| PleI | GAGTC | 1 cut(s) | 1227 |
| PpsI | GAGTC | 1 cut(s) | 1227 |
| Ppu21I | YACGTR | 2 cut(s) | 731, 920 |
| Psp6I | CCWGG | 2 cut(s) | 353, 538 |
| PspEI | GGTNACC | 1 cut(s) | 318 |
| PspGI | CCWGG | 2 cut(s) | 353, 538 |
| PspN4I | GGNNCC | 3 cut(s) | 163, 209, 268 |
| PspPI | GGNCC | 2 cut(s) | 1172, 1425 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1010 |
| PsuI | RGATCY | 1 cut(s) | 161 |
| PvuI | CGATCG | 1 cut(s) | 1392 |
| RsaI | GTAC | 6 cut(s) | 119, 190, 249, 314, 918, 1456 |
| RsaNI | GTAC | 6 cut(s) | 118, 189, 248, 313, 917, 1455 |
| RseI | CAYNNNNRTG | 3 cut(s) | 396, 423, 816 |
| SaqAI | TTAA | 4 cut(s) | 68, 80, 1319, 1585 |
| SatI | GCNGC | 3 cut(s) | 768, 884, 1102 |
| Sau3AI | GATC | 3 cut(s) | 161, 1327, 1389 |
| Sau96I | GGNCC | 2 cut(s) | 1172, 1425 |
| SchI | GAGTC | 1 cut(s) | 1227 |
| ScrFI | CCNGG | 4 cut(s) | 123, 355, 540, 1406 |
| SduI | GDGCHC | 2 cut(s) | 178, 711 |
| SfaNI | GCATC | 1 cut(s) | 1024 |
| SfcI | CTRYAG | 1 cut(s) | 199 |
| SfuI | TTCGAA | 2 cut(s) | 1091, 1347 |
| SinI | GGWCC | 1 cut(s) | 1172 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 396, 423, 816 |
| SmlI | CTYRAG | 2 cut(s) | 1304, 1531 |
| SmoI | CTYRAG | 2 cut(s) | 1304, 1531 |
| SnaBI | TACGTA | 1 cut(s) | 920 |
| SphI | GCATGC | 1 cut(s) | 746 |
| SsiI | CCGC | 2 cut(s) | 700, 1101 |
| SspMI | CTAG | 1 cut(s) | 650 |
| StyD4I | CCNGG | 4 cut(s) | 121, 353, 538, 1404 |
| TaaI | ACNGT | 4 cut(s) | 180, 455, 706, 1324 |
| TaiI | ACGT | 3 cut(s) | 722, 733, 922 |
| TaqI | TCGA | 6 cut(s) | 383, 1091, 1218, 1273, 1347, 1388 |
| TatI | WGTACW | 1 cut(s) | 1454 |
| TauI | GCSGC | 1 cut(s) | 1104 |
| Tru1I | TTAA | 4 cut(s) | 68, 80, 1319, 1585 |
| Tru9I | TTAA | 4 cut(s) | 68, 80, 1319, 1585 |
| TscAI | CASTG | 2 cut(s) | 99, 709 |
| TseFI | GTSAC | 3 cut(s) | 318, 720, 1160 |
| TseI | GCWGC | 2 cut(s) | 767, 883 |
| Tsp45I | GTSAC | 3 cut(s) | 318, 720, 1160 |
| TspDTI | ATGAA | 1 cut(s) | 1539 |
| TspGWI | ACGGA | 2 cut(s) | 945, 1179 |
| TspRI | CASTG | 2 cut(s) | 99, 709 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 571, 1010 |
| VneI | GTGCAC | 2 cut(s) | 174, 707 |
| VpaK11BI | GGWCC | 1 cut(s) | 1172 |
| XapI | RAATTY | 3 cut(s) | 98, 1087, 1573 |
| XceI | RCATGY | 1 cut(s) | 746 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1011 |
| XmiI | GTMKAC | 1 cut(s) | 109 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1353 |
| XspI | CTAG | 1 cut(s) | 650 |
| Zsp2I | ATGCAT | 1 cut(s) | 1193 |