Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000370

Physical Location & Seq

Genomic Coordinates Forward (+)

30408880 .. 30410673

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGGGCAACAGGACCTAAATGGCAACGGGGGTGTGATAACTGTTATTCAAGATATGGCAAACGCCATTAGAGGAAATAATAACCATCAAGAAGATGTTGGAAGCCGAGTTAAGAGAATTCAAAAGGAATTCCGGAAATCTCGACCACCACGTGATTTAACTGTAGCTGAATATCACGCTAAGTTTGAAGAACTCATGCAGTTCGCACCTAACATGATCCCAACTGAGCTTGCCAAAGCAAAACGATTTCAAAGTGGTCTTAACCCTACAATTAAGGAGAAGATGTCAATTCTCAAGCTGGAAAGGTATGCAGATGTGGTAGATCGAGCACTAATCGCTAAACATAATCTCAATGAACCTAAGAGAATTTGGGAGAATCGACAACCAGGCGGAGGACAAAGGAATAACAAGCACCAAAATTTTGGCATATCAAGCACCAACAGTACCACAACCGCAATTTCGACCTATGCAATATCGTGCTCCTTATCAACCTCCACAGAACTGGCAGAGACCATTGAGCAACAACGACAAGGTGGACCTCTTGCATCGAATAGACCTAAGGCACCTGTTGGATGGACGAGGTTAGGACAACTCAATCAGGGTCGAGTTTATGTTGTGGGCCAAGTGGTGGATGAGACTAATAATGCGGTGGTTGAAGGGATCTCTGATCATAGAATTACATGTGATTTGATGATGATGGAAATGGTAGAGTATGATGTTATTTTAGGGATGGATTGGCTCGCAAAATATCAAGCTATCATCGATTGTGGGAGAAAAAGGGTGACATTAACTACTTATGAAGATCTGTCAAATTTACCACCAGAGCAGGAAGTGGAATTTTCTATCGAAGTCTATCTAGGAACAACACCTATTTCAATACCTCTATACCGCATGGCACCAAAAGAATTGAGGGAATTGAAATCACAAATTGAGGAGCTACTGCGCAAGGGATTCATTCATCCAAGTGTATCACCTTGGGGAGCACCCACTTTGTTTCTAAAGAAGGATGAAACTCTTAGAATGTACATTGACTATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

348

Amino Acids

39.31

Weight (kDa)

7.03

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVP_2	PF08284	220 - 267	2.6e-13	Retroviral aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica	MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica	Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis	pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis	RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata	RLG00000029892
rosa_multiflora	Rmu_sc0001866.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa	Rorug05G0160500 Rorug06G0096500
rosa_samantha	Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana	Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	947
AccB1I	GGYRCC	2 cut(s)	565, 898
AccB7I	CCANNNNNTGG	1 cut(s)	631
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	4 cut(s)	393, 456, 650, 892
AclWI	GGATC	2 cut(s)	214, 671
AcsI	RAATTY	6 cut(s)	120, 131, 369, 421, 814, 839
AcvI	CACGTG	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	448, 1028
AfiI	CCNNNNNNNGG	2 cut(s)	395, 631
AflIII	ACRYGT	1 cut(s)	683
AgsI	TTSAA	7 cut(s)	53, 125, 191, 254, 659, 879, 922
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	5 cut(s)	170, 232, 301, 758, 940
AluI	AGCT	5 cut(s)	170, 232, 301, 758, 940
Alw21I	GWGCWC	3 cut(s)	334, 485, 988
Alw26I	GTCTC	2 cut(s)	506, 632
AlwI	GGATC	2 cut(s)	214, 671
Aor13HI	TCCGGA	1 cut(s)	135
AoxI	GGCC	1 cut(s)	622
ApoI	RAATTY	6 cut(s)	120, 131, 369, 421, 814, 839
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	3 cut(s)	16, 539, 622
AsuHPI	GGTGA	2 cut(s)	796, 966
AvaII	GGWCC	2 cut(s)	16, 539
AxyI	CCTNAGG	1 cut(s)	561
BanI	GGYRCC	2 cut(s)	565, 898
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	3 cut(s)	334, 485, 988
BccI	CCATC	4 cut(s)	96, 570, 694, 727
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	2 cut(s)	506, 632
BfaI	CTAG	1 cut(s)	860
BfmI	CTRYAG	1 cut(s)	165
BglII	AGATCT	1 cut(s)	805
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	2 cut(s)	16, 539
BmgT120I	GGNCC	3 cut(s)	16, 539, 622
BmiI	GGNNCC	2 cut(s)	567, 900
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	765
BsaAI	YACGTR	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	977
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 631
Bse1I	ACTGG	1 cut(s)	510
Bse21I	CCTNAGG	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	390
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	977
BseGI	GGATG	5 cut(s)	581, 640, 738, 961, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	395, 631
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	950
BshFI	GGCC	1 cut(s)	624
BshNI	GGYRCC	2 cut(s)	565, 898
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	3 cut(s)	334, 485, 988
BsiSI	CCGG	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	395, 631
BsmAI	GTCTC	2 cut(s)	506, 632
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	3 cut(s)	334, 485, 988
Bsp13I	TCCGGA	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	5 cut(s)	219, 325, 663, 670, 805
BspACI	CCGC	4 cut(s)	393, 456, 650, 892
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	765
BspEI	TCCGGA	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	567, 900
BspPI	GGATC	2 cut(s)	214, 671
BspT107I	GGYRCC	2 cut(s)	565, 898
BspTNI	GGTCTC	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	977
BssMI	GATC	5 cut(s)	219, 325, 663, 670, 805
BssT1I	CCWWGG	1 cut(s)	977
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	46, 166, 446
BstAUI	TGTACA	1 cut(s)	1026
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	234, 744
BstDEI	CTNAG	5 cut(s)	183, 228, 363, 561, 1019
BstF5I	GGATG	5 cut(s)	581, 640, 738, 961, 1015
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	5 cut(s)	222, 328, 666, 673, 808
BstMAI	GTCTC	2 cut(s)	506, 632
BstMBI	GATC	5 cut(s)	219, 325, 663, 670, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 435
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	663, 805
BstXI	CCANNNNNNTGG	2 cut(s)	425, 505
BstYI	RGATCY	2 cut(s)	663, 805
Bsu15I	ATCGAT	1 cut(s)	765
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	624
BsuTUI	ATCGAT	1 cut(s)	765
BtsCI	GGATG	5 cut(s)	581, 640, 738, 961, 1015
Cac8I	GCNNGC	2 cut(s)	234, 744
CfoI	GCGC	1 cut(s)	948
Cfr13I	GGNCC	3 cut(s)	16, 539, 622
ClaI	ATCGAT	1 cut(s)	765
Csp6I	GTAC	2 cut(s)	447, 1027
CviAII	CATG	4 cut(s)	199, 217, 684, 895
CviJI	RGCY	8 cut(s)	108, 170, 232, 301, 624, 742, 758, 940
CviKI_1	RGCY	8 cut(s)	108, 170, 232, 301, 624, 742, 758, 940
CviQI	GTAC	2 cut(s)	447, 1027
DdeI	CTNAG	5 cut(s)	183, 228, 363, 561, 1019
DpnI	GATC	5 cut(s)	221, 327, 665, 672, 807
DpnII	GATC	5 cut(s)	219, 325, 663, 670, 805
DraIII	CACNNNGTG	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	977
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	16, 539
Eco72I	CACGTG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	2 cut(s)	120, 131
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	977
ErhI	CCWWGG	1 cut(s)	977
FaeI	CATG	4 cut(s)	202, 220, 687, 898
FatI	CATG	4 cut(s)	198, 216, 683, 894
FbaI	TGATCA	1 cut(s)	670
FokI	GGATG	5 cut(s)	588, 647, 745, 948, 1022
FspBI	CTAG	1 cut(s)	860
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	1 cut(s)	947
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	4 cut(s)	202, 220, 687, 898
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HinfI	GANTC	2 cut(s)	379, 954
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	2 cut(s)	796, 966
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	1 cut(s)	670
Hpy188III	TCNNGA	4 cut(s)	53, 92, 136, 144
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	653, 1000
HpyCH4III	ACNGT	3 cut(s)	46, 166, 446
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	202, 314, 473, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 435
HpyF3I	CTNAG	5 cut(s)	183, 228, 363, 561, 1019
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	4 cut(s)	202, 220, 687, 898
HspAI	GCGC	1 cut(s)	946
Kpn2I	TCCGGA	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	5 cut(s)	219, 325, 663, 670, 805
LmnI	GCTCC	3 cut(s)	488, 937, 983
LpnPI	CCDG	9 cut(s)	149, 287, 375, 402, 491, 582, 587, 815, 837
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	1 cut(s)	860
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	5 cut(s)	221, 327, 665, 672, 807
MboI	GATC	5 cut(s)	219, 325, 663, 670, 805
MboII	GAAGA	4 cut(s)	107, 203, 295, 815
MflI	RGATCY	2 cut(s)	663, 805
MhlI	GDGCHC	3 cut(s)	334, 485, 988
MmeI	TCCRAC	2 cut(s)	82, 553
MnlI	CCTC	8 cut(s)	68, 389, 505, 552, 576, 894, 906, 928
MroI	TCCGGA	1 cut(s)	135
MseI	TTAA	5 cut(s)	114, 161, 264, 276, 791
MslI	CAYNNNNRTG	1 cut(s)	966
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	338, 435
NdeII	GATC	5 cut(s)	219, 325, 663, 670, 805
NlaIII	CATG	4 cut(s)	202, 220, 687, 898
NlaIV	GGNNCC	2 cut(s)	567, 900
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	784
NsbI	TGCGCA	1 cut(s)	947
NspI	RCATGY	1 cut(s)	687
PciI	ACATGT	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	379, 954
PflMI	CCANNNNNTGG	1 cut(s)	631
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	16
PscI	ACATGT	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	388
PspCI	CACGTG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	567, 900
PspPI	GGNCC	3 cut(s)	16, 539, 622
PspPPI	RGGWCCY	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	663, 805
RsaI	GTAC	2 cut(s)	448, 1028
RsaNI	GTAC	2 cut(s)	447, 1027
RseI	CAYNNNNRTG	1 cut(s)	966
SaqAI	TTAA	5 cut(s)	114, 161, 264, 276, 791
Sau3AI	GATC	5 cut(s)	219, 325, 663, 670, 805
Sau96I	GGNCC	3 cut(s)	16, 539, 622
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	3 cut(s)	334, 485, 988
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	16, 539
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SsiI	CCGC	4 cut(s)	393, 456, 650, 892
SspMI	CTAG	1 cut(s)	860
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	977
TaaI	ACNGT	3 cut(s)	46, 166, 446
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	8 cut(s)	145, 328, 382, 464, 551, 607, 765, 849
TatI	WGTACW	1 cut(s)	1026
TfiI	GAWTC	2 cut(s)	379, 954
Tru1I	TTAA	5 cut(s)	114, 161, 264, 276, 791
Tru9I	TTAA	5 cut(s)	114, 161, 264, 276, 791
TseFI	GTSAC	1 cut(s)	784
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	5 cut(s)	372, 816, 946, 950, 1026
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	2 cut(s)	16, 539
XapI	RAATTY	6 cut(s)	120, 131, 369, 421, 814, 839
XceI	RCATGY	1 cut(s)	687
XspI	CTAG	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.