Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000370

Physical Location & Seq

Genomic Coordinates Forward (+)

3858222 .. 3858452

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAACTTGTATTCTGGTGGAAACAGGAGTATAATTCGTTGTCACCGGAGGAAACAGCCGATTGAGAATTGTTTAAGGACTTGTTTAAAGAAAAGAATTATTCCTTCGGCATCTTATGATGGTAGAAAGCAAGAGTTTGCAAATGTGAGACAAGGAAAACTGACGATCAATGAGTATTATAGAAAGTTCTCAGACTTGCCTCGTCCCATCCGAATATTGCTGCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1990538 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

77

Amino Acids

9.06

Weight (kDa)

10.53

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica	MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica	Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis	pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis	RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata	RLG00000029892
rosa_multiflora	Rmu_sc0001866.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa	Rorug05G0160500 Rorug06G0096500
rosa_samantha	Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana	Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw26I	GTCTC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	113, 215
BcoDI	GTCTC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmsI	GCATC	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	45
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	203
BssMI	GATC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	207
CviJI	RGCY	1 cut(s)	58
CviKI_1	RGCY	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DraI	TTTAAA	1 cut(s)	87
FaiI	YATR	3 cut(s)	32, 117, 180
FaqI	GGGAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
HapII	CCGG	1 cut(s)	46
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	193, 212
HpyAV	CCTTC	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	165
LpnPI	CCDG	2 cut(s)	10, 59
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MluCI	AATT	3 cut(s)	33, 67, 96
MnlI	CCTC	2 cut(s)	42, 210
MseI	TTAA	2 cut(s)	74, 86
MspI	CCGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	74, 86
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	165
SfaNI	GCATC	1 cut(s)	119
SgeI	CNNG	9 cut(s)	19, 27, 37, 58, 93, 143, 164, 208, 213
Sse9I	AATT	3 cut(s)	33, 67, 96
SspI	AATATT	1 cut(s)	216
TasI	AATT	3 cut(s)	33, 67, 96
Tru1I	TTAA	2 cut(s)	74, 86
Tru9I	TTAA	2 cut(s)	74, 86
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.