pycom02g23140

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000370
Physical Location & Seq
Reverse (-)
21291165 .. 21298383
7219 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23140.3

Sequence Viewer

Length: 834 bp
ATGAATCGGAATCATCTAGCAGTGAAAGGGAAAGTTCATACGAAGAAAGATATGCCTAGAACAAGCGAAGCTACTTTATCCAATCCCAGGGCTCCATATGATGAGGATGTGGCTAAGGTTTTACAGGCCATCAAGCAAATGGCTGACCCTGCGCTTGAGGGCACATCCGGAGTAGATCGGAGGCTGAAATTTTTGAAGGTTTTCATTAGTCTGTCACCCCCGCAGTATGCAGGAAATCCTGATGAACCGTTAGAAGGGGTGGAGTGGCTTGCAAGGATAAAGCAATGTTTTGATGTAAGTGATGTCCCCGATGACCTAAAAGTGGGGTTTGCTACATACTGTCTTACTGGAGCGGCTCACCACTGGTGGGAATTTGTTAAAAGGATACGTGATGTTAAATCCATCACTTGGGGAGAATTTGAGGAGCTGTTTTTGAATATATATTTTCCTCAAACTATAAGCGCTGCTAAACGCGAAGAGTTTCTAGGGTTGAGCCAAGGAAACATGTCCGTTGCTCAGTATGCATCTAAGTTCCTTGAGCTAGCATGGTATGCACGAACTAATCTTGTGAGGTCAGATGAACTTGCAGCATCGGAGTTTCTAAGTGGACTGAGGCCTTCCATAAGACCAAGGGTAGCTCTATTCAATACCTATGATGGAATGGTTGCAGCAGCGTTGAGAGTGGAACAATCTTTGGAGGACAGCGAGGAAGAGCCGTTTGAGGAAGCTTCTGGTGTAGGGGAAAAAAGGCCAAGAAACCAATACATTTGCCACCACTGCGGCGAGCCTGGTCATATTCGGCCTAATTGCCCGGAATTAAACTCGCGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

278

Amino Acids

31.26

Weight (kDa)

5.87

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 353
AccII CGCG 2 cut(s) 474, 826
AccIII TCCGGA 1 cut(s) 167
AciI CCGC 3 cut(s) 221, 353, 780
AcsI RAATTY 3 cut(s) 188, 371, 416
AfeI AGCGCT 1 cut(s) 463
AfiI CCNNNNNNNGG 5 cut(s) 87, 254, 322, 367, 408
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 3 cut(s) 196, 436, 646
AjnI CCWGG 2 cut(s) 86, 787
AluBI AGCT 5 cut(s) 71, 427, 541, 638, 728
AluI AGCT 5 cut(s) 71, 427, 541, 638, 728
Aor13HI TCCGGA 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 463
AoxI GGCC 4 cut(s) 126, 614, 749, 800
ApeKI GCWGC 4 cut(s) 464, 587, 668, 671
ApoI RAATTY 3 cut(s) 188, 371, 416
Asp700I GAANNNNTTC 2 cut(s) 200, 480
AspLEI GCGC 2 cut(s) 154, 464
AsuC2I CCSGG 1 cut(s) 812
AsuHPI GGTGA 2 cut(s) 207, 350
AsuNHI GCTAGC 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 94
BbvI GCAGC 4 cut(s) 451, 599, 680, 683
BccI CCATC 3 cut(s) 137, 410, 650
BceAI ACGGC 1 cut(s) 700
BciT130I CCWGG 2 cut(s) 88, 789
BciVI GTATCC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 812
BfaI CTAG 5 cut(s) 17, 57, 485, 542, 832
BfoI RGCGCY 1 cut(s) 465
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 6 cut(s) 354, 465, 588, 669, 672, 781
BlsI GCNGC 6 cut(s) 355, 466, 589, 670, 673, 782
Bme1390I CCNGG 3 cut(s) 88, 789, 812
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 3 cut(s) 88, 789, 812
BmsI GCATC 2 cut(s) 533, 599
BmtI GCTAGC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 176, 557
BpuMI CCSGG 1 cut(s) 812
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 86, 87, 496, 629
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 254, 322, 367, 408
Bse1I ACTGG 2 cut(s) 352, 368
Bse3DI GCAATG 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 167
BseBI CCWGG 2 cut(s) 88, 789
BseDI CCNNGG 4 cut(s) 86, 87, 496, 629
BseGI GGATG 2 cut(s) 112, 164
BseLI CCNNNNNNNGG 5 cut(s) 87, 254, 322, 367, 408
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 530, 602
BseNI ACTGG 2 cut(s) 352, 368
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 4 cut(s) 451, 599, 680, 683
Bsh1236I CGCG 2 cut(s) 474, 826
BshFI GGCC 4 cut(s) 128, 616, 751, 802
BsiSI CCGG 2 cut(s) 168, 812
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 5 cut(s) 87, 254, 322, 367, 408
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 4 cut(s) 128, 616, 751, 802
Bsp1286I GDGCHC 2 cut(s) 94, 164
Bsp13I TCCGGA 1 cut(s) 167
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 3 cut(s) 221, 353, 780
BspANI GGCC 4 cut(s) 128, 616, 751, 802
BspCNI CTCAG 2 cut(s) 529, 603
BspEI TCCGGA 1 cut(s) 167
BspFNI CGCG 2 cut(s) 474, 826
BspLI GGNNCC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 545
BspQI GCTCTTC 1 cut(s) 705
BsrBI CCGCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 290
BsrI ACTGG 2 cut(s) 352, 368
BssECI CCNNGG 4 cut(s) 86, 87, 496, 629
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 2 cut(s) 496, 629
Bst2UI CCWGG 2 cut(s) 88, 789
Bst4CI ACNGT 2 cut(s) 249, 341
Bst6I CTCTTC 2 cut(s) 471, 705
BstAPI GCANNNNNTGC 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 4 cut(s) 270, 543, 785, 828
BstDEI CTNAG 5 cut(s) 114, 516, 528, 602, 611
BstF5I GGATG 2 cut(s) 112, 164
BstFNI CGCG 2 cut(s) 474, 826
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 2 cut(s) 154, 464
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 149, 521, 551, 777
BstNI CCWGG 2 cut(s) 88, 789
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 3 cut(s) 86, 787, 810
BstSLI GKGCMC 1 cut(s) 164
BstUI CGCG 2 cut(s) 474, 826
BstV1I GCAGC 4 cut(s) 451, 599, 680, 683
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 4 cut(s) 128, 616, 751, 802
BtsCI GGATG 2 cut(s) 112, 164
BtsI GCAGTG 2 cut(s) 27, 775
BtsIMutI CAGTG 3 cut(s) 27, 361, 775
Cac8I GCNNGC 4 cut(s) 270, 543, 785, 828
CfoI GCGC 2 cut(s) 154, 464
CviAII CATG 2 cut(s) 505, 546
DdeI CTNAG 5 cut(s) 114, 516, 528, 602, 611
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 471, 705
EarI CTCTTC 2 cut(s) 471, 705
Eco130I CCWWGG 2 cut(s) 496, 629
Eco147I AGGCCT 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 94
Eco47III AGCGCT 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 86, 787
EcoT14I CCWWGG 2 cut(s) 496, 629
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 496, 629
FaeI CATG 2 cut(s) 508, 549
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 504, 545
FauI CCCGC 1 cut(s) 228
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 6 cut(s) 354, 465, 588, 669, 672, 781
FokI GGATG 2 cut(s) 119, 151
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 6 cut(s) 354, 465, 588, 669, 672, 781
FspBI CTAG 5 cut(s) 17, 57, 485, 542, 832
GlaI GCGC 2 cut(s) 153, 463
GluI GCNGC 6 cut(s) 354, 465, 588, 669, 672, 781
GsuI CTGGAG 1 cut(s) 369
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 4 cut(s) 128, 616, 751, 802
HapII CCGG 2 cut(s) 168, 812
HhaI GCGC 2 cut(s) 154, 464
Hin1II CATG 2 cut(s) 508, 549
Hin6I GCGC 2 cut(s) 152, 462
HinP1I GCGC 2 cut(s) 152, 462
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 2 cut(s) 4, 10
HpaII CCGG 2 cut(s) 168, 812
HphI GGTGA 2 cut(s) 207, 350
Hpy166II GTNNAC 1 cut(s) 608
Hpy188I TCNGA 4 cut(s) 9, 180, 577, 595
Hpy188III TCNNGA 2 cut(s) 168, 239
Hpy8I GTNNAC 1 cut(s) 608
HpyAV CCTTC 3 cut(s) 190, 248, 627
HpyCH4III ACNGT 2 cut(s) 249, 341
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 6 cut(s) 230, 272, 524, 554, 587, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 521, 551, 777
HpyF3I CTNAG 5 cut(s) 114, 516, 528, 602, 611
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 2 cut(s) 508, 549
HspAI GCGC 2 cut(s) 152, 462
Kpn2I TCCGGA 1 cut(s) 167
Kzo9I GATC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 3 cut(s) 97, 350, 424
Lsp1109I GCAGC 4 cut(s) 451, 599, 680, 683
LweI GCATC 2 cut(s) 533, 599
MaeI CTAG 5 cut(s) 17, 57, 485, 542, 832
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 1 cut(s) 213
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 353
MboI GATC 1 cut(s) 175
MboII GAAGA 3 cut(s) 55, 488, 722
MhlI GDGCHC 2 cut(s) 94, 164
MluCI AATT 5 cut(s) 188, 371, 416, 805, 815
Mph1103I ATGCAT 1 cut(s) 526
MroI TCCGGA 1 cut(s) 167
MroXI GAANNNNTTC 2 cut(s) 200, 480
MseI TTAA 3 cut(s) 378, 396, 818
MspI CCGG 2 cut(s) 168, 812
MspR9I CCNGG 3 cut(s) 88, 789, 812
MvaI CCWGG 2 cut(s) 88, 789
MvnI CGCG 2 cut(s) 474, 826
MwoI GCNNNNNNNGC 4 cut(s) 149, 521, 551, 777
NciI CCSGG 1 cut(s) 812
NdeI CATATG 1 cut(s) 97
NdeII GATC 1 cut(s) 175
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 2 cut(s) 508, 549
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 1 cut(s) 508
PasI CCCWGGG 1 cut(s) 87
PceI AGGCCT 1 cut(s) 616
PciI ACATGT 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 705
PdmI GAANNNNTTC 2 cut(s) 200, 480
PfeI GAWTC 2 cut(s) 4, 10
PflMI CCANNNNNTGG 1 cut(s) 408
PkrI GCNGC 6 cut(s) 355, 466, 589, 670, 673, 782
Ppu21I YACGTR 1 cut(s) 389
PscI ACATGT 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 86, 787
PspGI CCWGG 2 cut(s) 86, 787
PspN4I GGNNCC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 3 cut(s) 378, 396, 818
SatI GCNGC 6 cut(s) 354, 465, 588, 669, 672, 781
Sau3AI GATC 1 cut(s) 175
ScrFI CCNGG 3 cut(s) 88, 789, 812
SduI GDGCHC 2 cut(s) 94, 164
SfaNI GCATC 2 cut(s) 533, 599
SmlI CTYRAG 2 cut(s) 155, 536
SmoI CTYRAG 2 cut(s) 155, 536
Sse9I AATT 5 cut(s) 188, 371, 416, 805, 815
SseBI AGGCCT 1 cut(s) 616
SsiI CCGC 3 cut(s) 221, 353, 780
SspMI CTAG 5 cut(s) 17, 57, 485, 542, 832
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 3 cut(s) 86, 787, 810
StyI CCWWGG 2 cut(s) 496, 629
TaaI ACNGT 2 cut(s) 249, 341
TaiI ACGT 1 cut(s) 391
TasI AATT 5 cut(s) 188, 371, 416, 805, 815
TauI GCSGC 2 cut(s) 356, 783
TfiI GAWTC 2 cut(s) 4, 10
Tru1I TTAA 3 cut(s) 378, 396, 818
Tru9I TTAA 3 cut(s) 378, 396, 818
TscAI CASTG 3 cut(s) 27, 368, 782
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 4 cut(s) 464, 587, 668, 671
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 5 cut(s) 17, 26, 193, 258, 594
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 3 cut(s) 27, 368, 782
Van91I CCANNNNNTGG 1 cut(s) 408
XapI RAATTY 3 cut(s) 188, 371, 416
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmnI GAANNNNTTC 2 cut(s) 200, 480
XspI CTAG 5 cut(s) 17, 57, 485, 542, 832
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.