DNA RNA polymerases superfamily protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 24 - 179 | 6.4e-07 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 57 - 154 | 1e-20 | Retrotransposon gag protein |
| RVP_2 | PF08284 | 299 - 412 | 5.2e-32 | Retroviral aspartyl protease |
| gag-asp_proteas | PF13975 | 314 - 396 | 5.8e-06 | gag-polyprotein putative aspartyl protease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1136 |
| AccI | GTMKAC | 1 cut(s) | 516 |
| AciI | CCGC | 1 cut(s) | 556 |
| AclWI | GGATC | 1 cut(s) | 793 |
| AcsI | RAATTY | 6 cut(s) | 71, 278, 460, 1032, 1118, 1282 |
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AfaI | GTAC | 5 cut(s) | 148, 503, 554, 916, 934 |
| AflIII | ACRYGT | 2 cut(s) | 223, 1102 |
| AgsI | TTSAA | 4 cut(s) | 134, 271, 338, 796 |
| AhlI | ACTAGT | 1 cut(s) | 37 |
| AjiI | CACGTC | 1 cut(s) | 773 |
| AjnI | CCWGG | 2 cut(s) | 781, 1240 |
| AluBI | AGCT | 4 cut(s) | 160, 512, 877, 890 |
| AluI | AGCT | 4 cut(s) | 160, 512, 877, 890 |
| Alw26I | GTCTC | 4 cut(s) | 306, 368, 648, 1048 |
| AlwI | GGATC | 1 cut(s) | 793 |
| ApeKI | GCWGC | 2 cut(s) | 640, 986 |
| ApoI | RAATTY | 6 cut(s) | 71, 278, 460, 1032, 1118, 1282 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 581 |
| AspS9I | GGNCC | 1 cut(s) | 1129 |
| AsuHPI | GGTGA | 1 cut(s) | 1219 |
| AsuII | TTCGAA | 2 cut(s) | 472, 1255 |
| AvaII | GGWCC | 1 cut(s) | 1129 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 157, 189 |
| BauI | CACGAG | 1 cut(s) | 92 |
| BbsI | GAAGAC | 1 cut(s) | 259 |
| BbvI | GCAGC | 2 cut(s) | 652, 973 |
| BccI | CCATC | 3 cut(s) | 133, 901, 1232 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 954, 988 |
| BciT130I | CCWGG | 2 cut(s) | 783, 1242 |
| BcoDI | GTCTC | 4 cut(s) | 306, 368, 648, 1048 |
| BcuI | ACTAGT | 1 cut(s) | 37 |
| BfaI | CTAG | 5 cut(s) | 29, 38, 59, 1109, 1169 |
| BfmI | CTRYAG | 1 cut(s) | 513 |
| BisI | GCNGC | 2 cut(s) | 641, 987 |
| BlsI | GCNGC | 2 cut(s) | 642, 988 |
| BmcAI | AGTACT | 1 cut(s) | 934 |
| Bme1390I | CCNGG | 2 cut(s) | 783, 1242 |
| Bme18I | GGWCC | 1 cut(s) | 1129 |
| BmgBI | CACGTC | 1 cut(s) | 773 |
| BmgT120I | GGNCC | 1 cut(s) | 1129 |
| BmrFI | CCNGG | 2 cut(s) | 783, 1242 |
| BmsI | GCATC | 2 cut(s) | 184, 974 |
| BoxI | GACNNNNGTC | 1 cut(s) | 748 |
| BpiI | GAAGAC | 1 cut(s) | 259 |
| BpmI | CTGGAG | 1 cut(s) | 99 |
| Bpu14I | TTCGAA | 2 cut(s) | 472, 1255 |
| BpuEI | CTTGAG | 2 cut(s) | 516, 1168 |
| BsaAI | YACGTR | 1 cut(s) | 501 |
| BsaI | GGTCTC | 1 cut(s) | 368 |
| BsaJI | CCNNGG | 5 cut(s) | 346, 586, 632, 839, 1125 |
| Bse1I | ACTGG | 3 cut(s) | 82, 826, 964 |
| Bse3DI | GCAATG | 1 cut(s) | 838 |
| BseBI | CCWGG | 2 cut(s) | 783, 1242 |
| BseDI | CCNNGG | 5 cut(s) | 346, 586, 632, 839, 1125 |
| BseGI | GGATG | 2 cut(s) | 601, 965 |
| BseMI | GCAATG | 1 cut(s) | 838 |
| BseMII | CTCAG | 1 cut(s) | 1011 |
| BseNI | ACTGG | 3 cut(s) | 82, 826, 964 |
| BseXI | GCAGC | 2 cut(s) | 652, 973 |
| BsiWI | CGTACG | 1 cut(s) | 501 |
| BslFI | GGGAC | 3 cut(s) | 224, 756, 825 |
| BsmAI | GTCTC | 4 cut(s) | 306, 368, 648, 1048 |
| BsmFI | GGGAC | 3 cut(s) | 224, 756, 825 |
| BsmI | GAATGC | 1 cut(s) | 777 |
| Bso31I | GGTCTC | 1 cut(s) | 368 |
| Bsp119I | TTCGAA | 2 cut(s) | 472, 1255 |
| Bsp143I | GATC | 1 cut(s) | 785 |
| Bsp19I | CCATGG | 2 cut(s) | 632, 1125 |
| BspACI | CCGC | 1 cut(s) | 556 |
| BspCNI | CTCAG | 1 cut(s) | 1012 |
| BspPI | GGATC | 1 cut(s) | 793 |
| BspT104I | TTCGAA | 2 cut(s) | 472, 1255 |
| BspTNI | GGTCTC | 1 cut(s) | 368 |
| BsrDI | GCAATG | 1 cut(s) | 838 |
| BsrI | ACTGG | 3 cut(s) | 82, 826, 964 |
| BssECI | CCNNGG | 5 cut(s) | 346, 586, 632, 839, 1125 |
| BssMI | GATC | 1 cut(s) | 785 |
| BssSI | CACGAG | 1 cut(s) | 92 |
| BssT1I | CCWWGG | 3 cut(s) | 346, 632, 1125 |
| Bst2BI | CACGAG | 1 cut(s) | 92 |
| Bst2UI | CCWGG | 2 cut(s) | 783, 1242 |
| Bst4CI | ACNGT | 5 cut(s) | 146, 217, 361, 731, 1042 |
| Bst6I | CTCTTC | 2 cut(s) | 160, 534 |
| BstBAI | YACGTR | 1 cut(s) | 501 |
| BstBI | TTCGAA | 2 cut(s) | 472, 1255 |
| BstDEI | CTNAG | 1 cut(s) | 1020 |
| BstDSI | CCRYGG | 2 cut(s) | 632, 1125 |
| BstF5I | GGATG | 2 cut(s) | 601, 965 |
| BstKTI | GATC | 1 cut(s) | 788 |
| BstMAI | GTCTC | 4 cut(s) | 306, 368, 648, 1048 |
| BstMBI | GATC | 1 cut(s) | 785 |
| BstNI | CCWGG | 2 cut(s) | 783, 1242 |
| BstNSI | RCATGY | 1 cut(s) | 1106 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 748 |
| BstSCI | CCNGG | 2 cut(s) | 781, 1240 |
| BstSFI | CTRYAG | 1 cut(s) | 513 |
| BstV1I | GCAGC | 2 cut(s) | 652, 973 |
| BstV2I | GAAGAC | 1 cut(s) | 259 |
| BstX2I | RGATCY | 1 cut(s) | 785 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 20 |
| BstYI | RGATCY | 1 cut(s) | 785 |
| BtgI | CCRYGG | 2 cut(s) | 632, 1125 |
| BtrI | CACGTC | 1 cut(s) | 773 |
| BtsCI | GGATG | 2 cut(s) | 601, 965 |
| BtsIMutI | CAGTG | 3 cut(s) | 833, 957, 1270 |
| Cfr13I | GGNCC | 1 cut(s) | 1129 |
| Csp6I | GTAC | 5 cut(s) | 147, 502, 553, 915, 933 |
| CviQI | GTAC | 5 cut(s) | 147, 502, 553, 915, 933 |
| DdeI | CTNAG | 1 cut(s) | 1020 |
| DpnI | GATC | 1 cut(s) | 787 |
| DpnII | GATC | 1 cut(s) | 785 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1136 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1136 |
| Eam1104I | CTCTTC | 2 cut(s) | 160, 534 |
| EarI | CTCTTC | 2 cut(s) | 160, 534 |
| Eco130I | CCWWGG | 3 cut(s) | 346, 632, 1125 |
| Eco31I | GGTCTC | 1 cut(s) | 368 |
| Eco47I | GGWCC | 1 cut(s) | 1129 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| EcoRI | GAATTC | 1 cut(s) | 460 |
| EcoRII | CCWGG | 2 cut(s) | 781, 1240 |
| EcoT14I | CCWWGG | 3 cut(s) | 346, 632, 1125 |
| ErhI | CCWWGG | 3 cut(s) | 346, 632, 1125 |
| FaqI | GGGAC | 3 cut(s) | 224, 756, 825 |
| FblI | GTMKAC | 1 cut(s) | 516 |
| Fnu4HI | GCNGC | 2 cut(s) | 641, 987 |
| FokI | GGATG | 2 cut(s) | 588, 952 |
| Fsp4HI | GCNGC | 2 cut(s) | 641, 987 |
| FspBI | CTAG | 5 cut(s) | 29, 38, 59, 1109, 1169 |
| GluI | GCNGC | 2 cut(s) | 641, 987 |
| GsuI | CTGGAG | 1 cut(s) | 99 |
| HincII | GTYRAC | 1 cut(s) | 1247 |
| HindII | GTYRAC | 1 cut(s) | 1247 |
| HinfI | GANTC | 6 cut(s) | 55, 444, 495, 544, 656, 971 |
| HphI | GGTGA | 1 cut(s) | 1219 |
| Hpy166II | GTNNAC | 3 cut(s) | 384, 517, 1247 |
| Hpy188I | TCNGA | 4 cut(s) | 587, 618, 666, 970 |
| Hpy188III | TCNNGA | 7 cut(s) | 92, 119, 284, 533, 904, 1109, 1214 |
| Hpy8I | GTNNAC | 3 cut(s) | 384, 517, 1247 |
| Hpy99I | CGWCG | 1 cut(s) | 777 |
| HpyAV | CCTTC | 7 cut(s) | 18, 182, 559, 799, 905, 1240, 1301 |
| HpyCH4III | ACNGT | 5 cut(s) | 146, 217, 361, 731, 1042 |
| HpyCH4IV | ACGT | 4 cut(s) | 223, 490, 500, 772 |
| HpyCH4V | TGCA | 6 cut(s) | 239, 831, 836, 965, 989, 1086 |
| HpyF3I | CTNAG | 1 cut(s) | 1020 |
| HpySE526I | ACGT | 4 cut(s) | 223, 490, 500, 772 |
| Kzo9I | GATC | 1 cut(s) | 785 |
| LmnI | GCTCC | 2 cut(s) | 409, 568 |
| Lsp1109I | GCAGC | 2 cut(s) | 652, 973 |
| LweI | GCATC | 2 cut(s) | 184, 974 |
| MaeI | CTAG | 5 cut(s) | 29, 38, 59, 1109, 1169 |
| MaeII | ACGT | 4 cut(s) | 223, 490, 500, 772 |
| MaeIII | GTNAC | 6 cut(s) | 40, 226, 481, 722, 994, 1267 |
| MalI | GATC | 1 cut(s) | 787 |
| MboI | GATC | 1 cut(s) | 785 |
| MboII | GAAGA | 6 cut(s) | 113, 177, 259, 486, 518, 551 |
| MfeI | CAATTG | 1 cut(s) | 796 |
| MflI | RGATCY | 1 cut(s) | 785 |
| MlyI | GAGTC | 1 cut(s) | 650 |
| MroXI | GAANNNNTTC | 1 cut(s) | 581 |
| MseI | TTAA | 5 cut(s) | 527, 1037, 1073, 1184, 1318 |
| MslI | CAYNNNNRTG | 1 cut(s) | 905 |
| MspR9I | CCNGG | 2 cut(s) | 783, 1242 |
| MunI | CAATTG | 1 cut(s) | 796 |
| Mva1269I | GAATGC | 1 cut(s) | 777 |
| MvaI | CCWGG | 2 cut(s) | 783, 1242 |
| NcoI | CCATGG | 2 cut(s) | 632, 1125 |
| NdeII | GATC | 1 cut(s) | 785 |
| NmuCI | GTSAC | 4 cut(s) | 226, 481, 994, 1267 |
| NspI | RCATGY | 1 cut(s) | 1106 |
| NspV | TTCGAA | 2 cut(s) | 472, 1255 |
| PciI | ACATGT | 1 cut(s) | 1102 |
| PctI | GAATGC | 1 cut(s) | 777 |
| PdmI | GAANNNNTTC | 1 cut(s) | 581 |
| PfeI | GAWTC | 5 cut(s) | 55, 444, 495, 544, 971 |
| Pfl23II | CGTACG | 1 cut(s) | 501 |
| PflFI | GACNNNGTC | 1 cut(s) | 215 |
| PfoI | TCCNGGA | 1 cut(s) | 781 |
| PkrI | GCNGC | 2 cut(s) | 642, 988 |
| PleI | GAGTC | 1 cut(s) | 650 |
| PpsI | GAGTC | 1 cut(s) | 650 |
| Ppu21I | YACGTR | 1 cut(s) | 501 |
| PscI | ACATGT | 1 cut(s) | 1102 |
| PshAI | GACNNNNGTC | 1 cut(s) | 748 |
| Psp6I | CCWGG | 2 cut(s) | 781, 1240 |
| PspGI | CCWGG | 2 cut(s) | 781, 1240 |
| PspLI | CGTACG | 1 cut(s) | 501 |
| PspPI | GGNCC | 1 cut(s) | 1129 |
| PsuI | RGATCY | 1 cut(s) | 785 |
| PsyI | GACNNNGTC | 1 cut(s) | 215 |
| RsaI | GTAC | 5 cut(s) | 148, 503, 554, 916, 934 |
| RsaNI | GTAC | 5 cut(s) | 147, 502, 553, 915, 933 |
| RseI | CAYNNNNRTG | 1 cut(s) | 905 |
| SaqAI | TTAA | 5 cut(s) | 527, 1037, 1073, 1184, 1318 |
| SatI | GCNGC | 2 cut(s) | 641, 987 |
| Sau3AI | GATC | 1 cut(s) | 785 |
| Sau96I | GGNCC | 1 cut(s) | 1129 |
| ScaI | AGTACT | 1 cut(s) | 934 |
| SchI | GAGTC | 1 cut(s) | 650 |
| ScrFI | CCNGG | 2 cut(s) | 783, 1242 |
| SfaNI | GCATC | 2 cut(s) | 184, 974 |
| SfcI | CTRYAG | 1 cut(s) | 513 |
| SfuI | TTCGAA | 2 cut(s) | 472, 1255 |
| SinI | GGWCC | 1 cut(s) | 1129 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 905 |
| SmlI | CTYRAG | 2 cut(s) | 531, 1147 |
| SmoI | CTYRAG | 2 cut(s) | 531, 1147 |
| SpeI | ACTAGT | 1 cut(s) | 37 |
| SsiI | CCGC | 1 cut(s) | 556 |
| SspI | AATATT | 2 cut(s) | 293, 469 |
| SspMI | CTAG | 5 cut(s) | 29, 38, 59, 1109, 1169 |
| StyD4I | CCNGG | 2 cut(s) | 781, 1240 |
| StyI | CCWWGG | 3 cut(s) | 346, 632, 1125 |
| TaaI | ACNGT | 5 cut(s) | 146, 217, 361, 731, 1042 |
| TaiI | ACGT | 4 cut(s) | 226, 493, 503, 775 |
| TaqI | TCGA | 3 cut(s) | 472, 1255, 1313 |
| TatI | WGTACW | 1 cut(s) | 932 |
| TfiI | GAWTC | 5 cut(s) | 55, 444, 495, 544, 971 |
| Tru1I | TTAA | 5 cut(s) | 527, 1037, 1073, 1184, 1318 |
| Tru9I | TTAA | 5 cut(s) | 527, 1037, 1073, 1184, 1318 |
| TscAI | CASTG | 3 cut(s) | 833, 964, 1270 |
| TseFI | GTSAC | 4 cut(s) | 226, 481, 994, 1267 |
| TseI | GCWGC | 2 cut(s) | 640, 986 |
| Tsp45I | GTSAC | 4 cut(s) | 226, 481, 994, 1267 |
| TspDTI | ATGAA | 3 cut(s) | 436, 1044, 1275 |
| TspRI | CASTG | 3 cut(s) | 833, 964, 1270 |
| Tth111I | GACNNNGTC | 1 cut(s) | 215 |
| VpaK11BI | GGWCC | 1 cut(s) | 1129 |
| XapI | RAATTY | 6 cut(s) | 71, 278, 460, 1032, 1118, 1282 |
| XbaI | TCTAGA | 1 cut(s) | 1108 |
| XceI | RCATGY | 1 cut(s) | 1106 |
| XmiI | GTMKAC | 1 cut(s) | 516 |
| XmnI | GAANNNNTTC | 1 cut(s) | 581 |
| XspI | CTAG | 5 cut(s) | 29, 38, 59, 1109, 1169 |
| ZrmI | AGTACT | 1 cut(s) | 934 |