Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 829 |
| AccI | GTMKAC | 2 cut(s) | 1558, 1588 |
| AccII | CGCG | 2 cut(s) | 624, 1671 |
| AciI | CCGC | 2 cut(s) | 1632, 1646 |
| AclI | AACGTT | 1 cut(s) | 1571 |
| AclWI | GGATC | 5 cut(s) | 1163, 1176, 1237, 1266, 1302 |
| AcoI | YGGCCR | 2 cut(s) | 1683, 1772 |
| AcsI | RAATTY | 4 cut(s) | 32, 252, 365, 1287 |
| AcuI | CTGAAG | 3 cut(s) | 144, 228, 1125 |
| AcyI | GRCGYC | 2 cut(s) | 1564, 1711 |
| AfaI | GTAC | 5 cut(s) | 190, 219, 286, 516, 1550 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1016, 1449, 1488, 1507, 1645 |
| AgsI | TTSAA | 6 cut(s) | 68, 146, 181, 446, 548, 739 |
| AhlI | ACTAGT | 1 cut(s) | 986 |
| AluBI | AGCT | 9 cut(s) | 11, 511, 595, 998, 1022, 1043, 1676, 1692, 1747 |
| AluI | AGCT | 9 cut(s) | 11, 511, 595, 998, 1022, 1043, 1676, 1692, 1747 |
| Alw21I | GWGCWC | 1 cut(s) | 925 |
| Alw26I | GTCTC | 1 cut(s) | 934 |
| AlwI | GGATC | 5 cut(s) | 1163, 1176, 1237, 1266, 1302 |
| AoxI | GGCC | 4 cut(s) | 1479, 1683, 1702, 1772 |
| ApoI | RAATTY | 4 cut(s) | 32, 252, 365, 1287 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1640, 1672 |
| AseI | ATTAAT | 1 cut(s) | 491 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1496 |
| AspLEI | GCGC | 4 cut(s) | 543, 626, 862, 1544 |
| AspS9I | GGNCC | 3 cut(s) | 692, 837, 1750 |
| AsuHPI | GGTGA | 3 cut(s) | 161, 1085, 1139 |
| AsuNHI | GCTAGC | 1 cut(s) | 1628 |
| AvaII | GGWCC | 3 cut(s) | 692, 837, 1750 |
| AxyI | CCTNAGG | 1 cut(s) | 258 |
| BalI | TGGCCA | 1 cut(s) | 1774 |
| BamHI | GGATCC | 1 cut(s) | 1168 |
| BanI | GGYRCC | 1 cut(s) | 829 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 201, 233 |
| BbsI | GAAGAC | 1 cut(s) | 1409 |
| Bbv12I | GWGCWC | 1 cut(s) | 925 |
| BccI | CCATC | 4 cut(s) | 67, 625, 1138, 1713 |
| BceAI | ACGGC | 4 cut(s) | 1533, 1577, 1659, 1698 |
| BciVI | GTATCC | 1 cut(s) | 1600 |
| BclI | TGATCA | 2 cut(s) | 567, 1177 |
| BcoDI | GTCTC | 1 cut(s) | 934 |
| BcuI | ACTAGT | 1 cut(s) | 986 |
| BfaI | CTAG | 5 cut(s) | 78, 951, 987, 1269, 1629 |
| BfoI | RGCGCY | 1 cut(s) | 544 |
| BfuI | GTATCC | 1 cut(s) | 1600 |
| Bme18I | GGWCC | 3 cut(s) | 692, 837, 1750 |
| BmgT120I | GGNCC | 3 cut(s) | 692, 837, 1750 |
| BmiI | GGNNCC | 5 cut(s) | 17, 831, 839, 1170, 1499 |
| BmsI | GCATC | 2 cut(s) | 636, 804 |
| BmtI | GCTAGC | 1 cut(s) | 1632 |
| BpiI | GAAGAC | 1 cut(s) | 1409 |
| BpmI | CTGGAG | 1 cut(s) | 69 |
| Bpu10I | CCTNAGC | 1 cut(s) | 507 |
| BpuEI | CTTGAG | 3 cut(s) | 575, 996, 1029 |
| BsaHI | GRCGYC | 2 cut(s) | 1564, 1711 |
| BsaJI | CCNNGG | 2 cut(s) | 833, 1123 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1016, 1449, 1488, 1507, 1645 |
| Bse1I | ACTGG | 1 cut(s) | 173 |
| Bse21I | CCTNAGG | 1 cut(s) | 258 |
| Bse3DI | GCAATG | 1 cut(s) | 1527 |
| BseDI | CCNNGG | 2 cut(s) | 833, 1123 |
| BseGI | GGATG | 2 cut(s) | 819, 1084 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1016, 1449, 1488, 1507, 1645 |
| BseMI | GCAATG | 1 cut(s) | 1527 |
| BseMII | CTCAG | 5 cut(s) | 249, 419, 498, 945, 1487 |
| BseNI | ACTGG | 1 cut(s) | 173 |
| BseRI | GAGGAG | 1 cut(s) | 1738 |
| BseYI | CCCAGC | 1 cut(s) | 11 |
| BsgI | GTGCAG | 1 cut(s) | 828 |
| Bsh1236I | CGCG | 2 cut(s) | 624, 1671 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1558 |
| BshFI | GGCC | 4 cut(s) | 1481, 1685, 1704, 1774 |
| BshNI | GGYRCC | 1 cut(s) | 829 |
| BsiEI | CGRYCG | 1 cut(s) | 1558 |
| BsiHKAI | GWGCWC | 1 cut(s) | 925 |
| BsiSI | CCGG | 2 cut(s) | 1639, 1682 |
| BslFI | GGGAC | 1 cut(s) | 1608 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1016, 1449, 1488, 1507, 1645 |
| BsmAI | GTCTC | 1 cut(s) | 934 |
| BsmFI | GGGAC | 1 cut(s) | 1608 |
| BsmI | GAATGC | 1 cut(s) | 124 |
| BsnI | GGCC | 4 cut(s) | 1481, 1685, 1704, 1774 |
| Bsp1286I | GDGCHC | 1 cut(s) | 925 |
| Bsp143I | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| BspACI | CCGC | 2 cut(s) | 1632, 1646 |
| BspANI | GGCC | 4 cut(s) | 1481, 1685, 1704, 1774 |
| BspCNI | CTCAG | 5 cut(s) | 250, 418, 499, 944, 1486 |
| BspFNI | CGCG | 2 cut(s) | 624, 1671 |
| BspLI | GGNNCC | 5 cut(s) | 17, 831, 839, 1170, 1499 |
| BspOI | GCTAGC | 1 cut(s) | 1632 |
| BspPI | GGATC | 5 cut(s) | 1163, 1176, 1237, 1266, 1302 |
| BspT107I | GGYRCC | 1 cut(s) | 829 |
| BsrDI | GCAATG | 1 cut(s) | 1527 |
| BsrI | ACTGG | 1 cut(s) | 173 |
| BssECI | CCNNGG | 2 cut(s) | 833, 1123 |
| BssMI | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| BssNI | GRCGYC | 2 cut(s) | 1564, 1711 |
| BssT1I | CCWWGG | 1 cut(s) | 1123 |
| Bst4CI | ACNGT | 5 cut(s) | 277, 346, 1186, 1408, 1770 |
| Bst6I | CTCTTC | 2 cut(s) | 444, 1188 |
| BstACI | GRCGYC | 2 cut(s) | 1564, 1711 |
| BstC8I | GCNNGC | 2 cut(s) | 1630, 1706 |
| BstDEI | CTNAG | 7 cut(s) | 258, 405, 423, 477, 507, 931, 1473 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1486 |
| BstF5I | GGATG | 2 cut(s) | 819, 1084 |
| BstFNI | CGCG | 2 cut(s) | 624, 1671 |
| BstH2I | RGCGCY | 1 cut(s) | 544 |
| BstHHI | GCGC | 4 cut(s) | 543, 626, 862, 1544 |
| BstKTI | GATC | 8 cut(s) | 570, 1171, 1180, 1232, 1274, 1297, 1505, 1698 |
| BstMAI | GTCTC | 1 cut(s) | 934 |
| BstMBI | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| BstMCI | CGRYCG | 1 cut(s) | 1558 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 632, 1517, 1682, 1710 |
| BstNSI | RCATGY | 1 cut(s) | 974 |
| BstUI | CGCG | 2 cut(s) | 624, 1671 |
| BstV2I | GAAGAC | 1 cut(s) | 1409 |
| BstX2I | RGATCY | 3 cut(s) | 1168, 1229, 1271 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1770 |
| BstYI | RGATCY | 3 cut(s) | 1168, 1229, 1271 |
| Bsu36I | CCTNAGG | 1 cut(s) | 258 |
| BsuI | GTATCC | 1 cut(s) | 1600 |
| BsuRI | GGCC | 4 cut(s) | 1481, 1685, 1704, 1774 |
| BtsCI | GGATG | 2 cut(s) | 819, 1084 |
| BtsIMutI | CAGTG | 1 cut(s) | 1413 |
| Cac8I | GCNNGC | 2 cut(s) | 1630, 1706 |
| CfoI | GCGC | 4 cut(s) | 543, 626, 862, 1544 |
| Cfr13I | GGNCC | 3 cut(s) | 692, 837, 1750 |
| CseI | GACGC | 4 cut(s) | 398, 1202, 1553, 1719 |
| Csp6I | GTAC | 5 cut(s) | 189, 218, 285, 515, 1549 |
| CviAII | CATG | 3 cut(s) | 357, 971, 1162 |
| CviQI | GTAC | 5 cut(s) | 189, 218, 285, 515, 1549 |
| DdeI | CTNAG | 7 cut(s) | 258, 405, 423, 477, 507, 931, 1473 |
| DpnI | GATC | 8 cut(s) | 569, 1170, 1179, 1231, 1273, 1296, 1504, 1697 |
| DpnII | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| EaeI | YGGCCR | 2 cut(s) | 1683, 1772 |
| Eam1104I | CTCTTC | 2 cut(s) | 444, 1188 |
| EarI | CTCTTC | 2 cut(s) | 444, 1188 |
| EciI | GGCGGA | 1 cut(s) | 1661 |
| Eco130I | CCWWGG | 1 cut(s) | 1123 |
| Eco47I | GGWCC | 3 cut(s) | 692, 837, 1750 |
| Eco57I | CTGAAG | 3 cut(s) | 144, 228, 1125 |
| Eco81I | CCTNAGG | 1 cut(s) | 258 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1486 |
| EcoRI | GAATTC | 2 cut(s) | 252, 365 |
| EcoT14I | CCWWGG | 1 cut(s) | 1123 |
| ErhI | CCWWGG | 1 cut(s) | 1123 |
| FaeI | CATG | 3 cut(s) | 360, 974, 1165 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1370, 1402 |
| FaqI | GGGAC | 1 cut(s) | 1608 |
| FatI | CATG | 3 cut(s) | 356, 970, 1161 |
| FauNDI | CATATG | 1 cut(s) | 1174 |
| FbaI | TGATCA | 2 cut(s) | 567, 1177 |
| FblI | GTMKAC | 2 cut(s) | 1558, 1588 |
| FokI | GGATG | 2 cut(s) | 826, 1091 |
| FspBI | CTAG | 5 cut(s) | 78, 951, 987, 1269, 1629 |
| GlaI | GCGC | 4 cut(s) | 542, 625, 861, 1543 |
| GsaI | CCCAGC | 1 cut(s) | 15 |
| GsuI | CTGGAG | 1 cut(s) | 69 |
| HaeII | RGCGCY | 1 cut(s) | 544 |
| HaeIII | GGCC | 4 cut(s) | 1481, 1685, 1704, 1774 |
| HapII | CCGG | 2 cut(s) | 1639, 1682 |
| HgaI | GACGC | 4 cut(s) | 398, 1202, 1553, 1719 |
| HhaI | GCGC | 4 cut(s) | 543, 626, 862, 1544 |
| Hin1I | GRCGYC | 2 cut(s) | 1564, 1711 |
| Hin1II | CATG | 3 cut(s) | 360, 974, 1165 |
| Hin6I | GCGC | 4 cut(s) | 541, 624, 860, 1542 |
| HinP1I | GCGC | 4 cut(s) | 541, 624, 860, 1542 |
| HincII | GTYRAC | 5 cut(s) | 782, 992, 1114, 1416, 1559 |
| HindII | GTYRAC | 5 cut(s) | 782, 992, 1114, 1416, 1559 |
| HindIII | AAGCTT | 2 cut(s) | 593, 1674 |
| HinfI | GANTC | 5 cut(s) | 142, 320, 375, 653, 1033 |
| HpaI | GTTAAC | 1 cut(s) | 1416 |
| HpaII | CCGG | 2 cut(s) | 1639, 1682 |
| HphI | GGTGA | 3 cut(s) | 161, 1085, 1139 |
| Hpy166II | GTNNAC | 7 cut(s) | 710, 782, 992, 1114, 1416, 1559, 1589 |
| Hpy188III | TCNNGA | 8 cut(s) | 48, 68, 257, 293, 370, 383, 753, 1269 |
| Hpy8I | GTNNAC | 7 cut(s) | 710, 782, 992, 1114, 1416, 1559, 1589 |
| Hpy99I | CGWCG | 9 cut(s) | 414, 1302, 1516, 1519, 1556, 1563, 1569, 1664, 1713 |
| HpyAV | CCTTC | 6 cut(s) | 290, 408, 545, 731, 759, 1421 |
| HpyCH4III | ACNGT | 5 cut(s) | 277, 346, 1186, 1408, 1770 |
| HpyCH4IV | ACGT | 5 cut(s) | 220, 706, 1412, 1551, 1571 |
| HpyCH4V | TGCA | 6 cut(s) | 83, 503, 649, 797, 809, 974 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 632, 1517, 1682, 1710 |
| HpyF3I | CTNAG | 7 cut(s) | 258, 405, 423, 477, 507, 931, 1473 |
| HpySE526I | ACGT | 5 cut(s) | 220, 706, 1412, 1551, 1571 |
| Hsp92I | GRCGYC | 2 cut(s) | 1564, 1711 |
| Hsp92II | CATG | 3 cut(s) | 360, 974, 1165 |
| HspAI | GCGC | 4 cut(s) | 541, 624, 860, 1542 |
| Ksp22I | TGATCA | 2 cut(s) | 567, 1177 |
| KspAI | GTTAAC | 1 cut(s) | 1416 |
| Kzo9I | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| LmnI | GCTCC | 2 cut(s) | 928, 1019 |
| LweI | GCATC | 2 cut(s) | 636, 804 |
| MaeI | CTAG | 5 cut(s) | 78, 951, 987, 1269, 1629 |
| MaeII | ACGT | 5 cut(s) | 220, 706, 1412, 1551, 1571 |
| MaeIII | GTNAC | 5 cut(s) | 38, 271, 698, 1408, 1729 |
| MalI | GATC | 8 cut(s) | 569, 1170, 1179, 1231, 1273, 1296, 1504, 1697 |
| MboI | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| MflI | RGATCY | 3 cut(s) | 1168, 1229, 1271 |
| MhlI | GDGCHC | 1 cut(s) | 925 |
| MlsI | TGGCCA | 1 cut(s) | 1774 |
| MluNI | TGGCCA | 1 cut(s) | 1774 |
| MlyI | GAGTC | 1 cut(s) | 384 |
| MmeI | TCCRAC | 2 cut(s) | 655, 670 |
| Mox20I | TGGCCA | 1 cut(s) | 1774 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1496 |
| MscI | TGGCCA | 1 cut(s) | 1774 |
| MseI | TTAA | 5 cut(s) | 137, 491, 1220, 1257, 1415 |
| Msp20I | TGGCCA | 1 cut(s) | 1774 |
| MspA1I | CMGCKG | 1 cut(s) | 998 |
| MspI | CCGG | 2 cut(s) | 1639, 1682 |
| Mva1269I | GAATGC | 1 cut(s) | 124 |
| MvnI | CGCG | 2 cut(s) | 624, 1671 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 632, 1517, 1682, 1710 |
| NdeI | CATATG | 1 cut(s) | 1174 |
| NdeII | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| NheI | GCTAGC | 1 cut(s) | 1628 |
| NlaIII | CATG | 3 cut(s) | 360, 974, 1165 |
| NlaIV | GGNNCC | 5 cut(s) | 17, 831, 839, 1170, 1499 |
| NmuCI | GTSAC | 3 cut(s) | 271, 1408, 1729 |
| NspI | RCATGY | 1 cut(s) | 974 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 751, 1564, 1668 |
| PctI | GAATGC | 1 cut(s) | 124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1496 |
| PfeI | GAWTC | 4 cut(s) | 142, 320, 653, 1033 |
| PflFI | GACNNNGTC | 1 cut(s) | 1563 |
| PleI | GAGTC | 1 cut(s) | 383 |
| PpsI | GAGTC | 1 cut(s) | 383 |
| PshBI | ATTAAT | 1 cut(s) | 491 |
| Psp1406I | AACGTT | 1 cut(s) | 1571 |
| PspFI | CCCAGC | 1 cut(s) | 11 |
| PspN4I | GGNNCC | 5 cut(s) | 17, 831, 839, 1170, 1499 |
| PspPI | GGNCC | 3 cut(s) | 692, 837, 1750 |
| PsuI | RGATCY | 3 cut(s) | 1168, 1229, 1271 |
| PsyI | GACNNNGTC | 1 cut(s) | 1563 |
| PvuII | CAGCTG | 1 cut(s) | 998 |
| RsaI | GTAC | 5 cut(s) | 190, 219, 286, 516, 1550 |
| RsaNI | GTAC | 5 cut(s) | 189, 218, 285, 515, 1549 |
| SalI | GTCGAC | 1 cut(s) | 1557 |
| SaqAI | TTAA | 5 cut(s) | 137, 491, 1220, 1257, 1415 |
| Sau3AI | GATC | 8 cut(s) | 567, 1168, 1177, 1229, 1271, 1294, 1502, 1695 |
| Sau96I | GGNCC | 3 cut(s) | 692, 837, 1750 |
| SchI | GAGTC | 1 cut(s) | 384 |
| SduI | GDGCHC | 1 cut(s) | 925 |
| SfaNI | GCATC | 2 cut(s) | 636, 804 |
| SinI | GGWCC | 3 cut(s) | 692, 837, 1750 |
| SmlI | CTYRAG | 3 cut(s) | 590, 1011, 1044 |
| SmoI | CTYRAG | 3 cut(s) | 590, 1011, 1044 |
| SpeI | ACTAGT | 1 cut(s) | 986 |
| SsiI | CCGC | 2 cut(s) | 1632, 1646 |
| SspI | AATATT | 1 cut(s) | 392 |
| SspMI | CTAG | 5 cut(s) | 78, 951, 987, 1269, 1629 |
| StyI | CCWWGG | 1 cut(s) | 1123 |
| TaaI | ACNGT | 5 cut(s) | 277, 346, 1186, 1408, 1770 |
| TaiI | ACGT | 5 cut(s) | 223, 709, 1415, 1554, 1574 |
| TaqII | GACCGA | 2 cut(s) | 1544, 1748 |
| TatI | WGTACW | 1 cut(s) | 188 |
| TfiI | GAWTC | 4 cut(s) | 142, 320, 653, 1033 |
| Tru1I | TTAA | 5 cut(s) | 137, 491, 1220, 1257, 1415 |
| Tru9I | TTAA | 5 cut(s) | 137, 491, 1220, 1257, 1415 |
| TscAI | CASTG | 1 cut(s) | 1413 |
| TseFI | GTSAC | 3 cut(s) | 271, 1408, 1729 |
| Tsp45I | GTSAC | 3 cut(s) | 271, 1408, 1729 |
| TspDTI | ATGAA | 4 cut(s) | 242, 464, 1095, 1113 |
| TspGWI | ACGGA | 2 cut(s) | 20, 313 |
| TspRI | CASTG | 1 cut(s) | 1413 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1563 |
| VpaK11BI | GGWCC | 3 cut(s) | 692, 837, 1750 |
| VspI | ATTAAT | 1 cut(s) | 491 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1486 |
| XapI | RAATTY | 4 cut(s) | 32, 252, 365, 1287 |
| XbaI | TCTAGA | 1 cut(s) | 1268 |
| XceI | RCATGY | 1 cut(s) | 974 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 70 |
| XmiI | GTMKAC | 2 cut(s) | 1558, 1588 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1496 |
| XspI | CTAG | 5 cut(s) | 78, 951, 987, 1269, 1629 |