pycom11g15270

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000370
Physical Location & Seq
Reverse (-)
15857209 .. 15857825
617 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g15270.1

Sequence Viewer

Length: 570 bp
ATGATTTTGGTGTCTTCTGTCAGAACTATGCCGCCTCGTCGGGAACCCCGTCGCTCTTCTGAGCCTATTTTCCCCGATATTACTCAGTTGGGGGAAACTTTTGCTACAGCCCTTCAGTCAGTGATGCGCCCTCCCCAGAGGACTCCTCTGGAGACCATGTACAATCTGAAGTTGGATAAGTTTAAGGGCAGTGAGGGGCACGAGGGCGCAGAGCGCTGGCTAGAACACATAGAGAAGACTTTCCGTGTGCTGCATAATCACGGGAACTTGCCTATGGAGAGGTGGGTCGAGACGACCTCGTGGTTTCTGGATACGGAGTTGGCAGCTTGGTGGGAGCAGGAGCTTCGTAGGTTGACTCCGGATCAGAGGATTGATTGGAATGTTTTTACGGAGTTGTTTAGGAGGAGATATGTGCCCCCTGAGTACATCGATAGAAAGAAGCAGGAGTTTTCCGAACTGAAACAGCGGAAGATGTCAGCGAATGAGTACTACCGTAAGTTTACGGACTTGTCTCGTTACCATCCTGATGTCGCTGAAGTGGCGTTCTATGGCGTCTACAGTCCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

190

Amino Acids

22.78

Weight (kDa)

7.96

Isoelectric Point (pI)

74.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 103 - 176 5.4e-13 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 555
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 2 cut(s) 32, 466
AclWI GGATC 1 cut(s) 369
AcuI CTGAAG 3 cut(s) 98, 188, 555
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 3 cut(s) 161, 425, 488
AfeI AGCGCT 1 cut(s) 215
AluBI AGCT 2 cut(s) 326, 343
AluI AGCT 2 cut(s) 326, 343
Alw26I GTCTC 3 cut(s) 146, 284, 516
AlwI GGATC 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 358
Aor51HI AGCGCT 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 250, 323
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 3 cut(s) 129, 209, 216
BaeGI GKGCMC 2 cut(s) 201, 417
BauI CACGAG 2 cut(s) 200, 298
BbsI GAAGAC 2 cut(s) 6, 242
BbvI GCAGC 2 cut(s) 237, 335
BccI CCATC 1 cut(s) 528
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciVI GTATCC 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 146, 284, 516
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 2 cut(s) 105, 556
BfoI RGCGCY 1 cut(s) 217
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 3 cut(s) 32, 251, 324
BlsI GCNGC 3 cut(s) 33, 252, 325
BmcAI AGTACT 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 6, 242
BplI GAGNNNNNCTC 4 cut(s) 130, 162, 281, 313
BpmI CTGGAG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
BseAI TCCGGA 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 429
BseGI GGATG 1 cut(s) 520
BseMII CTCAG 3 cut(s) 51, 98, 411
BseRI GAGGAG 2 cut(s) 135, 418
BseSI GKGCMC 2 cut(s) 201, 417
BseXI GCAGC 2 cut(s) 237, 335
BshVI ATCGAT 1 cut(s) 429
BsiSI CCGG 1 cut(s) 359
BsmAI GTCTC 3 cut(s) 146, 284, 516
BsmBI CGTCTC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 201, 417
Bsp13I TCCGGA 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 2 cut(s) 32, 466
BspCNI CTCAG 3 cut(s) 52, 97, 412
BspDI ATCGAT 1 cut(s) 429
BspEI TCCGGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 159
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 552
BssSI CACGAG 2 cut(s) 200, 298
Bst2BI CACGAG 2 cut(s) 200, 298
Bst4CI ACNGT 3 cut(s) 494, 560, 567
Bst6I CTCTTC 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 552
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 3 cut(s) 60, 84, 420
BstF5I GGATG 1 cut(s) 520
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 3 cut(s) 129, 209, 216
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 3 cut(s) 146, 284, 516
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 2 cut(s) 213, 539
BstSFI CTRYAG 2 cut(s) 105, 556
BstSLI GKGCMC 2 cut(s) 201, 417
BstV1I GCAGC 2 cut(s) 237, 335
BstV2I GAAGAC 2 cut(s) 6, 242
Bsu15I ATCGAT 1 cut(s) 429
BsuI GTATCC 1 cut(s) 304
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 1 cut(s) 520
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 126, 196
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 3 cut(s) 129, 209, 216
ClaI ATCGAT 1 cut(s) 429
CseI GACGC 1 cut(s) 541
Csp6I GTAC 3 cut(s) 160, 424, 487
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 64, 110, 220, 326, 343
CviKI_1 RGCY 5 cut(s) 64, 110, 220, 326, 343
CviQI GTAC 3 cut(s) 160, 424, 487
DdeI CTNAG 3 cut(s) 60, 84, 420
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 146
Eco47III AGCGCT 1 cut(s) 215
Eco57I CTGAAG 3 cut(s) 98, 188, 555
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 1 cut(s) 160
FaiI YATR 7 cut(s) 29, 158, 230, 255, 275, 411, 549
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 32, 251, 324
FokI GGATG 1 cut(s) 507
Fsp4HI GCNGC 3 cut(s) 32, 251, 324
FspBI CTAG 1 cut(s) 221
GlaI GCGC 3 cut(s) 128, 208, 215
GluI GCNGC 3 cut(s) 32, 251, 324
GsuI CTGGAG 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 217
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 541
HhaI GCGC 3 cut(s) 129, 209, 216
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 3 cut(s) 127, 207, 214
HinP1I GCGC 3 cut(s) 127, 207, 214
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 2 cut(s) 142, 355
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 4 cut(s) 354, 501, 556, 563
Hpy188I TCNGA 5 cut(s) 23, 61, 168, 366, 454
Hpy188III TCNNGA 6 cut(s) 41, 149, 289, 308, 359, 524
Hpy8I GTNNAC 4 cut(s) 354, 501, 556, 563
Hpy99I CGWCG 2 cut(s) 42, 54
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 3 cut(s) 494, 560, 567
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 539
HpyF3I CTNAG 3 cut(s) 60, 84, 420
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 3 cut(s) 127, 207, 214
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 1 cut(s) 361
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 334, 340
LpnPI CCDG 9 cut(s) 134, 149, 202, 293, 323, 372, 428, 432, 537
Lsp1109I GCAGC 2 cut(s) 237, 335
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 515
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 4 cut(s) 6, 48, 247, 481
MhlI GDGCHC 2 cut(s) 201, 417
MlyI GAGTC 2 cut(s) 136, 349
MmeI TCCRAC 1 cut(s) 153
MroI TCCGGA 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 213, 539
NdeII GATC 1 cut(s) 361
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 239
PkrI GCNGC 3 cut(s) 33, 252, 325
PleI GAGTC 2 cut(s) 136, 349
PpsI GAGTC 2 cut(s) 136, 349
PspN4I GGNNCC 1 cut(s) 45
RsaI GTAC 3 cut(s) 161, 425, 488
RsaNI GTAC 3 cut(s) 160, 424, 487
RseI CAYNNNNRTG 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 3 cut(s) 32, 251, 324
Sau3AI GATC 1 cut(s) 361
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 2 cut(s) 136, 349
SduI GDGCHC 2 cut(s) 201, 417
SetI ASST 5 cut(s) 284, 299, 328, 345, 353
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 2 cut(s) 105, 556
SmiMI CAYNNNNRTG 1 cut(s) 525
SsiI CCGC 2 cut(s) 32, 466
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 494, 560, 567
TaqI TCGA 2 cut(s) 288, 429
TatI WGTACW 3 cut(s) 159, 423, 486
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 126, 196
TseI GCWGC 2 cut(s) 250, 323
TspGWI ACGGA 4 cut(s) 233, 329, 404, 518
TspRI CASTG 2 cut(s) 126, 196
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 221
ZrmI AGTACT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.