Rroxscaffold_7G00196040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000370
Physical Location & Seq
Reverse (-)
38723433 .. 38729611
6179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196040.1

Sequence Viewer

Length: 312 bp
ATGTCTAACCAGAAAAGCGGGCAACCATGGAAGCAGCAAACAAGGAGAGACGCATTTCAAAAGCCGACAACATTAAAAGGAAAGGAGGTAGCAAGAGGCCCAATTCGGTGTTACAACCGTGGAGAAATGGGGCACATGTCTAATGCTTGCCCAAAGCCACGTCGCCTTCCGGGATCTTGTTACAATTGTGGCAAGATGGGACATTTCTCAAATCGGTGCGATGCACCGAGGCAAAAAAATAACCCACCACCTCGTCCTGTTCAGCTAAATGCCATAGCTTGTGAGAACATCGTGATGGAAGGTAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.6

Weight (kDa)

9.92

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 59 - 74 4.8e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AclWI GGATC 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 59
AjiI CACGTC 1 cut(s) 161
AluBI AGCT 2 cut(s) 265, 278
AluI AGCT 2 cut(s) 265, 278
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 190, 289
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 42
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 26, 118, 227
BseDI CCNNGG 3 cut(s) 26, 118, 227
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 26, 118, 227
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 20, 148
BstDSI CCRYGG 2 cut(s) 26, 118
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 26, 118
BtgZI GCGATG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 20, 148
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 1 cut(s) 59
CviAII CATG 2 cut(s) 27, 136
CviJI RGCY 5 cut(s) 64, 99, 157, 265, 278
CviKI_1 RGCY 5 cut(s) 64, 99, 157, 265, 278
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 30, 139
FaiI YATR 3 cut(s) 28, 137, 275
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 26, 135
FauI CCCGC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 170
HgaI GACGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 30, 139
HpaII CCGG 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 176, 293
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 2 cut(s) 30, 139
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 3 cut(s) 23, 183, 270
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 211
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 3 cut(s) 110, 179, 302
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 2 cut(s) 102, 184
MnlI CCTC 4 cut(s) 79, 89, 222, 261
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 184
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 1 cut(s) 26
NdeII GATC 1 cut(s) 173
NlaIII CATG 2 cut(s) 30, 139
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 1 cut(s) 36
PscI ACATGT 1 cut(s) 135
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 135
SetI ASST 6 cut(s) 90, 163, 253, 267, 280, 304
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 2 cut(s) 102, 184
SsiI CCGC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 163
TasI AATT 2 cut(s) 102, 184
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseI GCWGC 1 cut(s) 34
XceI RCATGY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.