pycom13g25960

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000370
Physical Location & Seq
Forward (+)
22687540 .. 22688952
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g25960.4

Sequence Viewer

Length: 945 bp
ATGCATAGAGAGCTCATAACCTGCACCACCGGTGTTAGTGTTCCCGCCCAGAACGCTCATCTTGGATCCAAGTTAGGTGCACAGTCCTGTCGTACAGACCACTTTAGGTGGTTCCGACTTGTAGATGACCCGCGATTATTCGCCCATCCTGTCGTACAGACCACTTTAGGTGGTTCCAACTCGTGTGTAGGTGTAGTGACTCCGGCTGACAAATTACATGGCATTGATTGGCATTACCTGAGTACTTGCATTTTGTTTAGATGTATATATTCTATTTTTCTGGGATGTATACAGTATATATTCTATTTTTCTGGGATGTATACAGATTTTACGCTTTGTTTTTGCCCACTCACGTTTTCTGTTTTGCGCCCCTCCAGTTCCCGGCTTATCAGACAGATTATCACCAGTGTAGGACCACCTTTGGGTGTGTTATTTAGTGTTTGTTTCTTCCGGACTGCACTAGGTTTTCCGGGCTCGGAACATTGTTCTTCACACTTACGCTTGCACATGTATGTTATTTACGCAGTGTATAGCTTGGTTTTTATTTATTCGTACTTTTATTATTATTTATTAGGTTCCGCACTGTGTACATGGTTACGTCACTTCTACGTGACGGTTTGGCAGTCCTGTACTTTTGTGAGTATTCTAAAGGTTTTGGTGTCTTGTGTCAGAACTATGCCGCCTCATAGGGAACCACGTCGCTCTGCTGAGCCTAGTTTCCCCAATGTAGCTCAGCTGGGGGAAGCTATCGCCACTGCTATTCAGTCGGCGCTCCGTGATGGATCGTTCTTAAACCGGGGATTAGGAGGGATTGCTAAACACTCTAAACTGACTCAAAATCGTAAAAACAAAAAAACACCAAAACAAACCAAAAGACTCAAAACAGCAAACAAACACTCAAAACTCTGGACGAAATTAAGTTATCACTTGACTCAAAACACTTAA

Protein Analysis

315

Amino Acids

35.59

Weight (kDa)

9.72

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AccI GTMKAC 2 cut(s) 289, 320
AccII CGCG 1 cut(s) 133
AccIII TCCGGA 1 cut(s) 450
AciI CCGC 4 cut(s) 45, 131, 579, 680
AclWI GGATC 3 cut(s) 60, 73, 790
AfaI GTAC 6 cut(s) 94, 156, 244, 554, 589, 631
AfiI CCNNNNNNNGG 2 cut(s) 381, 422
AflIII ACRYGT 1 cut(s) 507
AgeI ACCGGT 1 cut(s) 29
AjiI CACGTC 1 cut(s) 698
AluBI AGCT 5 cut(s) 13, 534, 731, 736, 746
AluI AGCT 5 cut(s) 13, 534, 731, 736, 746
Alw21I GWGCWC 2 cut(s) 15, 82
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 3 cut(s) 60, 73, 790
Aor13HI TCCGGA 1 cut(s) 450
ApaLI GTGCAC 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 29
AspLEI GCGC 2 cut(s) 369, 772
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 3 cut(s) 382, 471, 797
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 82
BamHI GGATCC 1 cut(s) 65
BanII GRGCYC 2 cut(s) 15, 476
BauI CACGAG 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 15, 82
BccI CCATC 2 cut(s) 153, 773
BcnI CCSGG 3 cut(s) 382, 471, 797
BfaI CTAG 2 cut(s) 461, 714
BfoI RGCGCY 1 cut(s) 773
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 680
BlpI GCTNAGC 2 cut(s) 708, 732
BlsI GCNGC 1 cut(s) 681
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 3 cut(s) 382, 471, 797
Bme18I GGWCC 1 cut(s) 413
BmgBI CACGTC 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 5 cut(s) 67, 113, 175, 577, 693
BmrFI CCNGG 3 cut(s) 382, 471, 797
BpmI CTGGAG 1 cut(s) 358
Bpu1102I GCTNAGC 2 cut(s) 708, 732
BpuMI CCSGG 3 cut(s) 382, 471, 797
BsaAI YACGTR 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 796
BsaWI WCCGGW 2 cut(s) 29, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 422
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 375, 405
BseAI TCCGGA 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 796
BseGI GGATG 3 cut(s) 145, 290, 321
BseLI CCNNNNNNNGG 2 cut(s) 381, 422
BseMII CTCAG 3 cut(s) 230, 699, 746
BseNI ACTGG 2 cut(s) 375, 405
BseSI GKGCMC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 736
BsgI GTGCAG 2 cut(s) 7, 441
Bsh1236I CGCG 1 cut(s) 133
BshTI ACCGGT 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 15, 82
BsiSI CCGG 6 cut(s) 30, 203, 382, 451, 470, 796
BslI CCNNNNNNNGG 2 cut(s) 381, 422
Bsp1286I GDGCHC 3 cut(s) 15, 82, 476
Bsp13I TCCGGA 1 cut(s) 450
Bsp1407I TGTACA 1 cut(s) 587
Bsp143I GATC 2 cut(s) 65, 782
Bsp1720I GCTNAGC 2 cut(s) 708, 732
BspACI CCGC 4 cut(s) 45, 131, 579, 680
BspCNI CTCAG 3 cut(s) 231, 700, 745
BspEI TCCGGA 1 cut(s) 450
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 5 cut(s) 67, 113, 175, 577, 693
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 3 cut(s) 60, 73, 790
BsrFI RCCGGY 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 587
BsrI ACTGG 2 cut(s) 375, 405
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 2 cut(s) 65, 782
BssNAI GTATAC 2 cut(s) 290, 321
BssSI CACGAG 1 cut(s) 181
Bst1107I GTATAC 2 cut(s) 290, 321
Bst2BI CACGAG 1 cut(s) 181
Bst4CI ACNGT 4 cut(s) 84, 294, 585, 616
BstAUI TGTACA 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 3 cut(s) 239, 708, 732
BstF5I GGATG 3 cut(s) 145, 290, 321
BstFNI CGCG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 2 cut(s) 369, 772
BstKTI GATC 2 cut(s) 68, 785
BstMBI GATC 2 cut(s) 65, 782
BstMWI GCNNNNNNNGC 2 cut(s) 10, 53
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 3 cut(s) 380, 469, 795
BstSLI GKGCMC 1 cut(s) 82
BstUI CGCG 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZ17I GTATAC 2 cut(s) 290, 321
BtrI CACGTC 1 cut(s) 698
BtsCI GGATG 3 cut(s) 145, 290, 321
BtsI GCAGTG 2 cut(s) 531, 753
BtsIMutI CAGTG 4 cut(s) 412, 531, 581, 753
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 503
CfoI GCGC 2 cut(s) 369, 772
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 6 cut(s) 93, 155, 243, 553, 588, 630
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 3 cut(s) 218, 508, 591
CviJI RGCY 9 cut(s) 13, 206, 385, 474, 534, 712, 731, 736, 746
CviKI_1 RGCY 9 cut(s) 13, 206, 385, 474, 534, 712, 731, 736, 746
CviQI GTAC 6 cut(s) 93, 155, 243, 553, 588, 630
DdeI CTNAG 3 cut(s) 239, 708, 732
DpnI GATC 2 cut(s) 67, 784
DpnII GATC 2 cut(s) 65, 782
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 15, 476
Eco47I GGWCC 1 cut(s) 413
Eco53kI GAGCTC 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 15, 476
FaeI CATG 3 cut(s) 221, 511, 594
FatI CATG 3 cut(s) 217, 507, 590
FauI CCCGC 2 cut(s) 52, 138
FblI GTMKAC 2 cut(s) 289, 320
Fnu4HI GCNGC 1 cut(s) 680
FokI GGATG 3 cut(s) 132, 297, 328
FriOI GRGCYC 2 cut(s) 15, 476
Fsp4HI GCNGC 1 cut(s) 680
FspBI CTAG 2 cut(s) 461, 714
GlaI GCGC 2 cut(s) 368, 771
GluI GCNGC 1 cut(s) 680
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 773
HapII CCGG 6 cut(s) 30, 203, 382, 451, 470, 796
HhaI GCGC 2 cut(s) 369, 772
Hin1II CATG 3 cut(s) 221, 511, 594
Hin6I GCGC 2 cut(s) 367, 770
HinP1I GCGC 2 cut(s) 367, 770
HinfI GANTC 4 cut(s) 199, 832, 876, 931
HpaII CCGG 6 cut(s) 30, 203, 382, 451, 470, 796
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 4 cut(s) 80, 290, 321, 588
Hpy188I TCNGA 4 cut(s) 116, 392, 478, 671
Hpy188III TCNNGA 2 cut(s) 451, 907
Hpy8I GTNNAC 4 cut(s) 80, 290, 321, 588
Hpy99I CGWCG 1 cut(s) 702
HpyCH4III ACNGT 4 cut(s) 84, 294, 585, 616
HpyCH4IV ACGT 4 cut(s) 353, 598, 609, 697
HpyCH4V TGCA 6 cut(s) 4, 24, 80, 249, 458, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 53
HpyF3I CTNAG 3 cut(s) 239, 708, 732
HpySE526I ACGT 4 cut(s) 353, 598, 609, 697
Hsp92II CATG 3 cut(s) 221, 511, 594
HspAI GCGC 2 cut(s) 367, 770
Kpn2I TCCGGA 1 cut(s) 450
Kzo9I GATC 2 cut(s) 65, 782
LmnI GCTCC 1 cut(s) 777
MaeI CTAG 2 cut(s) 461, 714
MaeII ACGT 4 cut(s) 353, 598, 609, 697
MaeIII GTNAC 4 cut(s) 196, 594, 599, 610
MalI GATC 2 cut(s) 67, 784
MboI GATC 2 cut(s) 65, 782
MboII GAAGA 2 cut(s) 439, 480
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 3 cut(s) 15, 82, 476
MluCI AATT 2 cut(s) 212, 914
MlyI GAGTC 4 cut(s) 193, 826, 870, 925
MmeI TCCRAC 2 cut(s) 139, 201
MnlI CCTC 3 cut(s) 382, 693, 800
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 450
MseI TTAA 3 cut(s) 791, 917, 943
MslI CAYNNNNRTG 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 736
MspI CCGG 6 cut(s) 30, 203, 382, 451, 470, 796
MspR9I CCNGG 3 cut(s) 382, 471, 797
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 10, 53
NciI CCSGG 3 cut(s) 382, 471, 797
NdeII GATC 2 cut(s) 65, 782
NlaIII CATG 3 cut(s) 221, 511, 594
NlaIV GGNNCC 5 cut(s) 67, 113, 175, 577, 693
NmuCI GTSAC 3 cut(s) 196, 599, 610
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 511
PciI ACATGT 1 cut(s) 507
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 1 cut(s) 681
PleI GAGTC 4 cut(s) 193, 826, 870, 925
PpsI GAGTC 4 cut(s) 193, 826, 870, 925
Ppu21I YACGTR 1 cut(s) 610
PscI ACATGT 1 cut(s) 507
Psp124BI GAGCTC 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 736
PspN4I GGNNCC 5 cut(s) 67, 113, 175, 577, 693
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 736
RsaI GTAC 6 cut(s) 94, 156, 244, 554, 589, 631
RsaNI GTAC 6 cut(s) 93, 155, 243, 553, 588, 630
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 791, 917, 943
SatI GCNGC 1 cut(s) 680
Sau3AI GATC 2 cut(s) 65, 782
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 4 cut(s) 193, 826, 870, 925
ScrFI CCNGG 3 cut(s) 382, 471, 797
SduI GDGCHC 3 cut(s) 15, 82, 476
SgrAI CRCCGGYG 1 cut(s) 29
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 2 cut(s) 212, 914
SsiI CCGC 4 cut(s) 45, 131, 579, 680
SspMI CTAG 2 cut(s) 461, 714
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 3 cut(s) 380, 469, 795
TaaI ACNGT 4 cut(s) 84, 294, 585, 616
TaiI ACGT 4 cut(s) 356, 601, 612, 700
TasI AATT 2 cut(s) 212, 914
TatI WGTACW 3 cut(s) 242, 587, 629
TauI GCSGC 1 cut(s) 682
Tru1I TTAA 3 cut(s) 791, 917, 943
Tru9I TTAA 3 cut(s) 791, 917, 943
TscAI CASTG 4 cut(s) 412, 531, 588, 760
TseFI GTSAC 3 cut(s) 196, 599, 610
Tsp45I GTSAC 3 cut(s) 196, 599, 610
TspGWI ACGGA 1 cut(s) 764
TspRI CASTG 4 cut(s) 412, 531, 588, 760
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 413
XceI RCATGY 1 cut(s) 511
XmiI GTMKAC 2 cut(s) 289, 320
XspI CTAG 2 cut(s) 461, 714
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.