pycom01g00010
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000370
Physical Location & Seq
Reverse (-)
5421 .. 5912
492 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g00010.1

Sequence Viewer

Length: 492 bp
ATGTATAATCTGAAGTTGGATAAGTTTAAGGGCAGTGAGGGGCATGAGAATGCAGAGCGCTGGCTAGAACACGTAGAGAAGACCTTCCGTGTATTGCATAACCAGGGAAATCTCCCTATGGAGAGGTGGGTCGAGACGACCACATGGTTCCTGGATACTGAGTCTGCAGCTTGGTGGGAGCAGGCGCTTCGTAGGTTGACTCCAGAGCAGAGGACGGATTGGAATGTTTTTACAGATTTGTTCAAAAGGAGGTATGTGCCCCCTGAGTACATCGATAGAAAGAAACAGGAGTTTACTGAACTGAAGCAGCGGAAGATGTCAGCGAATGAGTACTACCGCAAGTTTACGGATTTGTCTCGTTATCATCCTGATGTCGCTGGTAATCCGGCGGAGATGCTCCGTCTCTTCCGCCAGGGTACTAAGAAGAAATGGCGTTCGATGGCGACTGCTGTCCACAGCGGGACTTACCAGGACTTCTATGAGATATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

164

Amino Acids

19.88

Weight (kDa)

9.12

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 48 - 139 2.4e-15 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 310, 337, 389, 409, 459
AcuI CTGAAG 2 cut(s) 32, 323
AfaI GTAC 3 cut(s) 269, 332, 418
AfeI AGCGCT 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 4 cut(s) 102, 150, 411, 468
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 3 cut(s) 128, 360, 407
Aor51HI AGCGCT 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 167, 307
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 2 cut(s) 60, 187
BaeGI GKGCMC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 179, 319
BccI CCATC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 4 cut(s) 104, 152, 413, 470
BciVI GTATCC 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 128, 360, 407
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 2 cut(s) 61, 188
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 2 cut(s) 168, 308
BlsI GCNGC 2 cut(s) 169, 309
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 4 cut(s) 104, 152, 413, 470
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 4 cut(s) 104, 152, 413, 470
BmsI GCATC 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 103, 412
BseBI CCWGG 4 cut(s) 104, 152, 413, 470
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 103, 412
BseGI GGATG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 150, 255
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 2 cut(s) 179, 319
BshVI ATCGAT 1 cut(s) 273
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 1 cut(s) 475
BsmAI GTCTC 3 cut(s) 128, 360, 407
BsmBI CGTCTC 2 cut(s) 128, 407
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 261
BspACI CCGC 5 cut(s) 310, 337, 389, 409, 459
BspCNI CTCAG 2 cut(s) 151, 256
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 103, 412
Bst2UI CCWGG 4 cut(s) 104, 152, 413, 470
Bst6I CTCTTC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 62, 183
BstDEI CTNAG 3 cut(s) 159, 264, 420
BstF5I GGATG 1 cut(s) 364
BstH2I RGCGCY 2 cut(s) 61, 188
BstHHI GCGC 2 cut(s) 60, 187
BstMAI GTCTC 3 cut(s) 128, 360, 407
BstNI CCWGG 4 cut(s) 104, 152, 413, 470
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 102, 150, 411, 468
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 179, 319
BstV2I GAAGAC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 273
BsuI GTATCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 62, 183
CfoI GCGC 2 cut(s) 60, 187
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 3 cut(s) 268, 331, 417
CviAII CATG 2 cut(s) 44, 144
CviJI RGCY 2 cut(s) 64, 170
CviKI_1 RGCY 2 cut(s) 64, 170
CviQI GTAC 3 cut(s) 268, 331, 417
DdeI CTNAG 3 cut(s) 159, 264, 420
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
EciI GGCGGA 2 cut(s) 398, 404
Eco47III AGCGCT 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 32, 323
EcoRII CCWGG 4 cut(s) 102, 150, 411, 468
Esp3I CGTCTC 2 cut(s) 128, 407
FaeI CATG 2 cut(s) 47, 147
FaiI YATR 8 cut(s) 6, 45, 99, 119, 145, 255, 480, 487
FaqI GGGAC 1 cut(s) 475
FatI CATG 2 cut(s) 43, 143
FauI CCCGC 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 168, 308
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 168, 308
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 59, 186
GluI GCNGC 2 cut(s) 168, 308
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 2 cut(s) 61, 188
HapII CCGG 1 cut(s) 386
HhaI GCGC 2 cut(s) 60, 187
Hin1II CATG 2 cut(s) 47, 147
Hin6I GCGC 2 cut(s) 58, 185
HinP1I GCGC 2 cut(s) 58, 185
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 2 cut(s) 161, 199
HpaII CCGG 1 cut(s) 386
Hpy166II GTNNAC 4 cut(s) 198, 294, 345, 454
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 133, 203, 368
Hpy8I GTNNAC 4 cut(s) 198, 294, 345, 454
HpyAV CCTTC 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 53, 97, 167
HpyF3I CTNAG 3 cut(s) 159, 264, 420
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 2 cut(s) 47, 147
HspAI GCGC 2 cut(s) 58, 185
LmnI GCTCC 2 cut(s) 178, 402
Lsp1109I GCAGC 2 cut(s) 179, 319
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 72
MboII GAAGA 4 cut(s) 91, 325, 397, 436
MhlI GDGCHC 1 cut(s) 261
MlyI GAGTC 2 cut(s) 170, 193
MnlI CCTC 4 cut(s) 31, 117, 204, 243
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 2 cut(s) 48, 369
MspA1I CMGCKG 2 cut(s) 310, 459
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 4 cut(s) 104, 152, 413, 470
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 4 cut(s) 104, 152, 413, 470
NlaIII CATG 2 cut(s) 47, 147
NlaIV GGNNCC 1 cut(s) 149
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 2 cut(s) 169, 309
PleI GAGTC 2 cut(s) 169, 193
PpsI GAGTC 2 cut(s) 169, 193
Ppu21I YACGTR 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 449
Psp6I CCWGG 4 cut(s) 102, 150, 411, 468
PspGI CCWGG 4 cut(s) 102, 150, 411, 468
PspN4I GGNNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 3 cut(s) 269, 332, 418
RsaNI GTAC 3 cut(s) 268, 331, 417
RseI CAYNNNNRTG 2 cut(s) 48, 369
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 168, 308
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 2 cut(s) 170, 193
ScrFI CCNGG 4 cut(s) 104, 152, 413, 470
SduI GDGCHC 1 cut(s) 261
SetI ASST 6 cut(s) 75, 86, 128, 172, 197, 254
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 2 cut(s) 48, 369
SsiI CCGC 5 cut(s) 310, 337, 389, 409, 459
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 4 cut(s) 102, 150, 411, 468
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 132, 273, 437
TatI WGTACW 2 cut(s) 267, 330
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 167, 307
TspGWI ACGGA 4 cut(s) 77, 230, 362, 389
TspRI CASTG 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.