pycom03g11760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000370
Physical Location & Seq
Forward (+)
11784661 .. 11785292
632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11760.1

Sequence Viewer

Length: 591 bp
ATGTATAATCTGAAATTGGATAAGTTCGAAGGTAATGAGGGTCATGAGGGCGCAGAGCGATGGTTAGAGCACATTGAGAAGACTTTTCGTGTGTTGCACAATCAGGGGAACCTTCCTGTTGAGAGGTGGGTCGAGACGACCTCATGGTTTTTGGGTACGGAGTCTGCAGCCTGGTGGGAGCAGGAACTCCGTCGCTTGACTTCAGCTGAGAGGACTGATTGGGATGTTTTCAAAGAGTTATTCAAGAGAAGGTTTGTGCCTCCTGAGTATGTTGATCGTAAGAAGCAGGAGTTCACTAAGCTGAGACAGGGGAAGATGACGGCTAATGAGTACTATCGCAGGTTCACTGATTTGTCTCGTTACCATCCTGACGTTGCTGGTAATCCGGCGGAGATGCTTCGTCGTTTCCGCCTAGGTACTAAGAAGAAGTGGCGTTCGATGGCGACTACTACCCACTGTGATACCTACCAGGATTTCTATGAGATATTGTTGAGGATTGAGGATTCTGAGAACATGCCGAGCGAGAGTGAGGAAGAAGAAAAAGATGGTAATCAGAAGAAAGATGACAAGGGTAAAGAGGGGTGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

23.71

Weight (kDa)

6.04

Isoelectric Point (pI)

69.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 48 - 139 1.3e-15 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AciI CCGC 2 cut(s) 389, 409
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 3 cut(s) 157, 332, 418
AgsI TTSAA 2 cut(s) 232, 244
AjnI CCWGG 2 cut(s) 170, 468
AluBI AGCT 2 cut(s) 206, 301
AluI AGCT 2 cut(s) 206, 301
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 3 cut(s) 128, 298, 360
ApeKI GCWGC 1 cut(s) 167
AspA2I CCTAGG 1 cut(s) 412
AspLEI GCGC 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 27
AvrII CCTAGG 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 179
BccI CCATC 4 cut(s) 54, 372, 433, 539
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 2 cut(s) 172, 470
BcoDI GTCTC 3 cut(s) 128, 298, 360
BfaI CTAG 2 cut(s) 413, 589
BfmI CTRYAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 1 cut(s) 168
BlnI CCTAGG 1 cut(s) 412
BlsI GCNGC 1 cut(s) 169
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 172, 470
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 172, 470
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 86
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu14I TTCGAA 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 549
BsaJI CCNNGG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 2 cut(s) 172, 470
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 2 cut(s) 229, 364
BseJI GATNNNNATC 1 cut(s) 549
BseMII CTCAG 4 cut(s) 198, 255, 293, 498
BseXI GCAGC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 128, 298, 360
BsmBI CGTCTC 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 2 cut(s) 389, 409
BspCNI CTCAG 4 cut(s) 199, 256, 294, 499
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 110
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 172, 470
Bst4CI ACNGT 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 27
BstDEI CTNAG 6 cut(s) 207, 264, 297, 302, 420, 507
BstF5I GGATG 2 cut(s) 229, 364
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 3 cut(s) 128, 298, 360
BstMBI GATC 1 cut(s) 274
BstNI CCWGG 2 cut(s) 172, 470
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 170, 468
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 229, 364
BtsIMutI CAGTG 2 cut(s) 345, 454
BveI ACCTGC 1 cut(s) 330
CciI TCATGA 1 cut(s) 43
CfoI GCGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 156, 331, 417
CviAII CATG 3 cut(s) 44, 144, 514
CviJI RGCY 5 cut(s) 170, 206, 301, 323, 586
CviKI_1 RGCY 5 cut(s) 170, 206, 301, 323, 586
CviQI GTAC 3 cut(s) 156, 331, 417
DdeI CTNAG 6 cut(s) 207, 264, 297, 302, 420, 507
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EciI GGCGGA 2 cut(s) 398, 404
Eco130I CCWWGG 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 170, 468
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 47, 147, 517
FaiI YATR 6 cut(s) 6, 45, 145, 270, 480, 515
FatI CATG 3 cut(s) 43, 143, 513
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 236, 351
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 413, 589
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 168
HapII CCGG 1 cut(s) 386
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 47, 147, 517
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 2 cut(s) 161, 503
HpaII CCGG 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 294, 345
Hpy188I TCNGA 3 cut(s) 12, 508, 555
Hpy188III TCNNGA 5 cut(s) 44, 133, 244, 263, 368
Hpy8I GTNNAC 2 cut(s) 294, 345
Hpy99I CGWCG 2 cut(s) 195, 405
HpyAV CCTTC 3 cut(s) 23, 122, 243
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 2 cut(s) 97, 167
HpyF3I CTNAG 6 cut(s) 207, 264, 297, 302, 420, 507
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 3 cut(s) 47, 147, 517
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 384
MaeI CTAG 2 cut(s) 413, 589
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 359
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 6 cut(s) 91, 325, 436, 545, 548, 568
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 172, 470
MvaI CCWGG 2 cut(s) 172, 470
NdeII GATC 1 cut(s) 274
NlaIII CATG 3 cut(s) 47, 147, 517
NlaIV GGNNCC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 543
NspI RCATGY 1 cut(s) 517
NspV TTCGAA 1 cut(s) 27
PagI TCATGA 1 cut(s) 43
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 170, 468
PspGI CCWGG 2 cut(s) 170, 468
PspN4I GGNNCC 1 cut(s) 110
PstI CTGCAG 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 3 cut(s) 157, 332, 418
RsaNI GTAC 3 cut(s) 156, 331, 417
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 172, 470
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 27
Sse9I AATT 1 cut(s) 14
SsiI CCGC 2 cut(s) 389, 409
SspMI CTAG 2 cut(s) 413, 589
StyD4I CCNGG 2 cut(s) 170, 468
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 375
TaqI TCGA 3 cut(s) 27, 132, 437
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 503
TscAI CASTG 2 cut(s) 352, 461
TseI GCWGC 1 cut(s) 167
TspGWI ACGGA 2 cut(s) 173, 179
TspRI CASTG 2 cut(s) 352, 461
XceI RCATGY 1 cut(s) 517
XmaJI CCTAGG 1 cut(s) 412
XspI CTAG 2 cut(s) 413, 589
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.