pycom05g14500

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000370
Physical Location & Seq
Reverse (-)
18032894 .. 18034493
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14500.2

Sequence Viewer

Length: 621 bp
ATGTGTATTTGGTGCTGTGGACGCACAGGTAAGTGCCAGGTAAGTGGTATTCTTGTTGTTATGCCGCCTCGTCGGGAACCACGTCGCTCTGATGAGCCTAGTTTCCCTGATCTTACTCAGTTGGGGGAAGTGATTGCTACAGCCCTTCAAACAGTGATGCGCCCTCCCCAGAGGACTCATCTGGAGACTATGTATAATTTGAAGTTGGATAAGTTTAAAGGTAGTGAGGGTCATGAAGGCGCAGAACGTTGGTTGGAACACATAGAGAAGACTTTTCGTGTGTTGCATAACCAGGGGAACCTTCCTATGGAGAGGTGGGTTGAGACAACCTCTTGGTTTCTGGAGATGGAGTCTGCAGCTTGGTGGGAGCAAGAACTTCGTAGGTTGACTCCAGCTCAGAGGACCGATTGGAATGTTTTCAAGGATGTGTTCCAGAGGAGATTTGTACCCCCTAAGTATATTGACCGTAAGAAACAGGAATTTACTGAGTTGAAACAGCGAAAGATGACGGCTAACGAGTATTATCGTAAGTTCACTGATTTGTCTCGTTACTATCCTGATGTCGCTGGTAATCCGGCGGAGATGCTTCGTCGTTTTCGCTTGGGCACTAGGAAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

207

Amino Acids

24.72

Weight (kDa)

9.63

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 578
AclI AACGTT 1 cut(s) 247
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 4 cut(s) 149, 202, 421, 493
AjiI CACGTC 1 cut(s) 83
AjnI CCWGG 2 cut(s) 36, 291
AluBI AGCT 2 cut(s) 359, 395
AluI AGCT 2 cut(s) 359, 395
Alw26I GTCTC 3 cut(s) 179, 317, 549
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 2 cut(s) 162, 242
AspS9I GGNCC 1 cut(s) 402
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 368
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 525
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BciT130I CCWGG 2 cut(s) 38, 293
BcoDI GTCTC 3 cut(s) 179, 317, 549
BfaI CTAG 2 cut(s) 99, 609
BfmI CTRYAG 2 cut(s) 138, 354
BisI GCNGC 2 cut(s) 65, 357
BlsI GCNGC 2 cut(s) 66, 358
Bme1390I CCNGG 2 cut(s) 38, 293
Bme18I GGWCC 1 cut(s) 402
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 2 cut(s) 78, 299
BmrFI CCNGG 2 cut(s) 38, 293
BmsI GCATC 2 cut(s) 147, 573
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 3 cut(s) 203, 362, 375
BsaJI CCNNGG 1 cut(s) 292
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 335, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseBI CCWGG 2 cut(s) 38, 293
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 3 cut(s) 131, 410, 477
BseRI GAGGAG 1 cut(s) 451
BseSI GKGCMC 1 cut(s) 608
BseXI GCAGC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 575
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 3 cut(s) 179, 317, 549
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 2 cut(s) 65, 578
BspCNI CTCAG 3 cut(s) 130, 409, 478
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 78, 299
BspMAI CTGCAG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 38, 293
Bst4CI ACNGT 2 cut(s) 154, 467
Bst6I CTCTTC 1 cut(s) 608
BstDEI CTNAG 4 cut(s) 117, 396, 453, 486
BstF5I GGATG 1 cut(s) 430
BstHHI GCGC 2 cut(s) 162, 242
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 3 cut(s) 179, 317, 549
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 2 cut(s) 38, 293
BstSCI CCNGG 2 cut(s) 36, 291
BstSFI CTRYAG 2 cut(s) 138, 354
BstSLI GKGCMC 1 cut(s) 608
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 275
BstXI CCANNNNNNTGG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 159, 534
CciI TCATGA 1 cut(s) 232
CfoI GCGC 2 cut(s) 162, 242
Cfr13I GGNCC 1 cut(s) 402
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 446
CviAII CATG 1 cut(s) 233
CviJI RGCY 5 cut(s) 97, 143, 359, 395, 512
CviKI_1 RGCY 5 cut(s) 97, 143, 359, 395, 512
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 4 cut(s) 117, 396, 453, 486
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
EciI GGCGGA 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 36, 291
FaeI CATG 1 cut(s) 236
FaiI YATR 8 cut(s) 62, 191, 195, 234, 263, 288, 308, 459
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 65, 357
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 2 cut(s) 65, 357
FspBI CTAG 2 cut(s) 99, 609
GlaI GCGC 2 cut(s) 161, 241
GluI GCNGC 2 cut(s) 65, 357
GsuI CTGGAG 3 cut(s) 203, 362, 375
HapII CCGG 1 cut(s) 575
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 162, 242
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 2 cut(s) 160, 240
HinP1I GCGC 2 cut(s) 160, 240
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 3 cut(s) 175, 350, 388
HpaII CCGG 1 cut(s) 575
Hpy166II GTNNAC 3 cut(s) 20, 387, 534
Hpy188I TCNGA 2 cut(s) 91, 399
Hpy188III TCNNGA 6 cut(s) 74, 182, 233, 341, 433, 557
Hpy8I GTNNAC 3 cut(s) 20, 387, 534
Hpy99I CGWCG 3 cut(s) 75, 87, 594
HpyAV CCTTC 3 cut(s) 155, 230, 311
HpyCH4III ACNGT 2 cut(s) 154, 467
HpyCH4IV ACGT 2 cut(s) 82, 247
HpyCH4V TGCA 2 cut(s) 286, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 4 cut(s) 117, 396, 453, 486
HpySE526I ACGT 2 cut(s) 82, 247
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 2 cut(s) 160, 240
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 2 cut(s) 147, 573
MaeI CTAG 2 cut(s) 99, 609
MaeII ACGT 2 cut(s) 82, 247
MaeIII GTNAC 1 cut(s) 548
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 2 cut(s) 196, 479
MlyI GAGTC 3 cut(s) 169, 359, 382
MmeI TCCRAC 2 cut(s) 186, 234
MnlI CCTC 8 cut(s) 78, 165, 174, 220, 306, 340, 393, 429
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 1 cut(s) 216
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 2 cut(s) 38, 293
MvaI CCWGG 2 cut(s) 38, 293
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 78, 299
PagI TCATGA 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 66, 358
PleI GAGTC 3 cut(s) 169, 358, 382
PpsI GAGTC 3 cut(s) 169, 358, 382
Psp1406I AACGTT 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 36, 291
PspGI CCWGG 2 cut(s) 36, 291
PspN4I GGNNCC 2 cut(s) 78, 299
PspPI GGNCC 1 cut(s) 402
PstI CTGCAG 1 cut(s) 358
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 65, 357
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 3 cut(s) 169, 359, 382
ScrFI CCNGG 2 cut(s) 38, 293
SduI GDGCHC 1 cut(s) 608
SfaNI GCATC 2 cut(s) 147, 573
SfcI CTRYAG 2 cut(s) 138, 354
SinI GGWCC 1 cut(s) 402
Sse9I AATT 2 cut(s) 196, 479
SsiI CCGC 2 cut(s) 65, 578
SspMI CTAG 2 cut(s) 99, 609
StyD4I CCNGG 2 cut(s) 36, 291
TaaI ACNGT 2 cut(s) 154, 467
TaiI ACGT 2 cut(s) 85, 250
TaqII GACCGA 1 cut(s) 419
TasI AATT 2 cut(s) 196, 479
TauI GCSGC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 159, 541
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 2 cut(s) 159, 541
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 99, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.