transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1228 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 431, 824 |
| AccI | GTMKAC | 1 cut(s) | 1150 |
| AciI | CCGC | 1 cut(s) | 561 |
| AcsI | RAATTY | 8 cut(s) | 65, 113, 127, 269, 650, 659, 916, 1220 |
| AfaI | GTAC | 3 cut(s) | 97, 218, 228 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 431, 824 |
| AflII | CTTAAG | 1 cut(s) | 704 |
| AflIII | ACRYGT | 1 cut(s) | 942 |
| AgsI | TTSAA | 8 cut(s) | 20, 112, 137, 167, 402, 532, 712, 956 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 37 |
| AjnI | CCWGG | 2 cut(s) | 828, 1041 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 684, 716, 958, 990 |
| AleI | CACNNNNGTG | 1 cut(s) | 360 |
| AluBI | AGCT | 6 cut(s) | 192, 319, 489, 558, 715, 1126 |
| AluI | AGCT | 6 cut(s) | 192, 319, 489, 558, 715, 1126 |
| Alw21I | GWGCWC | 1 cut(s) | 560 |
| Alw26I | GTCTC | 3 cut(s) | 176, 482, 830 |
| Ama87I | CYCGRG | 1 cut(s) | 377 |
| AoxI | GGCC | 2 cut(s) | 334, 826 |
| ApaI | GGGCCC | 1 cut(s) | 338 |
| ApeKI | GCWGC | 1 cut(s) | 435 |
| ApoI | RAATTY | 8 cut(s) | 65, 113, 127, 269, 650, 659, 916, 1220 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 15 |
| AspS9I | GGNCC | 3 cut(s) | 334, 335, 739 |
| AsuC2I | CCSGG | 1 cut(s) | 1159 |
| AsuHPI | GGTGA | 5 cut(s) | 320, 404, 436, 994, 1027 |
| AvaI | CYCGRG | 1 cut(s) | 377 |
| AvaII | GGWCC | 1 cut(s) | 739 |
| AxyI | CCTNAGG | 1 cut(s) | 743 |
| BaeGI | GKGCMC | 1 cut(s) | 338 |
| BanII | GRGCYC | 2 cut(s) | 338, 560 |
| Bbv12I | GWGCWC | 1 cut(s) | 560 |
| BbvCI | CCTCAGC | 1 cut(s) | 485 |
| BbvI | GCAGC | 1 cut(s) | 422 |
| BccI | CCATC | 5 cut(s) | 217, 248, 752, 887, 1083 |
| BceAI | ACGGC | 1 cut(s) | 1074 |
| BciT130I | CCWGG | 2 cut(s) | 830, 1043 |
| BclI | TGATCA | 1 cut(s) | 1135 |
| BcnI | CCSGG | 1 cut(s) | 1159 |
| BcoDI | GTCTC | 3 cut(s) | 176, 482, 830 |
| BfaI | CTAG | 3 cut(s) | 500, 1055, 1145 |
| BfrI | CTTAAG | 1 cut(s) | 704 |
| BisI | GCNGC | 1 cut(s) | 436 |
| BlsI | GCNGC | 1 cut(s) | 437 |
| BmcAI | AGTACT | 1 cut(s) | 218 |
| Bme1390I | CCNGG | 3 cut(s) | 830, 1043, 1159 |
| Bme18I | GGWCC | 1 cut(s) | 739 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 37 |
| BmeT110I | CYCGRG | 1 cut(s) | 377 |
| BmgT120I | GGNCC | 3 cut(s) | 334, 335, 739 |
| BmiI | GGNNCC | 2 cut(s) | 335, 336 |
| BmrFI | CCNGG | 3 cut(s) | 830, 1043, 1159 |
| Bpu10I | CCTNAGC | 1 cut(s) | 485 |
| BpuMI | CCSGG | 1 cut(s) | 1159 |
| BsaJI | CCNNGG | 2 cut(s) | 1041, 1111 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 332, 362, 446, 476 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 431, 824 |
| Bse21I | CCTNAGG | 1 cut(s) | 743 |
| BseBI | CCWGG | 2 cut(s) | 830, 1043 |
| BseDI | CCNNGG | 2 cut(s) | 1041, 1111 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 431, 824 |
| BseMII | CTCAG | 2 cut(s) | 499, 734 |
| BseSI | GKGCMC | 1 cut(s) | 338 |
| BseXI | GCAGC | 1 cut(s) | 422 |
| BshFI | GGCC | 2 cut(s) | 336, 828 |
| BsiHKAI | GWGCWC | 1 cut(s) | 560 |
| BsiHKCI | CYCGRG | 1 cut(s) | 377 |
| BsiSI | CCGG | 2 cut(s) | 551, 1158 |
| BslFI | GGGAC | 3 cut(s) | 135, 630, 936 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 431, 824 |
| BsmAI | GTCTC | 3 cut(s) | 176, 482, 830 |
| BsmBI | CGTCTC | 1 cut(s) | 176 |
| BsmFI | GGGAC | 3 cut(s) | 135, 630, 936 |
| BsnI | GGCC | 2 cut(s) | 336, 828 |
| BsoBI | CYCGRG | 1 cut(s) | 377 |
| Bsp120I | GGGCCC | 1 cut(s) | 334 |
| Bsp1286I | GDGCHC | 2 cut(s) | 338, 560 |
| Bsp1407I | TGTACA | 1 cut(s) | 95 |
| Bsp143I | GATC | 2 cut(s) | 1002, 1135 |
| BspACI | CCGC | 1 cut(s) | 561 |
| BspANI | GGCC | 2 cut(s) | 336, 828 |
| BspCNI | CTCAG | 2 cut(s) | 498, 735 |
| BspLI | GGNNCC | 2 cut(s) | 335, 336 |
| BspTI | CTTAAG | 1 cut(s) | 704 |
| BsrGI | TGTACA | 1 cut(s) | 95 |
| BssECI | CCNNGG | 2 cut(s) | 1041, 1111 |
| BssMI | GATC | 2 cut(s) | 1002, 1135 |
| Bst2UI | CCWGG | 2 cut(s) | 830, 1043 |
| Bst4CI | ACNGT | 3 cut(s) | 205, 539, 1115 |
| Bst6I | CTCTTC | 3 cut(s) | 138, 179, 705 |
| BstAFI | CTTAAG | 1 cut(s) | 704 |
| BstAUI | TGTACA | 1 cut(s) | 95 |
| BstC8I | GCNNGC | 2 cut(s) | 556, 565 |
| BstDEI | CTNAG | 2 cut(s) | 485, 743 |
| BstDSI | CCRYGG | 1 cut(s) | 1111 |
| BstKTI | GATC | 2 cut(s) | 1005, 1138 |
| BstMAI | GTCTC | 3 cut(s) | 176, 482, 830 |
| BstMBI | GATC | 2 cut(s) | 1002, 1135 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 256, 560, 564 |
| BstNI | CCWGG | 2 cut(s) | 830, 1043 |
| BstSCI | CCNGG | 3 cut(s) | 828, 1041, 1157 |
| BstSLI | GKGCMC | 1 cut(s) | 338 |
| BstV1I | GCAGC | 1 cut(s) | 422 |
| Bsu36I | CCTNAGG | 1 cut(s) | 743 |
| BsuRI | GGCC | 2 cut(s) | 336, 828 |
| BtgI | CCRYGG | 1 cut(s) | 1111 |
| BtgZI | GCGATG | 1 cut(s) | 771 |
| BtsIMutI | CAGTG | 1 cut(s) | 535 |
| Cac8I | GCNNGC | 2 cut(s) | 556, 565 |
| Cfr13I | GGNCC | 3 cut(s) | 334, 335, 739 |
| CseI | GACGC | 2 cut(s) | 190, 1036 |
| Csp6I | GTAC | 3 cut(s) | 96, 217, 227 |
| CviAII | CATG | 1 cut(s) | 274 |
| CviQI | GTAC | 3 cut(s) | 96, 217, 227 |
| DdeI | CTNAG | 2 cut(s) | 485, 743 |
| DpnI | GATC | 2 cut(s) | 1004, 1137 |
| DpnII | GATC | 2 cut(s) | 1002, 1135 |
| DraI | TTTAAA | 3 cut(s) | 657, 850, 1218 |
| DriI | GACNNNNNGTC | 1 cut(s) | 37 |
| Eam1104I | CTCTTC | 3 cut(s) | 138, 179, 705 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 37 |
| EarI | CTCTTC | 3 cut(s) | 138, 179, 705 |
| EciI | GGCGGA | 1 cut(s) | 550 |
| Ecl136II | GAGCTC | 1 cut(s) | 558 |
| Eco24I | GRGCYC | 2 cut(s) | 338, 560 |
| Eco47I | GGWCC | 1 cut(s) | 739 |
| Eco53kI | GAGCTC | 1 cut(s) | 558 |
| Eco81I | CCTNAGG | 1 cut(s) | 743 |
| Eco88I | CYCGRG | 1 cut(s) | 377 |
| EcoICRI | GAGCTC | 1 cut(s) | 558 |
| EcoO109I | RGGNCCY | 2 cut(s) | 334, 739 |
| EcoRII | CCWGG | 2 cut(s) | 828, 1041 |
| EcoT38I | GRGCYC | 2 cut(s) | 338, 560 |
| Esp3I | CGTCTC | 1 cut(s) | 176 |
| FaeI | CATG | 1 cut(s) | 277 |
| FaqI | GGGAC | 3 cut(s) | 135, 630, 936 |
| FatI | CATG | 1 cut(s) | 273 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| FbaI | TGATCA | 1 cut(s) | 1135 |
| FblI | GTMKAC | 1 cut(s) | 1150 |
| Fnu4HI | GCNGC | 1 cut(s) | 436 |
| FriOI | GRGCYC | 2 cut(s) | 338, 560 |
| Fsp4HI | GCNGC | 1 cut(s) | 436 |
| FspBI | CTAG | 3 cut(s) | 500, 1055, 1145 |
| GluI | GCNGC | 1 cut(s) | 436 |
| HaeIII | GGCC | 2 cut(s) | 336, 828 |
| HapII | CCGG | 2 cut(s) | 551, 1158 |
| HgaI | GACGC | 2 cut(s) | 190, 1036 |
| Hin1II | CATG | 1 cut(s) | 277 |
| HincII | GTYRAC | 3 cut(s) | 156, 384, 802 |
| HindII | GTYRAC | 3 cut(s) | 156, 384, 802 |
| HindIII | AAGCTT | 1 cut(s) | 1124 |
| HinfI | GANTC | 6 cut(s) | 11, 598, 667, 697, 718, 1141 |
| HpaII | CCGG | 2 cut(s) | 551, 1158 |
| HphI | GGTGA | 5 cut(s) | 320, 404, 436, 994, 1027 |
| Hpy166II | GTNNAC | 5 cut(s) | 156, 384, 802, 912, 1151 |
| Hpy188I | TCNGA | 5 cut(s) | 864, 1002, 1065, 1098, 1140 |
| Hpy188III | TCNNGA | 3 cut(s) | 178, 211, 281 |
| Hpy8I | GTNNAC | 5 cut(s) | 156, 384, 802, 912, 1151 |
| Hpy99I | CGWCG | 1 cut(s) | 35 |
| HpyAV | CCTTC | 3 cut(s) | 362, 515, 730 |
| HpyCH4III | ACNGT | 3 cut(s) | 205, 539, 1115 |
| HpyCH4IV | ACGT | 3 cut(s) | 169, 781, 942 |
| HpyCH4V | TGCA | 4 cut(s) | 55, 297, 515, 795 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 256, 560, 564 |
| HpyF3I | CTNAG | 2 cut(s) | 485, 743 |
| HpySE526I | ACGT | 3 cut(s) | 169, 781, 942 |
| Hsp92II | CATG | 1 cut(s) | 277 |
| Ksp22I | TGATCA | 1 cut(s) | 1135 |
| Kzo9I | GATC | 2 cut(s) | 1002, 1135 |
| LmnI | GCTCC | 3 cut(s) | 247, 563, 748 |
| Lsp1109I | GCAGC | 1 cut(s) | 422 |
| MaeI | CTAG | 3 cut(s) | 500, 1055, 1145 |
| MaeII | ACGT | 3 cut(s) | 169, 781, 942 |
| MaeIII | GTNAC | 6 cut(s) | 178, 308, 599, 634, 931, 1173 |
| MalI | GATC | 2 cut(s) | 1004, 1137 |
| MboI | GATC | 2 cut(s) | 1002, 1135 |
| MboII | GAAGA | 5 cut(s) | 155, 166, 534, 692, 802 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MhlI | GDGCHC | 2 cut(s) | 338, 560 |
| MlyI | GAGTC | 3 cut(s) | 607, 691, 1150 |
| MmeI | TCCRAC | 3 cut(s) | 489, 989, 1121 |
| MroXI | GAANNNNTTC | 1 cut(s) | 15 |
| MseI | TTAA | 8 cut(s) | 83, 656, 705, 764, 849, 1050, 1197, 1217 |
| MslI | CAYNNNNRTG | 1 cut(s) | 360 |
| MspCI | CTTAAG | 1 cut(s) | 704 |
| MspI | CCGG | 2 cut(s) | 551, 1158 |
| MspR9I | CCNGG | 3 cut(s) | 830, 1043, 1159 |
| MunI | CAATTG | 1 cut(s) | 25 |
| MvaI | CCWGG | 2 cut(s) | 830, 1043 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 256, 560, 564 |
| NciI | CCSGG | 1 cut(s) | 1159 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NdeII | GATC | 2 cut(s) | 1002, 1135 |
| NlaIII | CATG | 1 cut(s) | 277 |
| NlaIV | GGNNCC | 2 cut(s) | 335, 336 |
| NmuCI | GTSAC | 6 cut(s) | 178, 308, 599, 634, 931, 1173 |
| OliI | CACNNNNGTG | 1 cut(s) | 360 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 218 |
| PdmI | GAANNNNTTC | 1 cut(s) | 15 |
| PfeI | GAWTC | 3 cut(s) | 11, 667, 718 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 431, 824 |
| PkrI | GCNGC | 1 cut(s) | 437 |
| PleI | GAGTC | 3 cut(s) | 606, 691, 1149 |
| PpsI | GAGTC | 3 cut(s) | 606, 691, 1149 |
| PpuMI | RGGWCCY | 1 cut(s) | 739 |
| PsiI | TTATAA | 1 cut(s) | 1228 |
| Psp124BI | GAGCTC | 1 cut(s) | 560 |
| Psp5II | RGGWCCY | 1 cut(s) | 739 |
| Psp6I | CCWGG | 2 cut(s) | 828, 1041 |
| PspGI | CCWGG | 2 cut(s) | 828, 1041 |
| PspN4I | GGNNCC | 2 cut(s) | 335, 336 |
| PspOMI | GGGCCC | 1 cut(s) | 334 |
| PspPI | GGNCC | 3 cut(s) | 334, 335, 739 |
| PspPPI | RGGWCCY | 1 cut(s) | 739 |
| RsaI | GTAC | 3 cut(s) | 97, 218, 228 |
| RsaNI | GTAC | 3 cut(s) | 96, 217, 227 |
| RseI | CAYNNNNRTG | 1 cut(s) | 360 |
| SacI | GAGCTC | 1 cut(s) | 560 |
| SaqAI | TTAA | 8 cut(s) | 83, 656, 705, 764, 849, 1050, 1197, 1217 |
| SatI | GCNGC | 1 cut(s) | 436 |
| Sau3AI | GATC | 2 cut(s) | 1002, 1135 |
| Sau96I | GGNCC | 3 cut(s) | 334, 335, 739 |
| ScaI | AGTACT | 1 cut(s) | 218 |
| SchI | GAGTC | 3 cut(s) | 607, 691, 1150 |
| ScrFI | CCNGG | 3 cut(s) | 830, 1043, 1159 |
| SduI | GDGCHC | 2 cut(s) | 338, 560 |
| SinI | GGWCC | 1 cut(s) | 739 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 360 |
| SmlI | CTYRAG | 1 cut(s) | 704 |
| SmoI | CTYRAG | 1 cut(s) | 704 |
| SsiI | CCGC | 1 cut(s) | 561 |
| SspI | AATATT | 1 cut(s) | 1210 |
| SspMI | CTAG | 3 cut(s) | 500, 1055, 1145 |
| SstI | GAGCTC | 1 cut(s) | 560 |
| StyD4I | CCNGG | 3 cut(s) | 828, 1041, 1157 |
| TaaI | ACNGT | 3 cut(s) | 205, 539, 1115 |
| TaiI | ACGT | 3 cut(s) | 172, 784, 945 |
| TaqI | TCGA | 3 cut(s) | 212, 221, 1085 |
| TatI | WGTACW | 2 cut(s) | 95, 216 |
| TfiI | GAWTC | 3 cut(s) | 11, 667, 718 |
| Tru1I | TTAA | 8 cut(s) | 83, 656, 705, 764, 849, 1050, 1197, 1217 |
| Tru9I | TTAA | 8 cut(s) | 83, 656, 705, 764, 849, 1050, 1197, 1217 |
| TscAI | CASTG | 1 cut(s) | 542 |
| TseFI | GTSAC | 6 cut(s) | 178, 308, 599, 634, 931, 1173 |
| TseI | GCWGC | 1 cut(s) | 435 |
| Tsp45I | GTSAC | 6 cut(s) | 178, 308, 599, 634, 931, 1173 |
| TspDTI | ATGAA | 4 cut(s) | 17, 262, 292, 749 |
| TspGWI | ACGGA | 3 cut(s) | 48, 260, 671 |
| TspRI | CASTG | 1 cut(s) | 542 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 431, 824 |
| Vha464I | CTTAAG | 1 cut(s) | 704 |
| VpaK11BI | GGWCC | 1 cut(s) | 739 |
| XapI | RAATTY | 8 cut(s) | 65, 113, 127, 269, 650, 659, 916, 1220 |
| XmiI | GTMKAC | 1 cut(s) | 1150 |
| XmnI | GAANNNNTTC | 1 cut(s) | 15 |
| XspI | CTAG | 3 cut(s) | 500, 1055, 1145 |
| ZrmI | AGTACT | 1 cut(s) | 218 |