FvH4_4g06575

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000370
Physical Location & Seq
Reverse (-)
5842634 .. 5845088
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06575.t1

Sequence Viewer

Length: 1959 bp
ATGGAGGAATCTGGGAGTCACAGTAATGTGGAGATCGGAAACAACTTTGGAATAATTGCAGCCATTCAAGATATGGCTAATGCAATTCGAAATAACCATGGAGGAGCTCCACCTGAGAATGCTGAAGATAGAGTTCTAAGGATCCAAGGTGAGTTTCGCAAGTCAAAGCCACCTGTGTTCAAGGGGAGCACCGATCCAATGATTGCTGAAGAATGGGTCCGTCAGATGAAAAGAAGTTTGACGAACAAGAGGATTCCTGAAGATTTACAAGTGACTGTTGCTTGTACCTATCTGGAAGGTCAGGCATACCGTTGGTGGGAGTCCGTACTTTGTATTCCAAATACGGTGATTGCAACATGGGCTGAATTCGAGAGAGTTTTTCTTGAGAAATACTTTCCTTCCACTCAGCGTCGTCTGAAGTCAAGGGAATTCTCCACTCTTCAACAAATGAATATGCCGGTTGGAGATTATCAGGCTAAATTTGAGGAATTAATGCGTTTTGCCCCTGAGCTTATCCCAGATGATAATGCTAAAGCAAGGCGTTTTGAAGAAGGGCTGCGACCTCAAATCAAGGAGAAGGTAATGATGCTCAAGCTGGATAGGTATACTGACGTAGTAGAACGTGCGCTTATGGCTGAACAGATGATGCAAGAATCAAAAGCTGTGTTTGAGGCTAGTCGGGCACCCCAGGCCCCACAACCATCATATCGTACCCCAATTACCCAATACCCTACTGCCCGACCCCAATCTTATGCACCACCACAGCCTTATCTTGCCCCTGTCCCGGCACAACAGAATTGGGTTAGACCACAGATCCGACAACCGGCACCCCGTCCTGCTGATCAATCAACTGCAGCTAGACCCCAAGCTGGAGCAAAAAGCCAGGGTCATCCAGCTCAAGGCCAAGTTTATGCTGTGGGTTATGGTGAGGAGGAATTCGAGGGCAATGAAGCTGAAGCAGTTGAGCAATTCCAAGGAGAAGAAGTCGAGATGGGGAGTTTGAATAACATGGAGGATCCTTATGATCATACTGTTGTGGAAGGGTACGAGTCGTTACCACGTCCGTTGGTAATAGGGTCTCCTATAGGTCGTAGTATGAGAGTTAGTAAGGTGTCTAGATCCTATTGGCTTTCTCATTACAAGGCTCTCTTTGATTGTGAGAAGAAGACAGTGACATTAACAACAAAGGAAGGAGAAATTATTACCTTTATTGGGGATCAAGGACTGAGAAATCCTCAGTTGGCCTTTGATAAGAAAGGTATTAATTACTCAATGATGATTGCCAACTTGGCTTTGGCAGAGACGAAGGATGTAGACATTGAGCCAATTCCAGTTGTGAATCAGTTCAAAGATGTCTTTCCGGAGGATTTGTTCAAGTTGCCTCCAGAACGTGAAGTTGAATTTGCTATCGAAGTTTTCCCTGGTACAACACCAATTTCCATTCCTCCTTATCGTATGGCTCCAAAGGAATTAGAAGAACTTAAAGCTCAAATTGATGAACTACGGAGCAAAGGATTCATTCGCCCTAGCGTATCACCTTGGGGTGCGCCGGCTTTGTTTGTGAAGAAGAAAGATGGATCACTTCGTATGTGTATCGATTATCGGAAATTGAATAGGGTTACTGTGAAGAATAAGTATCCACTTCCGAGGATTGATGATCTATTCGACCAATTAGGAGGTTGTGAGTTCTTTTCCAAGATTGATCTACGGTCGGGTTATCATCAACTACGAGTCAAGAAGGAGGATATCCAGAAGACGGCATTCAAATCCCGGTATGGGCAATATGAATTTCTCGTTATGCCTTTCGGTTTGACGAATGCGCCGGCAGTGTTTATGGATTTGATGAATCGTGTTTTCCGGCCGTATTTGGACAAGTTTGTGATCGTGTTTATTGATGATATTCTCATCTACTCCAAATCAAAGGCTGAGCACGAGCAACACTTATCCATTGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

653

Amino Acids

74.53

Weight (kDa)

6.21

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 53 - 214 3e-10 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 94 - 188 1.6e-17 Retrotransposon gag protein
RVT_1 PF00078 521 - 651 8.7e-32 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 682, 826
AccI GTMKAC 2 cut(s) 605, 1314
AccIII TCCGGA 1 cut(s) 1360
AclWI GGATC 9 cut(s) 136, 149, 188, 808, 1010, 1023, 1113, 1224, 1585
AcoI YGGCCR 1 cut(s) 1859
AcsI RAATTY 6 cut(s) 365, 428, 479, 935, 1400, 1787
AcuI CTGAAG 5 cut(s) 144, 228, 279, 437, 975
AfaI GTAC 5 cut(s) 286, 327, 712, 1046, 1426
AfiI CCNNNNNNNGG 8 cut(s) 316, 784, 823, 869, 899, 1212, 1756, 1776
AjiI CACGTC 1 cut(s) 1061
AjnI CCWGG 3 cut(s) 687, 882, 1420
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AloI GAACNNNNNNTCC 2 cut(s) 1355, 1387
AluBI AGCT 9 cut(s) 107, 511, 595, 662, 857, 869, 896, 953, 1487
AluI AGCT 9 cut(s) 107, 511, 595, 662, 857, 869, 896, 953, 1487
Alw21I GWGCWC 3 cut(s) 109, 191, 1932
Alw26I GTCTC 2 cut(s) 1083, 1295
AlwI GGATC 9 cut(s) 136, 149, 188, 808, 1010, 1023, 1113, 1224, 1585
Aor13HI TCCGGA 1 cut(s) 1360
AoxI GGCC 4 cut(s) 690, 901, 1242, 1859
ApeKI GCWGC 3 cut(s) 59, 556, 854
ApoI RAATTY 6 cut(s) 365, 428, 479, 935, 1400, 1787
AseI ATTAAT 2 cut(s) 491, 1263
Asp700I GAANNNNTTC 1 cut(s) 1343
AspLEI GCGC 3 cut(s) 628, 1549, 1822
AspS9I GGNCC 2 cut(s) 217, 691
AsuC2I CCSGG 2 cut(s) 785, 1771
AsuHPI GGTGA 4 cut(s) 161, 358, 938, 1527
AsuII TTCGAA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 685
BamHI GGATCC 2 cut(s) 141, 1015
BanI GGYRCC 2 cut(s) 682, 826
BanII GRGCYC 1 cut(s) 109
BauI CACGAG 1 cut(s) 1931
BbsI GAAGAC 2 cut(s) 1172, 1760
Bbv12I GWGCWC 3 cut(s) 109, 191, 1932
BbvI GCAGC 3 cut(s) 71, 543, 866
BccI CCATC 3 cut(s) 709, 985, 1568
BceAI ACGGC 2 cut(s) 1773, 1846
BciT130I CCWGG 3 cut(s) 689, 884, 1422
BciVI GTATCC 1 cut(s) 1647
BclI TGATCA 2 cut(s) 841, 1024
BcnI CCSGG 2 cut(s) 785, 1771
BcoDI GTCTC 2 cut(s) 1083, 1295
BfaI CTAG 4 cut(s) 675, 858, 1116, 1527
BfmI CTRYAG 2 cut(s) 852, 1083
BfuI GTATCC 1 cut(s) 1647
BglI GCCNNNNNGGC 1 cut(s) 1289
BisI GCNGC 3 cut(s) 60, 557, 855
BlpI GCTNAGC 1 cut(s) 1926
BlsI GCNGC 3 cut(s) 61, 558, 856
Bme1390I CCNGG 5 cut(s) 689, 785, 884, 1422, 1771
Bme18I GGWCC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 1061
BmgT120I GGNCC 2 cut(s) 217, 691
BmiI GGNNCC 7 cut(s) 143, 218, 684, 693, 828, 1017, 1461
BmrFI CCNGG 5 cut(s) 689, 785, 884, 1422, 1771
BmsI GCATC 2 cut(s) 576, 636
BpiI GAAGAC 2 cut(s) 1172, 1760
BplI GAGNNNNNCTC 2 cut(s) 1219, 1251
BpmI CTGGAG 2 cut(s) 891, 1368
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 1926
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 3 cut(s) 404, 575, 882
BpuMI CCSGG 2 cut(s) 785, 1771
Bsa29I ATCGAT 1 cut(s) 1596
BsaI GGTCTC 1 cut(s) 1083
BsaJI CCNNGG 8 cut(s) 97, 145, 687, 883, 973, 1420, 1538, 1646
BsaWI WCCGGW 1 cut(s) 1360
BsaXI ACNNNNNCTCC 6 cut(s) 7, 37, 969, 999, 1355, 1385
Bsc4I CCNNNNNNNGG 8 cut(s) 316, 784, 823, 869, 899, 1212, 1756, 1776
Bse118I RCCGGY 4 cut(s) 457, 823, 1549, 1822
Bse1I ACTGG 1 cut(s) 1331
Bse3DI GCAATG 1 cut(s) 952
BseAI TCCGGA 1 cut(s) 1360
BseBI CCWGG 3 cut(s) 689, 884, 1422
BseCI ATCGAT 1 cut(s) 1596
BseDI CCNNGG 8 cut(s) 97, 145, 687, 883, 973, 1420, 1538, 1646
BseGI GGATG 2 cut(s) 889, 1315
BseLI CCNNNNNNNGG 8 cut(s) 316, 784, 823, 869, 899, 1212, 1756, 1776
BseMI GCAATG 1 cut(s) 952
BseMII CTCAG 6 cut(s) 105, 419, 498, 1217, 1250, 1917
BseNI ACTGG 1 cut(s) 1331
BseRI GAGGAG 2 cut(s) 117, 944
BseSI GKGCMC 1 cut(s) 685
BseX3I CGGCCG 1 cut(s) 1859
BseXI GCAGC 3 cut(s) 71, 543, 866
Bsh1285I CGRYCG 2 cut(s) 1712, 1862
BshFI GGCC 4 cut(s) 692, 903, 1244, 1861
BshNI GGYRCC 2 cut(s) 682, 826
BshVI ATCGAT 1 cut(s) 1596
BsiEI CGRYCG 2 cut(s) 1712, 1862
BsiHKAI GWGCWC 3 cut(s) 109, 191, 1932
BsiSI CCGG 8 cut(s) 458, 785, 824, 1361, 1550, 1771, 1823, 1858
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 8 cut(s) 316, 784, 823, 869, 899, 1212, 1756, 1776
BsmAI GTCTC 2 cut(s) 1083, 1295
BsmBI CGTCTC 1 cut(s) 1295
BsmFI GGGAC 1 cut(s) 767
BsmI GAATGC 3 cut(s) 124, 1760, 1822
BsnI GGCC 4 cut(s) 692, 903, 1244, 1861
Bso31I GGTCTC 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 4 cut(s) 109, 191, 685, 1932
Bsp13I TCCGGA 1 cut(s) 1360
Bsp1720I GCTNAGC 1 cut(s) 1926
Bsp19I CCATGG 1 cut(s) 97
BspANI GGCC 4 cut(s) 692, 903, 1244, 1861
BspCNI CTCAG 6 cut(s) 106, 418, 499, 1218, 1249, 1918
BspDI ATCGAT 1 cut(s) 1596
BspEI TCCGGA 1 cut(s) 1360
BspLI GGNNCC 7 cut(s) 143, 218, 684, 693, 828, 1017, 1461
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 9 cut(s) 136, 149, 188, 808, 1010, 1023, 1113, 1224, 1585
BspT104I TTCGAA 1 cut(s) 88
BspT107I GGYRCC 2 cut(s) 682, 826
BspTNI GGTCTC 1 cut(s) 1083
BsrDI GCAATG 1 cut(s) 952
BsrFI RCCGGY 4 cut(s) 457, 823, 1549, 1822
BsrI ACTGG 1 cut(s) 1331
BssAI RCCGGY 4 cut(s) 457, 823, 1549, 1822
BssECI CCNNGG 8 cut(s) 97, 145, 687, 883, 973, 1420, 1538, 1646
BssNAI GTATAC 1 cut(s) 606
BssSI CACGAG 1 cut(s) 1931
BssT1I CCWWGG 4 cut(s) 97, 145, 973, 1538
Bst1107I GTATAC 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 1931
Bst2UI CCWGG 3 cut(s) 689, 884, 1422
Bst4CI ACNGT 8 cut(s) 23, 277, 311, 346, 1033, 1171, 1624, 1710
Bst6I CTCTTC 1 cut(s) 444
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 1551, 1824
BstDEI CTNAG 7 cut(s) 114, 137, 405, 507, 1226, 1236, 1926
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 889, 1315
BstHHI GCGC 3 cut(s) 628, 1549, 1822
BstMAI GTCTC 2 cut(s) 1083, 1295
BstMCI CGRYCG 2 cut(s) 1712, 1862
BstMWI GCNNNNNNNGC 5 cut(s) 359, 632, 680, 689, 1289
BstNI CCWGG 3 cut(s) 689, 884, 1422
BstSCI CCNGG 5 cut(s) 687, 783, 882, 1420, 1769
BstSFI CTRYAG 2 cut(s) 852, 1083
BstSLI GKGCMC 1 cut(s) 685
BstV1I GCAGC 3 cut(s) 71, 543, 866
BstV2I GAAGAC 2 cut(s) 1172, 1760
BstX2I RGATCY 4 cut(s) 141, 813, 1015, 1118
BstYI RGATCY 4 cut(s) 141, 813, 1015, 1118
BstZ17I GTATAC 1 cut(s) 606
BstZI CGGCCG 1 cut(s) 1859
Bsu15I ATCGAT 1 cut(s) 1596
BsuI GTATCC 1 cut(s) 1647
BsuRI GGCC 4 cut(s) 692, 903, 1244, 1861
BsuTUI ATCGAT 1 cut(s) 1596
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 1061
BtsCI GGATG 2 cut(s) 889, 1315
BtsI GCAGTG 1 cut(s) 1833
BtsIMutI CAGTG 2 cut(s) 1176, 1833
Cac8I GCNNGC 2 cut(s) 1551, 1824
CfoI GCGC 3 cut(s) 628, 1549, 1822
Cfr10I RCCGGY 4 cut(s) 457, 823, 1549, 1822
Cfr13I GGNCC 2 cut(s) 217, 691
ClaI ATCGAT 1 cut(s) 1596
CseI GACGC 1 cut(s) 398
Csp6I GTAC 5 cut(s) 285, 326, 711, 1045, 1425
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 3 cut(s) 98, 357, 1009
CviQI GTAC 5 cut(s) 285, 326, 711, 1045, 1425
DdeI CTNAG 7 cut(s) 114, 137, 405, 507, 1226, 1236, 1926
EaeI YGGCCR 1 cut(s) 1859
EagI CGGCCG 1 cut(s) 1859
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Ecl136II GAGCTC 1 cut(s) 107
EclXI CGGCCG 1 cut(s) 1859
Eco130I CCWWGG 4 cut(s) 97, 145, 973, 1538
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 1083
Eco32I GATATC 1 cut(s) 1747
Eco47I GGWCC 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 1859
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 5 cut(s) 144, 228, 279, 437, 975
EcoICRI GAGCTC 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 691
EcoRI GAATTC 3 cut(s) 365, 428, 935
EcoRII CCWGG 3 cut(s) 687, 882, 1420
EcoRV GATATC 1 cut(s) 1747
EcoT14I CCWWGG 4 cut(s) 97, 145, 973, 1538
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 4 cut(s) 97, 145, 973, 1538
Esp3I CGTCTC 1 cut(s) 1295
FaeI CATG 3 cut(s) 101, 360, 1012
FalI AAGNNNNNCTT 2 cut(s) 1133, 1165
FaqI GGGAC 1 cut(s) 767
FatI CATG 3 cut(s) 97, 356, 1008
FbaI TGATCA 2 cut(s) 841, 1024
FblI GTMKAC 2 cut(s) 605, 1314
Fnu4HI GCNGC 3 cut(s) 60, 557, 855
FokI GGATG 2 cut(s) 876, 1322
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 60, 557, 855
FspBI CTAG 4 cut(s) 675, 858, 1116, 1527
GlaI GCGC 3 cut(s) 627, 1548, 1821
GluI GCNGC 3 cut(s) 60, 557, 855
GsuI CTGGAG 2 cut(s) 891, 1368
HaeIII GGCC 4 cut(s) 692, 903, 1244, 1861
HapII CCGG 8 cut(s) 458, 785, 824, 1361, 1550, 1771, 1823, 1858
HgaI GACGC 1 cut(s) 398
HhaI GCGC 3 cut(s) 628, 1549, 1822
Hin1II CATG 3 cut(s) 101, 360, 1012
Hin6I GCGC 3 cut(s) 626, 1547, 1820
HinP1I GCGC 3 cut(s) 626, 1547, 1820
HpaII CCGG 8 cut(s) 458, 785, 824, 1361, 1550, 1771, 1823, 1858
HphI GGTGA 4 cut(s) 161, 358, 938, 1527
Hpy166II GTNNAC 2 cut(s) 606, 1315
Hpy188I TCNGA 6 cut(s) 38, 225, 417, 818, 1605, 1647
Hpy8I GTNNAC 2 cut(s) 606, 1315
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 8 cut(s) 290, 408, 545, 571, 1034, 1184, 1300, 1732
HpyCH4III ACNGT 8 cut(s) 23, 277, 311, 346, 1033, 1171, 1624, 1710
HpyCH4IV ACGT 4 cut(s) 612, 622, 1060, 1390
HpyCH4V TGCA 6 cut(s) 59, 83, 353, 649, 755, 854
HpyF10VI GCNNNNNNNGC 5 cut(s) 359, 632, 680, 689, 1289
HpyF3I CTNAG 7 cut(s) 114, 137, 405, 507, 1226, 1236, 1926
HpySE526I ACGT 4 cut(s) 612, 622, 1060, 1390
Hsp92II CATG 3 cut(s) 101, 360, 1012
HspAI GCGC 3 cut(s) 626, 1547, 1820
Kpn2I TCCGGA 1 cut(s) 1360
KroI GCCGGC 2 cut(s) 1549, 1822
KroNI GCCGGC 2 cut(s) 1551, 1824
Ksp22I TGATCA 2 cut(s) 841, 1024
LmnI GCTCC 6 cut(s) 104, 112, 186, 872, 1465, 1506
Lsp1109I GCAGC 3 cut(s) 71, 543, 866
LweI GCATC 2 cut(s) 576, 636
MaeI CTAG 4 cut(s) 675, 858, 1116, 1527
MaeII ACGT 4 cut(s) 612, 622, 1060, 1390
MaeIII GTNAC 5 cut(s) 17, 271, 1053, 1171, 1618
MflI RGATCY 4 cut(s) 141, 813, 1015, 1118
MhlI GDGCHC 4 cut(s) 109, 191, 685, 1932
MlyI GAGTC 4 cut(s) 25, 329, 1058, 1740
MmeI TCCRAC 2 cut(s) 442, 841
MroI TCCGGA 1 cut(s) 1360
MroNI GCCGGC 2 cut(s) 1549, 1822
MroXI GAANNNNTTC 1 cut(s) 1343
MseI TTAA 4 cut(s) 491, 1178, 1263, 1482
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 8 cut(s) 458, 785, 824, 1361, 1550, 1771, 1823, 1858
MspR9I CCNGG 5 cut(s) 689, 785, 884, 1422, 1771
Mva1269I GAATGC 3 cut(s) 124, 1760, 1822
MvaI CCWGG 3 cut(s) 689, 884, 1422
MwoI GCNNNNNNNGC 5 cut(s) 359, 632, 680, 689, 1289
NaeI GCCGGC 2 cut(s) 1551, 1824
NciI CCSGG 2 cut(s) 785, 1771
NcoI CCATGG 1 cut(s) 97
NgoMIV GCCGGC 2 cut(s) 1549, 1822
NlaIII CATG 3 cut(s) 101, 360, 1012
NlaIV GGNNCC 7 cut(s) 143, 218, 684, 693, 828, 1017, 1461
NmuCI GTSAC 3 cut(s) 17, 271, 1171
NspV TTCGAA 1 cut(s) 88
PctI GAATGC 3 cut(s) 124, 1760, 1822
PdiI GCCGGC 2 cut(s) 1551, 1824
PdmI GAANNNNTTC 1 cut(s) 1343
PfeI GAWTC 6 cut(s) 8, 253, 653, 1339, 1515, 1846
PkrI GCNGC 3 cut(s) 61, 558, 856
PleI GAGTC 4 cut(s) 24, 328, 1057, 1739
PpsI GAGTC 4 cut(s) 24, 328, 1057, 1739
PshBI ATTAAT 2 cut(s) 491, 1263
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 3 cut(s) 687, 882, 1420
PspGI CCWGG 3 cut(s) 687, 882, 1420
PspN4I GGNNCC 7 cut(s) 143, 218, 684, 693, 828, 1017, 1461
PspPI GGNCC 2 cut(s) 217, 691
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 4 cut(s) 141, 813, 1015, 1118
RsaI GTAC 5 cut(s) 286, 327, 712, 1046, 1426
RsaNI GTAC 5 cut(s) 285, 326, 711, 1045, 1425
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 4 cut(s) 491, 1178, 1263, 1482
SatI GCNGC 3 cut(s) 60, 557, 855
Sau96I GGNCC 2 cut(s) 217, 691
SchI GAGTC 4 cut(s) 25, 329, 1058, 1740
ScrFI CCNGG 5 cut(s) 689, 785, 884, 1422, 1771
SduI GDGCHC 4 cut(s) 109, 191, 685, 1932
SfaNI GCATC 2 cut(s) 576, 636
SfcI CTRYAG 2 cut(s) 852, 1083
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 3 cut(s) 383, 590, 897
SmoI CTYRAG 3 cut(s) 383, 590, 897
SspMI CTAG 4 cut(s) 675, 858, 1116, 1527
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 5 cut(s) 687, 783, 882, 1420, 1769
StyI CCWWGG 4 cut(s) 97, 145, 973, 1538
TaaI ACNGT 8 cut(s) 23, 277, 311, 346, 1033, 1171, 1624, 1710
TaiI ACGT 4 cut(s) 615, 625, 1063, 1393
TaqI TCGA 7 cut(s) 88, 369, 939, 987, 1410, 1596, 1665
TfiI GAWTC 6 cut(s) 8, 253, 653, 1339, 1515, 1846
Tru1I TTAA 4 cut(s) 491, 1178, 1263, 1482
Tru9I TTAA 4 cut(s) 491, 1178, 1263, 1482
TscAI CASTG 2 cut(s) 1176, 1833
TseFI GTSAC 3 cut(s) 17, 271, 1171
TseI GCWGC 3 cut(s) 59, 556, 854
Tsp45I GTSAC 3 cut(s) 17, 271, 1171
TspDTI ATGAA 7 cut(s) 242, 464, 963, 1507, 1512, 1800, 1859
TspGWI ACGGA 4 cut(s) 209, 313, 1053, 1519
TspRI CASTG 2 cut(s) 1176, 1833
VpaK11BI GGWCC 1 cut(s) 217
VspI ATTAAT 2 cut(s) 491, 1263
XapI RAATTY 6 cut(s) 365, 428, 479, 935, 1400, 1787
XbaI TCTAGA 1 cut(s) 1115
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 1291
XmiI GTMKAC 2 cut(s) 605, 1314
XmnI GAANNNNTTC 1 cut(s) 1343
XspI CTAG 4 cut(s) 675, 858, 1116, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.