Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 119, 606 |
| AccI | GTMKAC | 1 cut(s) | 483 |
| AccIII | TCCGGA | 1 cut(s) | 473 |
| AclWI | GGATC | 2 cut(s) | 465, 478 |
| AcsI | RAATTY | 1 cut(s) | 1195 |
| AcyI | GRCGYC | 2 cut(s) | 444, 557 |
| AfaI | GTAC | 1 cut(s) | 742 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AgsI | TTSAA | 5 cut(s) | 106, 200, 381, 699, 1195 |
| AjnI | CCWGG | 1 cut(s) | 1045 |
| AluBI | AGCT | 6 cut(s) | 9, 81, 496, 895, 961, 1005 |
| AluI | AGCT | 6 cut(s) | 9, 81, 496, 895, 961, 1005 |
| Alw21I | GWGCWC | 1 cut(s) | 280 |
| Alw26I | GTCTC | 3 cut(s) | 53, 564, 816 |
| AlwI | GGATC | 2 cut(s) | 465, 478 |
| Aor13HI | TCCGGA | 1 cut(s) | 473 |
| ApeKI | GCWGC | 3 cut(s) | 354, 507, 1042 |
| ApoI | RAATTY | 1 cut(s) | 1195 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 187, 569 |
| AspLEI | GCGC | 1 cut(s) | 1021 |
| AspS9I | GGNCC | 1 cut(s) | 1114 |
| AsuHPI | GGTGA | 3 cut(s) | 560, 760, 1061 |
| AvaII | GGWCC | 1 cut(s) | 1114 |
| BamHI | GGATCC | 1 cut(s) | 470 |
| BanI | GGYRCC | 2 cut(s) | 119, 606 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 679, 711 |
| BauI | CACGAG | 2 cut(s) | 245, 927 |
| Bbv12I | GWGCWC | 1 cut(s) | 280 |
| BbvI | GCAGC | 3 cut(s) | 366, 519, 1054 |
| BccI | CCATC | 4 cut(s) | 389, 508, 540, 1084 |
| BciT130I | CCWGG | 1 cut(s) | 1047 |
| BcoDI | GTCTC | 3 cut(s) | 53, 564, 816 |
| BfoI | RGCGCY | 1 cut(s) | 1022 |
| BisI | GCNGC | 3 cut(s) | 355, 508, 1043 |
| BlpI | GCTNAGC | 2 cut(s) | 77, 891 |
| BlsI | GCNGC | 3 cut(s) | 356, 509, 1044 |
| Bme1390I | CCNGG | 1 cut(s) | 1047 |
| Bme18I | GGWCC | 1 cut(s) | 1114 |
| BmgT120I | GGNCC | 1 cut(s) | 1114 |
| BmiI | GGNNCC | 3 cut(s) | 121, 472, 608 |
| BmrFI | CCNGG | 1 cut(s) | 1047 |
| BmsI | GCATC | 4 cut(s) | 139, 465, 799, 826 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 77, 891 |
| BpuEI | CTTGAG | 1 cut(s) | 563 |
| BsaBI | GATNNNNATC | 1 cut(s) | 89 |
| BsaHI | GRCGYC | 2 cut(s) | 444, 557 |
| BsaI | GGTCTC | 1 cut(s) | 53 |
| BsaWI | WCCGGW | 1 cut(s) | 473 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse1I | ACTGG | 1 cut(s) | 735 |
| Bse8I | GATNNNNATC | 1 cut(s) | 89 |
| BseAI | TCCGGA | 1 cut(s) | 473 |
| BseBI | CCWGG | 1 cut(s) | 1047 |
| BseGI | GGATG | 2 cut(s) | 532, 1156 |
| BseJI | GATNNNNATC | 1 cut(s) | 89 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseNI | ACTGG | 1 cut(s) | 735 |
| BseXI | GCAGC | 3 cut(s) | 366, 519, 1054 |
| BsgI | GTGCAG | 1 cut(s) | 951 |
| BshNI | GGYRCC | 2 cut(s) | 119, 606 |
| BsiHKAI | GWGCWC | 1 cut(s) | 280 |
| BsiSI | CCGG | 2 cut(s) | 297, 474 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmAI | GTCTC | 3 cut(s) | 53, 564, 816 |
| BsmBI | CGTCTC | 1 cut(s) | 564 |
| BsmI | GAATGC | 2 cut(s) | 411, 1017 |
| Bso31I | GGTCTC | 1 cut(s) | 53 |
| Bsp1286I | GDGCHC | 1 cut(s) | 280 |
| Bsp13I | TCCGGA | 1 cut(s) | 473 |
| Bsp143I | GATC | 1 cut(s) | 470 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 77, 891 |
| BspEI | TCCGGA | 1 cut(s) | 473 |
| BspHI | TCATGA | 1 cut(s) | 793 |
| BspLI | GGNNCC | 3 cut(s) | 121, 472, 608 |
| BspPI | GGATC | 2 cut(s) | 465, 478 |
| BspT107I | GGYRCC | 2 cut(s) | 119, 606 |
| BspTNI | GGTCTC | 1 cut(s) | 53 |
| BsrI | ACTGG | 1 cut(s) | 735 |
| BssMI | GATC | 1 cut(s) | 470 |
| BssNI | GRCGYC | 2 cut(s) | 444, 557 |
| BssSI | CACGAG | 2 cut(s) | 245, 927 |
| Bst2BI | CACGAG | 2 cut(s) | 245, 927 |
| Bst2UI | CCWGG | 1 cut(s) | 1047 |
| Bst6I | CTCTTC | 1 cut(s) | 546 |
| BstACI | GRCGYC | 2 cut(s) | 444, 557 |
| BstC8I | GCNNGC | 4 cut(s) | 359, 934, 963, 1017 |
| BstDEI | CTNAG | 2 cut(s) | 77, 891 |
| BstF5I | GGATG | 2 cut(s) | 532, 1156 |
| BstH2I | RGCGCY | 1 cut(s) | 1022 |
| BstHHI | GCGC | 1 cut(s) | 1021 |
| BstKTI | GATC | 1 cut(s) | 473 |
| BstMAI | GTCTC | 3 cut(s) | 53, 564, 816 |
| BstMBI | GATC | 1 cut(s) | 470 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1175 |
| BstNI | CCWGG | 1 cut(s) | 1047 |
| BstNSI | RCATGY | 1 cut(s) | 647 |
| BstSCI | CCNGG | 1 cut(s) | 1045 |
| BstV1I | GCAGC | 3 cut(s) | 366, 519, 1054 |
| BstX2I | RGATCY | 1 cut(s) | 470 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 730 |
| BstYI | RGATCY | 1 cut(s) | 470 |
| BtsCI | GGATG | 2 cut(s) | 532, 1156 |
| BtsI | GCAGTG | 2 cut(s) | 525, 885 |
| BtsIMutI | CAGTG | 2 cut(s) | 525, 885 |
| Cac8I | GCNNGC | 4 cut(s) | 359, 934, 963, 1017 |
| CciI | TCATGA | 1 cut(s) | 793 |
| CfoI | GCGC | 1 cut(s) | 1021 |
| Cfr13I | GGNCC | 1 cut(s) | 1114 |
| CseI | GACGC | 2 cut(s) | 452, 546 |
| Csp6I | GTAC | 1 cut(s) | 741 |
| CviAII | CATG | 8 cut(s) | 204, 365, 410, 644, 716, 773, 794, 1142 |
| CviQI | GTAC | 1 cut(s) | 741 |
| DdeI | CTNAG | 2 cut(s) | 77, 891 |
| DpnI | GATC | 1 cut(s) | 472 |
| DpnII | GATC | 1 cut(s) | 470 |
| DraI | TTTAAA | 2 cut(s) | 145, 900 |
| Eam1104I | CTCTTC | 1 cut(s) | 546 |
| EarI | CTCTTC | 1 cut(s) | 546 |
| Eco31I | GGTCTC | 1 cut(s) | 53 |
| Eco47I | GGWCC | 1 cut(s) | 1114 |
| EcoRI | GAATTC | 1 cut(s) | 1195 |
| EcoRII | CCWGG | 1 cut(s) | 1045 |
| EcoT22I | ATGCAT | 2 cut(s) | 411, 792 |
| Esp3I | CGTCTC | 1 cut(s) | 564 |
| FaeI | CATG | 8 cut(s) | 207, 368, 413, 647, 719, 776, 797, 1145 |
| FatI | CATG | 8 cut(s) | 203, 364, 409, 643, 715, 772, 793, 1141 |
| FauNDI | CATATG | 1 cut(s) | 940 |
| FblI | GTMKAC | 1 cut(s) | 483 |
| Fnu4HI | GCNGC | 3 cut(s) | 355, 508, 1043 |
| FokI | GGATG | 2 cut(s) | 519, 1163 |
| Fsp4HI | GCNGC | 3 cut(s) | 355, 508, 1043 |
| GlaI | GCGC | 1 cut(s) | 1020 |
| GluI | GCNGC | 3 cut(s) | 355, 508, 1043 |
| HaeII | RGCGCY | 1 cut(s) | 1022 |
| HapII | CCGG | 2 cut(s) | 297, 474 |
| HgaI | GACGC | 2 cut(s) | 452, 546 |
| HhaI | GCGC | 1 cut(s) | 1021 |
| Hin1I | GRCGYC | 2 cut(s) | 444, 557 |
| Hin1II | CATG | 8 cut(s) | 207, 368, 413, 647, 719, 776, 797, 1145 |
| Hin6I | GCGC | 1 cut(s) | 1019 |
| HinP1I | GCGC | 1 cut(s) | 1019 |
| HindIII | AAGCTT | 2 cut(s) | 7, 893 |
| HinfI | GANTC | 6 cut(s) | 16, 22, 235, 601, 908, 1122 |
| HpaII | CCGG | 2 cut(s) | 297, 474 |
| HphI | GGTGA | 3 cut(s) | 560, 760, 1061 |
| Hpy166II | GTNNAC | 2 cut(s) | 484, 641 |
| Hpy188I | TCNGA | 7 cut(s) | 21, 388, 461, 564, 877, 1010, 1201 |
| Hpy188III | TCNNGA | 6 cut(s) | 307, 474, 794, 821, 905, 1148 |
| Hpy8I | GTNNAC | 2 cut(s) | 484, 641 |
| Hpy99I | CGWCG | 1 cut(s) | 446 |
| HpyAV | CCTTC | 5 cut(s) | 112, 155, 315, 559, 970 |
| HpyCH4IV | ACGT | 1 cut(s) | 372 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1175 |
| HpyF3I | CTNAG | 2 cut(s) | 77, 891 |
| HpySE526I | ACGT | 1 cut(s) | 372 |
| Hsp92I | GRCGYC | 2 cut(s) | 444, 557 |
| Hsp92II | CATG | 8 cut(s) | 207, 368, 413, 647, 719, 776, 797, 1145 |
| HspAI | GCGC | 1 cut(s) | 1019 |
| Kpn2I | TCCGGA | 1 cut(s) | 473 |
| Kzo9I | GATC | 1 cut(s) | 470 |
| LmnI | GCTCC | 1 cut(s) | 275 |
| Lsp1109I | GCAGC | 3 cut(s) | 366, 519, 1054 |
| LweI | GCATC | 4 cut(s) | 139, 465, 799, 826 |
| MaeII | ACGT | 1 cut(s) | 372 |
| MaeIII | GTNAC | 3 cut(s) | 111, 979, 1159 |
| MalI | GATC | 1 cut(s) | 472 |
| MboI | GATC | 1 cut(s) | 470 |
| MboII | GAAGA | 7 cut(s) | 411, 414, 425, 535, 563, 1051, 1062 |
| MfeI | CAATTG | 1 cut(s) | 1179 |
| MflI | RGATCY | 1 cut(s) | 470 |
| MhlI | GDGCHC | 1 cut(s) | 280 |
| MluCI | AATT | 5 cut(s) | 753, 916, 1154, 1179, 1195 |
| MlyI | GAGTC | 2 cut(s) | 902, 1116 |
| MmeI | TCCRAC | 1 cut(s) | 80 |
| MnlI | CCTC | 8 cut(s) | 225, 296, 461, 538, 547, 584, 755, 1149 |
| Mph1103I | ATGCAT | 2 cut(s) | 411, 792 |
| MroI | TCCGGA | 1 cut(s) | 473 |
| MroXI | GAANNNNTTC | 2 cut(s) | 187, 569 |
| MseI | TTAA | 4 cut(s) | 144, 254, 899, 1055 |
| MspI | CCGG | 2 cut(s) | 297, 474 |
| MspR9I | CCNGG | 1 cut(s) | 1047 |
| MunI | CAATTG | 1 cut(s) | 1179 |
| Mva1269I | GAATGC | 2 cut(s) | 411, 1017 |
| MvaI | CCWGG | 1 cut(s) | 1047 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1175 |
| NdeI | CATATG | 1 cut(s) | 940 |
| NdeII | GATC | 1 cut(s) | 470 |
| NlaIII | CATG | 8 cut(s) | 207, 368, 413, 647, 719, 776, 797, 1145 |
| NlaIV | GGNNCC | 3 cut(s) | 121, 472, 608 |
| NsiI | ATGCAT | 2 cut(s) | 411, 792 |
| NspI | RCATGY | 1 cut(s) | 647 |
| PagI | TCATGA | 1 cut(s) | 793 |
| PctI | GAATGC | 2 cut(s) | 411, 1017 |
| PdmI | GAANNNNTTC | 2 cut(s) | 187, 569 |
| PfeI | GAWTC | 4 cut(s) | 16, 22, 235, 601 |
| PkrI | GCNGC | 3 cut(s) | 356, 509, 1044 |
| PleI | GAGTC | 2 cut(s) | 902, 1116 |
| PpsI | GAGTC | 2 cut(s) | 902, 1116 |
| Psp6I | CCWGG | 1 cut(s) | 1045 |
| PspGI | CCWGG | 1 cut(s) | 1045 |
| PspN4I | GGNNCC | 3 cut(s) | 121, 472, 608 |
| PspPI | GGNCC | 1 cut(s) | 1114 |
| PsuI | RGATCY | 1 cut(s) | 470 |
| RsaI | GTAC | 1 cut(s) | 742 |
| RsaNI | GTAC | 1 cut(s) | 741 |
| SaqAI | TTAA | 4 cut(s) | 144, 254, 899, 1055 |
| SatI | GCNGC | 3 cut(s) | 355, 508, 1043 |
| Sau3AI | GATC | 1 cut(s) | 470 |
| Sau96I | GGNCC | 1 cut(s) | 1114 |
| SchI | GAGTC | 2 cut(s) | 902, 1116 |
| ScrFI | CCNGG | 1 cut(s) | 1047 |
| SduI | GDGCHC | 1 cut(s) | 280 |
| SfaNI | GCATC | 4 cut(s) | 139, 465, 799, 826 |
| SinI | GGWCC | 1 cut(s) | 1114 |
| SmlI | CTYRAG | 1 cut(s) | 542 |
| SmoI | CTYRAG | 1 cut(s) | 542 |
| Sse9I | AATT | 5 cut(s) | 753, 916, 1154, 1179, 1195 |
| StyD4I | CCNGG | 1 cut(s) | 1045 |
| TaiI | ACGT | 1 cut(s) | 375 |
| TaqI | TCGA | 4 cut(s) | 93, 238, 441, 820 |
| TasI | AATT | 5 cut(s) | 753, 916, 1154, 1179, 1195 |
| TatI | WGTACW | 1 cut(s) | 740 |
| TfiI | GAWTC | 4 cut(s) | 16, 22, 235, 601 |
| Tru1I | TTAA | 4 cut(s) | 144, 254, 899, 1055 |
| Tru9I | TTAA | 4 cut(s) | 144, 254, 899, 1055 |
| TscAI | CASTG | 2 cut(s) | 525, 892 |
| TseI | GCWGC | 3 cut(s) | 354, 507, 1042 |
| TspDTI | ATGAA | 6 cut(s) | 144, 381, 426, 732, 989, 1167 |
| TspGWI | ACGGA | 1 cut(s) | 1101 |
| TspRI | CASTG | 2 cut(s) | 525, 892 |
| VpaK11BI | GGWCC | 1 cut(s) | 1114 |
| XapI | RAATTY | 1 cut(s) | 1195 |
| XceI | RCATGY | 1 cut(s) | 647 |
| XmiI | GTMKAC | 1 cut(s) | 483 |
| XmnI | GAANNNNTTC | 2 cut(s) | 187, 569 |
| Zsp2I | ATGCAT | 2 cut(s) | 411, 792 |