Prupe.5G195800_v2.0.a1

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000370
Physical Location & Seq
Reverse (-)
15862364 .. 15872924
10561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G195800.1

Sequence Viewer

Length: 609 bp
ATGTCGATGGTGGAGTATGAACACAAGTTTAATGAGCTGTCTAGATTTGCTCCAGAGCTGGTGGCCACTGAGGAGGACATATGTAGACGGTTTGAGGAAGGGTTATGGTGGGAGATTCAGGCAGTGGTTACTGCGAACACTTACCCAAACATGAGGGCTTTGGCTCAGGTAGCTGAAAGGGTGGCGAGGAAATTCAGTGGGAGTGCGGGCAGGCACCGCAGAGATACATCAGGGTTTGGTGGGCCAAGTCAGGGTCTATCAAAGAGAGGAGGATCTAGCTCCAGTTCTGCTAGCGGCGGATGGTCAGGAGGACGAGGATCTAGTTCTAGTAGTAGGAGATCTGATTCTCGTTCAGCATGGACTCAGTATTCTAGACAGCAGTCTACAGCCAGCACAGCCAGGACTCCTTCCCGGCAGATAGGTTTGATGTGTTACAATTGTGGGCAAATCGGGCATTTTGCGAAGGATTGTCCTGGCTATACTCAGGGAGGTGGACAAAGTCAGAGTAGTAGCCTGACATGCTACTTTTGTGGGCAAGTGGGACATACCAAGAGAAGCTGCCTAATTATACTCCAGAGTGATGCAGTAGTCCAGGGGACTGAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

203

Amino Acids

21.85

Weight (kDa)

9.23

Isoelectric Point (pI)

75.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AccI GTMKAC 2 cut(s) 85, 383
AciI CCGC 4 cut(s) 206, 217, 294, 297
AclWI GGATC 2 cut(s) 280, 325
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 251
AjnI CCWGG 3 cut(s) 398, 472, 591
AluBI AGCT 5 cut(s) 37, 58, 173, 279, 558
AluI AGCT 5 cut(s) 37, 58, 173, 279, 558
AlwI GGATC 2 cut(s) 280, 325
AoxI GGCC 3 cut(s) 63, 242, 603
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 412
AsuNHI GCTAGC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 545
BccI CCATC 1 cut(s) 294
BciT130I CCWGG 3 cut(s) 400, 474, 593
BcnI CCSGG 1 cut(s) 412
BfaI CTAG 7 cut(s) 42, 276, 291, 321, 327, 372, 607
BfmI CTRYAG 1 cut(s) 384
BglII AGATCT 1 cut(s) 338
BisI GCNGC 2 cut(s) 295, 559
BlsI GCNGC 2 cut(s) 296, 560
Bme1390I CCNGG 4 cut(s) 400, 412, 474, 593
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 4 cut(s) 400, 412, 474, 593
BmsI GCATC 1 cut(s) 571
BmtI GCTAGC 1 cut(s) 294
BoxI GACNNNNGTC 1 cut(s) 379
BpmI CTGGAG 3 cut(s) 36, 265, 557
Bpu10I CCTNAGC 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 592
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 282
BseBI CCWGG 3 cut(s) 400, 474, 593
BseDI CCNNGG 1 cut(s) 592
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 5 cut(s) 60, 179, 377, 497, 591
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 86, 282
BseXI GCAGC 1 cut(s) 545
BshFI GGCC 3 cut(s) 65, 244, 605
BshNI GGYRCC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 412
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 3 cut(s) 65, 244, 605
Bsp143I GATC 3 cut(s) 272, 317, 338
BspACI CCGC 4 cut(s) 206, 217, 294, 297
BspANI GGCC 3 cut(s) 65, 244, 605
BspCNI CTCAG 5 cut(s) 61, 178, 376, 496, 592
BspLI GGNNCC 1 cut(s) 215
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 2 cut(s) 280, 325
BspT107I GGYRCC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 592
BssMI GATC 3 cut(s) 272, 317, 338
Bst2UI CCWGG 3 cut(s) 400, 474, 593
Bst4CI ACNGT 1 cut(s) 90
BstC8I GCNNGC 4 cut(s) 208, 212, 292, 391
BstDEI CTNAG 5 cut(s) 69, 165, 363, 483, 600
BstF5I GGATG 1 cut(s) 305
BstKTI GATC 3 cut(s) 275, 320, 341
BstMBI GATC 3 cut(s) 272, 317, 338
BstMWI GCNNNNNNNGC 5 cut(s) 170, 216, 395, 451, 519
BstNI CCWGG 3 cut(s) 400, 474, 593
BstNSI RCATGY 1 cut(s) 522
BstPAI GACNNNNGTC 1 cut(s) 379
BstSCI CCNGG 4 cut(s) 398, 410, 472, 591
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 545
BstX2I RGATCY 3 cut(s) 272, 317, 338
BstYI RGATCY 3 cut(s) 272, 317, 338
BsuRI GGCC 3 cut(s) 65, 244, 605
BtsCI GGATG 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 66, 129, 202
Cac8I GCNNGC 4 cut(s) 208, 212, 292, 391
Cfr13I GGNCC 1 cut(s) 242
CviAII CATG 3 cut(s) 151, 357, 519
DdeI CTNAG 5 cut(s) 69, 165, 363, 483, 600
DpnI GATC 3 cut(s) 274, 319, 340
DpnII GATC 3 cut(s) 272, 317, 338
EaeI YGGCCR 1 cut(s) 63
EciI GGCGGA 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 398, 472, 591
FaeI CATG 3 cut(s) 154, 360, 522
FaqI GGGAC 1 cut(s) 555
FatI CATG 3 cut(s) 150, 356, 518
FauI CCCGC 1 cut(s) 199
FauNDI CATATG 1 cut(s) 80
FblI GTMKAC 2 cut(s) 85, 383
Fnu4HI GCNGC 2 cut(s) 295, 559
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 2 cut(s) 295, 559
FspBI CTAG 7 cut(s) 42, 276, 291, 321, 327, 372, 607
GluI GCNGC 2 cut(s) 295, 559
GsuI CTGGAG 3 cut(s) 36, 265, 557
HaeIII GGCC 3 cut(s) 65, 244, 605
HapII CCGG 1 cut(s) 412
Hin1II CATG 3 cut(s) 154, 360, 522
HinfI GANTC 4 cut(s) 115, 344, 361, 403
HpaII CCGG 1 cut(s) 412
Hpy166II GTNNAC 3 cut(s) 86, 384, 494
Hpy188I TCNGA 2 cut(s) 343, 504
Hpy188III TCNNGA 5 cut(s) 42, 53, 306, 372, 574
Hpy8I GTNNAC 3 cut(s) 86, 384, 494
HpyAV CCTTC 3 cut(s) 92, 417, 457
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 584
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 216, 395, 451, 519
HpyF3I CTNAG 5 cut(s) 69, 165, 363, 483, 600
Hsp92II CATG 3 cut(s) 154, 360, 522
Kzo9I GATC 3 cut(s) 272, 317, 338
LmnI GCTCC 2 cut(s) 55, 284
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 1 cut(s) 571
MaeI CTAG 7 cut(s) 42, 276, 291, 321, 327, 372, 607
MaeIII GTNAC 2 cut(s) 127, 431
MalI GATC 3 cut(s) 274, 319, 340
MboI GATC 3 cut(s) 272, 317, 338
MfeI CAATTG 1 cut(s) 436
MflI RGATCY 3 cut(s) 272, 317, 338
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 3 cut(s) 191, 436, 564
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 2 cut(s) 355, 397
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 4 cut(s) 400, 412, 474, 593
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 3 cut(s) 400, 474, 593
MwoI GCNNNNNNNGC 5 cut(s) 170, 216, 395, 451, 519
NciI CCSGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 80
NdeII GATC 3 cut(s) 272, 317, 338
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 3 cut(s) 154, 360, 522
NlaIV GGNNCC 1 cut(s) 215
NspI RCATGY 1 cut(s) 522
PceI AGGCCT 1 cut(s) 605
PfeI GAWTC 2 cut(s) 115, 344
PflFI GACNNNGTC 1 cut(s) 498
PkrI GCNGC 2 cut(s) 296, 560
PleI GAGTC 2 cut(s) 355, 397
PpsI GAGTC 2 cut(s) 355, 397
PshAI GACNNNNGTC 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 398, 472, 591
PspGI CCWGG 3 cut(s) 398, 472, 591
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 3 cut(s) 272, 317, 338
PsyI GACNNNGTC 1 cut(s) 498
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 2 cut(s) 295, 559
Sau3AI GATC 3 cut(s) 272, 317, 338
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 355, 397
ScrFI CCNGG 4 cut(s) 400, 412, 474, 593
SetI ASST 8 cut(s) 39, 60, 171, 175, 281, 424, 493, 560
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 1 cut(s) 384
Sse9I AATT 3 cut(s) 191, 436, 564
SseBI AGGCCT 1 cut(s) 605
SsiI CCGC 4 cut(s) 206, 217, 294, 297
SspMI CTAG 7 cut(s) 42, 276, 291, 321, 327, 372, 607
StuI AGGCCT 1 cut(s) 605
StyD4I CCNGG 4 cut(s) 398, 410, 472, 591
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 191, 436, 564
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 2 cut(s) 115, 344
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 3 cut(s) 73, 129, 202
TseI GCWGC 1 cut(s) 558
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 3 cut(s) 73, 129, 202
Tth111I GACNNNGTC 1 cut(s) 498
XapI RAATTY 1 cut(s) 191
XbaI TCTAGA 2 cut(s) 41, 371
XceI RCATGY 1 cut(s) 522
XmiI GTMKAC 2 cut(s) 85, 383
XspI CTAG 7 cut(s) 42, 276, 291, 321, 327, 372, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.