Retrotransposon gag protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 5 - 77 | 1.7e-10 | Retrotransposon gag protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 101 |
| AclWI | GGATC | 1 cut(s) | 294 |
| AcsI | RAATTY | 1 cut(s) | 95 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 127 |
| AgsI | TTSAA | 1 cut(s) | 186 |
| AjnI | CCWGG | 3 cut(s) | 23, 138, 213 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 32, 64, 166, 198 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 1 cut(s) | 302 |
| AluI | AGCT | 1 cut(s) | 302 |
| Alw26I | GTCTC | 1 cut(s) | 314 |
| AlwI | GGATC | 1 cut(s) | 294 |
| AoxI | GGCC | 1 cut(s) | 227 |
| ApoI | RAATTY | 1 cut(s) | 95 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 44 |
| AsuHPI | GGTGA | 1 cut(s) | 10 |
| BccI | CCATC | 1 cut(s) | 212 |
| BciT130I | CCWGG | 3 cut(s) | 25, 140, 215 |
| BcoDI | GTCTC | 1 cut(s) | 314 |
| BfaI | CTAG | 2 cut(s) | 65, 334 |
| Bme1390I | CCNGG | 3 cut(s) | 25, 140, 215 |
| BmrFI | CCNGG | 3 cut(s) | 25, 140, 215 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 127 |
| Bse1I | ACTGG | 1 cut(s) | 267 |
| BseBI | CCWGG | 3 cut(s) | 25, 140, 215 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BseMII | CTCAG | 1 cut(s) | 271 |
| BseNI | ACTGG | 1 cut(s) | 267 |
| BshFI | GGCC | 1 cut(s) | 229 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BsmAI | GTCTC | 1 cut(s) | 314 |
| BsnI | GGCC | 1 cut(s) | 229 |
| Bsp143I | GATC | 1 cut(s) | 286 |
| BspANI | GGCC | 1 cut(s) | 229 |
| BspCNI | CTCAG | 1 cut(s) | 270 |
| BspPI | GGATC | 1 cut(s) | 294 |
| BsrI | ACTGG | 1 cut(s) | 267 |
| BssMI | GATC | 1 cut(s) | 286 |
| Bst2UI | CCWGG | 3 cut(s) | 25, 140, 215 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| BstDEI | CTNAG | 4 cut(s) | 144, 224, 257, 324 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstKTI | GATC | 1 cut(s) | 289 |
| BstMAI | GTCTC | 1 cut(s) | 314 |
| BstMBI | GATC | 1 cut(s) | 286 |
| BstNI | CCWGG | 3 cut(s) | 25, 140, 215 |
| BstSCI | CCNGG | 3 cut(s) | 23, 138, 213 |
| BsuRI | GGCC | 1 cut(s) | 229 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BtsIMutI | CAGTG | 2 cut(s) | 9, 69 |
| CviAII | CATG | 1 cut(s) | 178 |
| CviJI | RGCY | 4 cut(s) | 131, 143, 229, 302 |
| CviKI_1 | RGCY | 4 cut(s) | 131, 143, 229, 302 |
| DdeI | CTNAG | 4 cut(s) | 144, 224, 257, 324 |
| DpnI | GATC | 1 cut(s) | 288 |
| DpnII | GATC | 1 cut(s) | 286 |
| Eco147I | AGGCCT | 1 cut(s) | 229 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| EcoRII | CCWGG | 3 cut(s) | 23, 138, 213 |
| FaeI | CATG | 1 cut(s) | 181 |
| FaiI | YATR | 5 cut(s) | 101, 161, 179, 273, 299 |
| FatI | CATG | 1 cut(s) | 177 |
| FokI | GGATG | 1 cut(s) | 230 |
| FspBI | CTAG | 2 cut(s) | 65, 334 |
| HaeIII | GGCC | 1 cut(s) | 229 |
| Hin1II | CATG | 1 cut(s) | 181 |
| HinfI | GANTC | 2 cut(s) | 210, 310 |
| HphI | GGTGA | 1 cut(s) | 10 |
| Hpy188I | TCNGA | 1 cut(s) | 260 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 92 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 170, 275 |
| HpyF3I | CTNAG | 4 cut(s) | 144, 224, 257, 324 |
| Hsp92II | CATG | 1 cut(s) | 181 |
| Kzo9I | GATC | 1 cut(s) | 286 |
| LpnPI | CCDG | 7 cut(s) | 10, 37, 125, 152, 200, 227, 248 |
| MaeI | CTAG | 2 cut(s) | 65, 334 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 1 cut(s) | 288 |
| MboI | GATC | 1 cut(s) | 286 |
| MboII | GAAGA | 3 cut(s) | 98, 101, 164 |
| MluCI | AATT | 2 cut(s) | 95, 252 |
| MnlI | CCTC | 1 cut(s) | 71 |
| MroXI | GAANNNNTTC | 1 cut(s) | 44 |
| MseI | TTAA | 1 cut(s) | 237 |
| MspR9I | CCNGG | 3 cut(s) | 25, 140, 215 |
| MvaI | CCWGG | 3 cut(s) | 25, 140, 215 |
| NdeII | GATC | 1 cut(s) | 286 |
| NlaIII | CATG | 1 cut(s) | 181 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| PceI | AGGCCT | 1 cut(s) | 229 |
| PdmI | GAANNNNTTC | 1 cut(s) | 44 |
| PfeI | GAWTC | 2 cut(s) | 210, 310 |
| PfoI | TCCNGGA | 1 cut(s) | 213 |
| PsiI | TTATAA | 1 cut(s) | 101 |
| Psp6I | CCWGG | 3 cut(s) | 23, 138, 213 |
| PspGI | CCWGG | 3 cut(s) | 23, 138, 213 |
| SaqAI | TTAA | 1 cut(s) | 237 |
| Sau3AI | GATC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 3 cut(s) | 25, 140, 215 |
| SetI | ASST | 5 cut(s) | 26, 123, 249, 272, 304 |
| Sse9I | AATT | 2 cut(s) | 95, 252 |
| SseBI | AGGCCT | 1 cut(s) | 229 |
| SspI | AATATT | 1 cut(s) | 59 |
| SspMI | CTAG | 2 cut(s) | 65, 334 |
| StuI | AGGCCT | 1 cut(s) | 229 |
| StyD4I | CCNGG | 3 cut(s) | 23, 138, 213 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TaqI | TCGA | 2 cut(s) | 91, 289 |
| TasI | AATT | 2 cut(s) | 95, 252 |
| TfiI | GAWTC | 2 cut(s) | 210, 310 |
| Tru1I | TTAA | 1 cut(s) | 237 |
| Tru9I | TTAA | 1 cut(s) | 237 |
| TscAI | CASTG | 2 cut(s) | 16, 76 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 1 cut(s) | 98 |
| TspRI | CASTG | 2 cut(s) | 16, 76 |
| XapI | RAATTY | 1 cut(s) | 95 |
| XbaI | TCTAGA | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 44 |
| XspI | CTAG | 2 cut(s) | 65, 334 |