Rh2CG317500

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000370
Physical Location & Seq
Forward (+)
40478791 .. 40479295
505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG317500.1

Sequence Viewer

Length: 505 bp
ATGGTGGATACAGACGATAAAAAGGCAAGACGGTTCATTGGAGGACTAAATTCGAACATTCGAAGAATGGTCACTTCACGTGGAATCACGTACGAAGAAGCTGTGGACAAAGCCTTAACTGACGAGGAGGAAAATCAAAAGTACCGCCTGGAGAAGGAAAGAGAGAATAGCTTCCGAGGAAAAAGAAGCCATCCAGTGCCTAACCAGAAAGGTGGACAACCATGGGAGCAGCAAAAACGGAGAGACGCATTTCAAAAGCCAACAACATCAACTCAAAAAGGAAAGGAGGTGGCAAGAGGCCCAATTCGTTGTTTCAACTGTGGAGGAATGGGGCACATGTCTAATTCTTGTCCAAAGCCACGCCGCCTTCCAGGATCTTGTTTCAATTATGGTAAGATGGGACACTTCTCAAATCAGTGCGATGCACCGAGGCAAACAAATAATCCACCAACACCTCGTCCCATCCAGCTAAATGCCATAGCTTCTGAGAACATTGTGATGGAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

168

Amino Acids

19.1

Weight (kDa)

9.74

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 103 - 119 1.4e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 145, 364
AclWI GGATC 1 cut(s) 382
AcsI RAATTY 1 cut(s) 49
AcvI CACGTG 1 cut(s) 80
AfaI GTAC 2 cut(s) 92, 143
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 254, 316, 385
AjnI CCWGG 2 cut(s) 147, 370
AluBI AGCT 4 cut(s) 101, 171, 469, 482
AluI AGCT 4 cut(s) 101, 171, 469, 482
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 382
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 299
AsuII TTCGAA 2 cut(s) 53, 61
BaeGI GKGCMC 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 80
BbvI GCAGC 1 cut(s) 241
BccI CCATC 4 cut(s) 198, 391, 470, 493
BciT130I CCWGG 2 cut(s) 149, 372
BcoDI GTCTC 1 cut(s) 237
BisI GCNGC 2 cut(s) 230, 364
BlsI GCNGC 2 cut(s) 231, 365
Bme1390I CCNGG 2 cut(s) 149, 372
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 149, 372
BmsI GCATC 1 cut(s) 412
BpmI CTGGAG 1 cut(s) 170
Bpu14I TTCGAA 2 cut(s) 53, 61
BsaAI YACGTR 2 cut(s) 80, 90
BsaJI CCNNGG 3 cut(s) 175, 221, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 2 cut(s) 149, 372
BseDI CCNNGG 3 cut(s) 175, 221, 428
BseGI GGATG 2 cut(s) 190, 462
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 300
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 414, 444
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 237
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 414, 444
BsnI GGCC 1 cut(s) 300
Bsp119I TTCGAA 2 cut(s) 53, 61
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 374
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 2 cut(s) 145, 364
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 478
BspPI GGATC 1 cut(s) 382
BspT104I TTCGAA 2 cut(s) 53, 61
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 175, 221, 428
BssMI GATC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 149, 372
Bst4CI ACNGT 2 cut(s) 33, 320
BstBAI YACGTR 2 cut(s) 80, 90
BstBI TTCGAA 2 cut(s) 53, 61
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 1 cut(s) 221
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 190, 462
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 1 cut(s) 374
BstNI CCWGG 2 cut(s) 149, 372
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 2 cut(s) 147, 370
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 374
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 190, 462
BtsIMutI CAGTG 2 cut(s) 201, 422
Cfr13I GGNCC 1 cut(s) 299
CseI GACGC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 91, 142
CviAII CATG 2 cut(s) 222, 337
CviJI RGCY 9 cut(s) 101, 113, 171, 189, 259, 300, 358, 469, 482
CviKI_1 RGCY 9 cut(s) 101, 113, 171, 189, 259, 300, 358, 469, 482
CviQI GTAC 2 cut(s) 91, 142
DdeI CTNAG 1 cut(s) 486
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 147, 370
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 2 cut(s) 225, 340
FaiI YATR 4 cut(s) 223, 338, 390, 479
FaqI GGGAC 2 cut(s) 414, 444
FatI CATG 2 cut(s) 221, 336
Fnu4HI GCNGC 2 cut(s) 230, 364
FokI GGATG 2 cut(s) 177, 449
Fsp4HI GCNGC 2 cut(s) 230, 364
GluI GCNGC 2 cut(s) 230, 364
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 300
HgaI GACGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 225, 340
HinfI GANTC 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 106, 215
Hpy188I TCNGA 2 cut(s) 176, 487
Hpy8I GTNNAC 2 cut(s) 106, 215
HpyAV CCTTC 2 cut(s) 148, 377
HpyCH4III ACNGT 2 cut(s) 33, 320
HpyCH4IV ACGT 2 cut(s) 79, 89
HpyCH4V TGCA 1 cut(s) 425
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 2 cut(s) 79, 89
Hsp92II CATG 2 cut(s) 225, 340
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 134, 161, 207, 218, 357, 384, 479
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 412
MaeII ACGT 2 cut(s) 79, 89
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 2 cut(s) 75, 107
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 4 cut(s) 49, 303, 343, 385
MnlI CCTC 9 cut(s) 35, 118, 121, 170, 280, 290, 317, 423, 465
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 149, 372
MvaI CCWGG 2 cut(s) 149, 372
NcoI CCATGG 1 cut(s) 221
NdeII GATC 1 cut(s) 374
NlaIII CATG 2 cut(s) 225, 340
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 1 cut(s) 340
NspV TTCGAA 2 cut(s) 53, 61
PciI ACATGT 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 84
Pfl23II CGTACG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 2 cut(s) 231, 365
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
Ppu21I YACGTR 2 cut(s) 80, 90
PscI ACATGT 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 147, 370
PspCI CACGTG 1 cut(s) 80
PspGI CCWGG 2 cut(s) 147, 370
PspLI CGTACG 1 cut(s) 90
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 2 cut(s) 92, 143
RsaNI GTAC 2 cut(s) 91, 142
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 2 cut(s) 230, 364
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 149, 372
SduI GDGCHC 1 cut(s) 336
SetI ASST 9 cut(s) 82, 92, 103, 173, 214, 291, 457, 471, 484
SfaNI GCATC 1 cut(s) 412
SfuI TTCGAA 2 cut(s) 53, 61
SmiMI CAYNNNNRTG 1 cut(s) 497
Sse9I AATT 4 cut(s) 49, 303, 343, 385
SsiI CCGC 2 cut(s) 145, 364
StyD4I CCNGG 2 cut(s) 147, 370
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 33, 320
TaiI ACGT 2 cut(s) 82, 92
TaqI TCGA 2 cut(s) 53, 61
TasI AATT 4 cut(s) 49, 303, 343, 385
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 201, 422
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 2 cut(s) 201, 422
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.