pycom17g07780

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000370
Physical Location & Seq
Reverse (-)
5701488 .. 5701898
411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07780.1

Sequence Viewer

Length: 324 bp
ATGTATAATTTGAAGCTGGATAAGTTTGAGGGCCACGAGGGTTTTGAGGGAGCTGAGCGATGGCTGGAGCATATTAAAAAGACTTTTCGAGTGTTGCATAATCAGGGGAATCTTCCTGTTGAAAAGTGGGTAGAGACGACTTCATGGTTCTTGGGTAAGGAATCATCATCCTGGTGGGAACATGAGGTTCTTAGTTTGACCCCAGAGGAAAGGGCTAACTGGGAGATGTTTAAACATTTGTTTCGGAAAAGGAGGTTCACTGATTTATCTCGTTATTATTCGGAGGTTGTTGCCAATCCGGGTGAGATGCTTCATCGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

108

Amino Acids

13.07

Weight (kDa)

6.59

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29481 FvH4_2g11454 FvH4_3g19661 FvH4_3g28463 FvH4_3g31691 FvH4_3g34551 FvH4_3g35241 FvH4_4g06575 FvH4_4g09082 FvH4_4g15804 FvH4_4g15805 FvH4_4g16178 FvH4_4g16282 FvH4_5g25163 FvH4_6g27413 FvH4_7g02962 FvH4_7g04361
malus_domestica MD01G1095000.v1.1 MD02G1270200.v1.1 MD02G1270300.v1.1 MD02G1270400.v1.1 MD06G1059100.v1.1 MD08G1226500.v1.1
prunus_persica Prupe.1G169500_v2.0.a1 Prupe.5G195800_v2.0.a1
pyrus_communis pycom01g00010 pycom01g00770 pycom02g23140 pycom03g11760 pycom04g06090 pycom05g06900 pycom05g08070 pycom05g14500 pycom06g03050 pycom07g06250 pycom07g07540 pycom07g10580 pycom08g04990 pycom1146g00060 pycom11g01080 pycom11g15270 pycom11g15460 pycom11g24900 pycom12419g00150 pycom12424g00120 pycom13g08740 pycom13g24950 pycom13g25960 pycom13g26030 pycom13g27820 pycom16g23270 pycom16g25020 pycom16g25960 pycom17g07780 pycom17g08210 pycom17g13100
rosa_chinensis RchiOBHm_Chr1g0329421 RchiOBHm_Chr4g0397711 RchiOBHm_Chr4g0403481 RchiOBHm_Chr5g0019091 RchiOBHm_Chr5g0049101
rosa_laevigata RLG00000029892
rosa_multiflora Rmu_sc0001866.1_g000007
rosa_roxburghii Rroxscaffold_2G00094160 Rroxscaffold_3G00229110 Rroxscaffold_4G00321100 Rroxscaffold_7G00196040 Rroxscaffold_7G00196280
rosa_rugosa Rorug05G0160500 Rorug06G0096500
rosa_samantha Rh1AG098600 Rh1AG098800 Rh1BG078200 Rh1BG078700 Rh1BG178500 Rh1CG094600 Rh1CG094900 Rh1DG101700 Rh1DG109600 Rh2AG175800 Rh2AG175900 Rh2AG511400 Rh2BG114700 Rh2CG042200 Rh2CG116600 Rh2CG317500 Rh2DG327700 Rh2DG337800 Rh4CG142700 Rh4DG113100 Rh5BG335800 Rh5CG360600 Rh5DG352000 Rh6BG071400 Rh6BG417100 Rh6CG463300 Rh6CG463400 Rh7BG186600 Rh7CG196500 Rh7CG196600 Rh7CG448900 Rh7DG228300
rosa_wichuraiana Rw4G006560 Rw4G017340 Rw5G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 13, 122
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 16, 53
AluI AGCT 2 cut(s) 16, 53
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 314
BauI CACGAG 1 cut(s) 35
BccI CCATC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 172
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 172, 300
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 172, 300
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 224
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 33
Bsp1720I GCTNAGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 224
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 54, 191
BstF5I GGATG 1 cut(s) 167
BstMAI GTCTC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 170, 298
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 31
CviAII CATG 2 cut(s) 144, 182
CviJI RGCY 5 cut(s) 16, 33, 53, 64, 215
CviKI_1 RGCY 5 cut(s) 16, 33, 53, 64, 215
DdeI CTNAG 2 cut(s) 54, 191
DraI TTTAAA 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 147, 185
FaiI YATR 5 cut(s) 6, 72, 99, 145, 183
FatI CATG 2 cut(s) 143, 181
FokI GGATG 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 299
Hin1II CATG 2 cut(s) 147, 185
HinfI GANTC 2 cut(s) 109, 161
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 246, 283
Hpy8I GTNNAC 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 54, 191
Hsp92II CATG 2 cut(s) 147, 185
LmnI GCTCC 2 cut(s) 50, 67
LpnPI CCDG 9 cut(s) 2, 50, 89, 129, 157, 184, 205, 216, 312
LweI GCATC 1 cut(s) 297
MboII GAAGA 1 cut(s) 104
MluCI AATT 1 cut(s) 7
MnlI CCTC 7 cut(s) 22, 31, 40, 178, 199, 246, 277
MseI TTAA 2 cut(s) 75, 231
MslI CAYNNNNRTG 1 cut(s) 172
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 172, 300
MssI GTTTAAAC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 172
NciI CCSGG 1 cut(s) 300
NlaIII CATG 2 cut(s) 147, 185
PfeI GAWTC 2 cut(s) 109, 161
PmeI GTTTAAAC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspPI GGNCC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 172
SaqAI TTAA 2 cut(s) 75, 231
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 172, 300
SetI ASST 5 cut(s) 18, 55, 189, 257, 288
SfaNI GCATC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 172
Sse9I AATT 1 cut(s) 7
StyD4I CCNGG 2 cut(s) 170, 298
TaqI TCGA 1 cut(s) 88
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 109, 161
Tru1I TTAA 2 cut(s) 75, 231
Tru9I TTAA 2 cut(s) 75, 231
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 132, 302
TspRI CASTG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.