Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1311 |
| Acc36I | ACCTGC | 1 cut(s) | 329 |
| AccI | GTMKAC | 4 cut(s) | 682, 790, 1203, 1554 |
| AciI | CCGC | 2 cut(s) | 152, 194 |
| AclWI | GGATC | 2 cut(s) | 204, 217 |
| AcsI | RAATTY | 1 cut(s) | 694 |
| AcvI | CACGTG | 1 cut(s) | 179 |
| AfaI | GTAC | 7 cut(s) | 238, 278, 306, 649, 706, 1254, 1606 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 161, 162, 333, 746 |
| AflIII | ACRYGT | 3 cut(s) | 367, 447, 1488 |
| AgeI | ACCGGT | 1 cut(s) | 1249 |
| AgsI | TTSAA | 6 cut(s) | 786, 806, 970, 1153, 1174, 1195 |
| AjnI | CCWGG | 2 cut(s) | 120, 293 |
| AluBI | AGCT | 5 cut(s) | 205, 729, 1045, 1093, 1177 |
| AluI | AGCT | 5 cut(s) | 205, 729, 1045, 1093, 1177 |
| Alw21I | GWGCWC | 3 cut(s) | 150, 226, 396 |
| Alw44I | GTGCAC | 1 cut(s) | 222 |
| AlwI | GGATC | 2 cut(s) | 204, 217 |
| AoxI | GGCC | 1 cut(s) | 296 |
| ApaLI | GTGCAC | 1 cut(s) | 222 |
| ApeKI | GCWGC | 5 cut(s) | 356, 953, 1042, 1380, 1433 |
| ApoI | RAATTY | 1 cut(s) | 694 |
| AseI | ATTAAT | 4 cut(s) | 1370, 1391, 1457, 1509 |
| AsiGI | ACCGGT | 1 cut(s) | 1249 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1606 |
| AsuC2I | CCSGG | 1 cut(s) | 137 |
| AsuHPI | GGTGA | 3 cut(s) | 179, 628, 1096 |
| AsuII | TTCGAA | 1 cut(s) | 553 |
| BaeGI | GKGCMC | 2 cut(s) | 168, 226 |
| BamHI | GGATCC | 1 cut(s) | 209 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1001, 1033 |
| BauI | CACGAG | 1 cut(s) | 331 |
| BbrPI | CACGTG | 1 cut(s) | 179 |
| BbsI | GAAGAC | 2 cut(s) | 933, 1575 |
| Bbv12I | GWGCWC | 3 cut(s) | 150, 226, 396 |
| BbvI | GCAGC | 5 cut(s) | 343, 940, 1054, 1392, 1445 |
| BccI | CCATC | 3 cut(s) | 43, 630, 982 |
| BceAI | ACGGC | 1 cut(s) | 532 |
| BciT130I | CCWGG | 2 cut(s) | 122, 295 |
| BclI | TGATCA | 1 cut(s) | 1086 |
| BcnI | CCSGG | 1 cut(s) | 137 |
| BfaI | CTAG | 2 cut(s) | 270, 843 |
| BfmI | CTRYAG | 2 cut(s) | 247, 679 |
| BfuAI | ACCTGC | 1 cut(s) | 329 |
| BisI | GCNGC | 5 cut(s) | 357, 954, 1043, 1381, 1434 |
| BlpI | GCTNAGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 5 cut(s) | 358, 955, 1044, 1382, 1435 |
| BmcAI | AGTACT | 1 cut(s) | 1606 |
| Bme1390I | CCNGG | 3 cut(s) | 122, 137, 295 |
| BmiI | GGNNCC | 3 cut(s) | 211, 257, 325 |
| BmrFI | CCNGG | 3 cut(s) | 122, 137, 295 |
| BmsI | GCATC | 2 cut(s) | 53, 1445 |
| BpiI | GAAGAC | 2 cut(s) | 933, 1575 |
| Bpu10I | CCTNAGC | 1 cut(s) | 390 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 201 |
| Bpu14I | TTCGAA | 1 cut(s) | 553 |
| BpuMI | CCSGG | 1 cut(s) | 137 |
| Bsa29I | ATCGAT | 1 cut(s) | 47 |
| BsaAI | YACGTR | 2 cut(s) | 179, 482 |
| BsaJI | CCNNGG | 3 cut(s) | 135, 293, 957 |
| BsaWI | WCCGGW | 1 cut(s) | 1249 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 161, 162, 333, 746 |
| Bse118I | RCCGGY | 1 cut(s) | 1249 |
| Bse3DI | GCAATG | 1 cut(s) | 1405 |
| BseBI | CCWGG | 2 cut(s) | 122, 295 |
| BseCI | ATCGAT | 1 cut(s) | 47 |
| BseDI | CCNNGG | 3 cut(s) | 135, 293, 957 |
| BseGI | GGATG | 3 cut(s) | 899, 997, 1584 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 161, 162, 333, 746 |
| BseMI | GCAATG | 1 cut(s) | 1405 |
| BseMII | CTCAG | 4 cut(s) | 215, 277, 381, 1478 |
| BseSI | GKGCMC | 2 cut(s) | 168, 226 |
| BseXI | GCAGC | 5 cut(s) | 343, 940, 1054, 1392, 1445 |
| BsgI | GTGCAG | 1 cut(s) | 1452 |
| Bsh1285I | CGRYCG | 1 cut(s) | 751 |
| BshFI | GGCC | 1 cut(s) | 298 |
| BshTI | ACCGGT | 1 cut(s) | 1249 |
| BshVI | ATCGAT | 1 cut(s) | 47 |
| BsiEI | CGRYCG | 1 cut(s) | 751 |
| BsiHKAI | GWGCWC | 3 cut(s) | 150, 226, 396 |
| BsiSI | CCGG | 4 cut(s) | 137, 353, 602, 1250 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 161, 162, 333, 746 |
| BsnI | GGCC | 1 cut(s) | 298 |
| Bsp119I | TTCGAA | 1 cut(s) | 553 |
| Bsp1286I | GDGCHC | 4 cut(s) | 150, 168, 226, 396 |
| Bsp143I | GATC | 3 cut(s) | 209, 742, 1086 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 201 |
| Bsp19I | CCATGG | 1 cut(s) | 957 |
| BspACI | CCGC | 2 cut(s) | 152, 194 |
| BspANI | GGCC | 1 cut(s) | 298 |
| BspCNI | CTCAG | 4 cut(s) | 214, 276, 382, 1477 |
| BspDI | ATCGAT | 1 cut(s) | 47 |
| BspLI | GGNNCC | 3 cut(s) | 211, 257, 325 |
| BspMI | ACCTGC | 1 cut(s) | 329 |
| BspPI | GGATC | 2 cut(s) | 204, 217 |
| BspT104I | TTCGAA | 1 cut(s) | 553 |
| BsrDI | GCAATG | 1 cut(s) | 1405 |
| BsrFI | RCCGGY | 1 cut(s) | 1249 |
| BssAI | RCCGGY | 1 cut(s) | 1249 |
| BssECI | CCNNGG | 3 cut(s) | 135, 293, 957 |
| BssMI | GATC | 3 cut(s) | 209, 742, 1086 |
| BssSI | CACGAG | 1 cut(s) | 331 |
| BssT1I | CCWWGG | 1 cut(s) | 957 |
| Bst2BI | CACGAG | 1 cut(s) | 331 |
| Bst2UI | CCWGG | 2 cut(s) | 122, 295 |
| Bst4CI | ACNGT | 3 cut(s) | 170, 228, 1415 |
| Bst6I | CTCTTC | 1 cut(s) | 1262 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1288 |
| BstBAI | YACGTR | 2 cut(s) | 179, 482 |
| BstBI | TTCGAA | 1 cut(s) | 553 |
| BstC8I | GCNNGC | 1 cut(s) | 198 |
| BstDEI | CTNAG | 5 cut(s) | 201, 263, 390, 1292, 1464 |
| BstDSI | CCRYGG | 1 cut(s) | 957 |
| BstEII | GGTNACC | 1 cut(s) | 634 |
| BstF5I | GGATG | 3 cut(s) | 899, 997, 1584 |
| BstKTI | GATC | 3 cut(s) | 212, 745, 1089 |
| BstMBI | GATC | 3 cut(s) | 209, 742, 1086 |
| BstMCI | CGRYCG | 1 cut(s) | 751 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 105, 126, 202, 465, 602, 735, 1279, 1288 |
| BstNI | CCWGG | 2 cut(s) | 122, 295 |
| BstNSI | RCATGY | 3 cut(s) | 371, 451, 1492 |
| BstPI | GGTNACC | 1 cut(s) | 634 |
| BstSCI | CCNGG | 3 cut(s) | 120, 135, 293 |
| BstSFI | CTRYAG | 2 cut(s) | 247, 679 |
| BstSLI | GKGCMC | 2 cut(s) | 168, 226 |
| BstSNI | TACGTA | 1 cut(s) | 482 |
| BstV1I | GCAGC | 5 cut(s) | 343, 940, 1054, 1392, 1445 |
| BstV2I | GAAGAC | 2 cut(s) | 933, 1575 |
| BstX2I | RGATCY | 1 cut(s) | 209 |
| BstYI | RGATCY | 1 cut(s) | 209 |
| Bsu15I | ATCGAT | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 298 |
| BsuTUI | ATCGAT | 1 cut(s) | 47 |
| BtgI | CCRYGG | 1 cut(s) | 957 |
| BtsCI | GGATG | 3 cut(s) | 899, 997, 1584 |
| BtsIMutI | CAGTG | 1 cut(s) | 351 |
| BveI | ACCTGC | 1 cut(s) | 329 |
| Cac8I | GCNNGC | 1 cut(s) | 198 |
| Cfr10I | RCCGGY | 1 cut(s) | 1249 |
| ClaI | ATCGAT | 1 cut(s) | 47 |
| CseI | GACGC | 1 cut(s) | 114 |
| Csp6I | GTAC | 7 cut(s) | 237, 277, 305, 648, 705, 1253, 1605 |
| CspAI | ACCGGT | 1 cut(s) | 1249 |
| CviQI | GTAC | 7 cut(s) | 237, 277, 305, 648, 705, 1253, 1605 |
| DdeI | CTNAG | 5 cut(s) | 201, 263, 390, 1292, 1464 |
| DpnI | GATC | 3 cut(s) | 211, 744, 1088 |
| DpnII | GATC | 3 cut(s) | 209, 742, 1086 |
| DraI | TTTAAA | 1 cut(s) | 1236 |
| Eam1104I | CTCTTC | 1 cut(s) | 1262 |
| EarI | CTCTTC | 1 cut(s) | 1262 |
| Eco105I | TACGTA | 1 cut(s) | 482 |
| Eco130I | CCWWGG | 1 cut(s) | 957 |
| Eco147I | AGGCCT | 1 cut(s) | 298 |
| Eco72I | CACGTG | 1 cut(s) | 179 |
| Eco91I | GGTNACC | 1 cut(s) | 634 |
| EcoO65I | GGTNACC | 1 cut(s) | 634 |
| EcoRII | CCWGG | 2 cut(s) | 120, 293 |
| EcoT14I | CCWWGG | 1 cut(s) | 957 |
| EcoT22I | ATGCAT | 2 cut(s) | 46, 90 |
| ErhI | CCWWGG | 1 cut(s) | 957 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 623, 655 |
| FauI | CCCGC | 2 cut(s) | 159, 201 |
| FauNDI | CATATG | 1 cut(s) | 281 |
| FbaI | TGATCA | 1 cut(s) | 1086 |
| FblI | GTMKAC | 4 cut(s) | 682, 790, 1203, 1554 |
| Fnu4HI | GCNGC | 5 cut(s) | 357, 954, 1043, 1381, 1434 |
| FokI | GGATG | 3 cut(s) | 906, 1004, 1591 |
| Fsp4HI | GCNGC | 5 cut(s) | 357, 954, 1043, 1381, 1434 |
| FspBI | CTAG | 2 cut(s) | 270, 843 |
| GluI | GCNGC | 5 cut(s) | 357, 954, 1043, 1381, 1434 |
| HaeIII | GGCC | 1 cut(s) | 298 |
| HapII | CCGG | 4 cut(s) | 137, 353, 602, 1250 |
| HgaI | GACGC | 1 cut(s) | 114 |
| HincII | GTYRAC | 1 cut(s) | 1555 |
| HindII | GTYRAC | 1 cut(s) | 1555 |
| HindIII | AAGCTT | 1 cut(s) | 1175 |
| HinfI | GANTC | 6 cut(s) | 261, 329, 349, 684, 970, 1462 |
| HpaII | CCGG | 4 cut(s) | 137, 353, 602, 1250 |
| HphI | GGTGA | 3 cut(s) | 179, 628, 1096 |
| Hpy166II | GTNNAC | 8 cut(s) | 104, 187, 224, 648, 683, 791, 1204, 1555 |
| Hpy188I | TCNGA | 6 cut(s) | 260, 328, 612, 693, 1447, 1601 |
| Hpy188III | TCNNGA | 1 cut(s) | 1123 |
| Hpy8I | GTNNAC | 8 cut(s) | 104, 187, 224, 648, 683, 791, 1204, 1555 |
| HpyAV | CCTTC | 3 cut(s) | 183, 649, 1003 |
| HpyCH4III | ACNGT | 3 cut(s) | 170, 228, 1415 |
| HpyCH4IV | ACGT | 3 cut(s) | 178, 440, 481 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 105, 126, 202, 465, 602, 735, 1279, 1288 |
| HpyF3I | CTNAG | 5 cut(s) | 201, 263, 390, 1292, 1464 |
| HpySE526I | ACGT | 3 cut(s) | 178, 440, 481 |
| Ksp22I | TGATCA | 1 cut(s) | 1086 |
| Kzo9I | GATC | 3 cut(s) | 209, 742, 1086 |
| LmnI | GCTCC | 1 cut(s) | 153 |
| Lsp1109I | GCAGC | 5 cut(s) | 343, 940, 1054, 1392, 1445 |
| LweI | GCATC | 2 cut(s) | 53, 1445 |
| MaeI | CTAG | 2 cut(s) | 270, 843 |
| MaeII | ACGT | 3 cut(s) | 178, 440, 481 |
| MaeIII | GTNAC | 5 cut(s) | 130, 346, 634, 759, 1016 |
| MalI | GATC | 3 cut(s) | 211, 744, 1088 |
| MboI | GATC | 3 cut(s) | 209, 742, 1086 |
| MboII | GAAGA | 3 cut(s) | 933, 1249, 1580 |
| MfeI | CAATTG | 1 cut(s) | 1573 |
| MflI | RGATCY | 1 cut(s) | 209 |
| MhlI | GDGCHC | 4 cut(s) | 150, 168, 226, 396 |
| MlyI | GAGTC | 5 cut(s) | 255, 323, 343, 678, 1456 |
| MmeI | TCCRAC | 2 cut(s) | 283, 351 |
| MnlI | CCTC | 5 cut(s) | 200, 493, 514, 762, 1068 |
| Mph1103I | ATGCAT | 2 cut(s) | 46, 90 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspI | CCGG | 4 cut(s) | 137, 353, 602, 1250 |
| MspR9I | CCNGG | 3 cut(s) | 122, 137, 295 |
| MunI | CAATTG | 1 cut(s) | 1573 |
| MvaI | CCWGG | 2 cut(s) | 122, 295 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 105, 126, 202, 465, 602, 735, 1279, 1288 |
| NciI | CCSGG | 1 cut(s) | 137 |
| NcoI | CCATGG | 1 cut(s) | 957 |
| NdeI | CATATG | 1 cut(s) | 281 |
| NdeII | GATC | 3 cut(s) | 209, 742, 1086 |
| NlaIV | GGNNCC | 3 cut(s) | 211, 257, 325 |
| NmuCI | GTSAC | 3 cut(s) | 346, 634, 759 |
| NsiI | ATGCAT | 2 cut(s) | 46, 90 |
| NspI | RCATGY | 3 cut(s) | 371, 451, 1492 |
| NspV | TTCGAA | 1 cut(s) | 553 |
| PceI | AGGCCT | 1 cut(s) | 298 |
| PciI | ACATGT | 3 cut(s) | 367, 447, 1488 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1606 |
| PfeI | GAWTC | 1 cut(s) | 970 |
| PinAI | ACCGGT | 1 cut(s) | 1249 |
| PkrI | GCNGC | 5 cut(s) | 358, 955, 1044, 1382, 1435 |
| PleI | GAGTC | 5 cut(s) | 255, 323, 343, 678, 1456 |
| PmaCI | CACGTG | 1 cut(s) | 179 |
| PmlI | CACGTG | 1 cut(s) | 179 |
| PpsI | GAGTC | 5 cut(s) | 255, 323, 343, 678, 1456 |
| Ppu21I | YACGTR | 2 cut(s) | 179, 482 |
| PscI | ACATGT | 3 cut(s) | 367, 447, 1488 |
| PshBI | ATTAAT | 4 cut(s) | 1370, 1391, 1457, 1509 |
| PsiI | TTATAA | 1 cut(s) | 1311 |
| Psp6I | CCWGG | 2 cut(s) | 120, 293 |
| PspCI | CACGTG | 1 cut(s) | 179 |
| PspEI | GGTNACC | 1 cut(s) | 634 |
| PspGI | CCWGG | 2 cut(s) | 120, 293 |
| PspN4I | GGNNCC | 3 cut(s) | 211, 257, 325 |
| PsuI | RGATCY | 1 cut(s) | 209 |
| RsaI | GTAC | 7 cut(s) | 238, 278, 306, 649, 706, 1254, 1606 |
| RsaNI | GTAC | 7 cut(s) | 237, 277, 305, 648, 705, 1253, 1605 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SalI | GTCGAC | 1 cut(s) | 1553 |
| SatI | GCNGC | 5 cut(s) | 357, 954, 1043, 1381, 1434 |
| Sau3AI | GATC | 3 cut(s) | 209, 742, 1086 |
| ScaI | AGTACT | 1 cut(s) | 1606 |
| SchI | GAGTC | 5 cut(s) | 255, 323, 343, 678, 1456 |
| ScrFI | CCNGG | 3 cut(s) | 122, 137, 295 |
| SduI | GDGCHC | 4 cut(s) | 150, 168, 226, 396 |
| SfaNI | GCATC | 2 cut(s) | 53, 1445 |
| SfcI | CTRYAG | 2 cut(s) | 247, 679 |
| SfuI | TTCGAA | 1 cut(s) | 553 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| SnaBI | TACGTA | 1 cut(s) | 482 |
| SseBI | AGGCCT | 1 cut(s) | 298 |
| SsiI | CCGC | 2 cut(s) | 152, 194 |
| SspI | AATATT | 1 cut(s) | 877 |
| SspMI | CTAG | 2 cut(s) | 270, 843 |
| StuI | AGGCCT | 1 cut(s) | 298 |
| StyD4I | CCNGG | 3 cut(s) | 120, 135, 293 |
| StyI | CCWWGG | 1 cut(s) | 957 |
| TaaI | ACNGT | 3 cut(s) | 170, 228, 1415 |
| TaiI | ACGT | 3 cut(s) | 181, 443, 484 |
| TaqI | TCGA | 3 cut(s) | 47, 553, 1554 |
| TaqII | GACCGA | 1 cut(s) | 737 |
| TatI | WGTACW | 2 cut(s) | 647, 1604 |
| TfiI | GAWTC | 1 cut(s) | 970 |
| TscAI | CASTG | 1 cut(s) | 351 |
| TseFI | GTSAC | 3 cut(s) | 346, 634, 759 |
| TseI | GCWGC | 5 cut(s) | 356, 953, 1042, 1380, 1433 |
| Tsp45I | GTSAC | 3 cut(s) | 346, 634, 759 |
| TspDTI | ATGAA | 6 cut(s) | 29, 533, 1022, 1152, 1416, 1581 |
| TspRI | CASTG | 1 cut(s) | 351 |
| VneI | GTGCAC | 1 cut(s) | 222 |
| VspI | ATTAAT | 4 cut(s) | 1370, 1391, 1457, 1509 |
| XapI | RAATTY | 1 cut(s) | 694 |
| XceI | RCATGY | 3 cut(s) | 371, 451, 1492 |
| XmiI | GTMKAC | 4 cut(s) | 682, 790, 1203, 1554 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1606 |
| XspI | CTAG | 2 cut(s) | 270, 843 |
| ZrmI | AGTACT | 1 cut(s) | 1606 |
| Zsp2I | ATGCAT | 2 cut(s) | 46, 90 |