Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Reverse (-)

35946238 .. 35947552

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43023.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCGTACAATCTTGCAAGGTTTTGCGACCAGAAAAACAGCAGCAGCGGCGGTCACGTCAACGCAAAAGAGAAGAGAATCATGGAAGAAGAAAGCTTTAAGCGTAAGTCTCTCTACTTATGTTCTGATGAGGACACTAACAACTATATTTATGTTATTCAATCCATCAGATTAAGCCATTTGTTGGCACCACCGGTACATAGCGGCGATGATATGAAATTACAAAGAGTTGCTTATAGAAGTGGACCATATACGGTTGTTCCCCGACATATGAGCACTGGTGTCGTCGGCTCCAAAATTATTTTCTTTGGTGGTTTGGTTCCCCCGGAGGATAAAGACATTGCTTCTCATACTTTACAAAATTCAGCAAGTAAAGAAGTTTGTGTGTTTGAGACAAATCCAAGCATCGATCCAAACCCGAAATTACAGCCTTCGCAAGTTTTCAAGAATAATATAGGTGAACCTGTTTTAGTGGAGGTGGACAACAAACTTTATCGTTTCGGCTGTCGGTGGAACTGTGATTCATTCGAGGTATTAGAACCAAAACATGATGACTGGTTGCCTCTGGATGTGCCTCCTCGAAGATTGTGGTTCACTCATGCAATTGCAGGCACCAAAATTTTACTTTGGGGCAGAAATCAGACTGGAGTGTACATGTTTGACGTGATCTACCCGGAAAAAGGATGGACAGAATTGGACCCTTATTTGGGGAGATACATTCACTCTATTGATGGTGATCATCAACTATTTGTCAAGTTGAAGTCTGGTCATGATGATGGTGAGGGTTTCCTAATGTTCTCTACTAACCTGAAACAACCTCATATAGTACTAGTCTCCCACATGTCGCATACATGTGATTCCTTGAAACCTATGCAACCTCTACAGCTGCAGTTGCCTCCAGACAGCCCTCCAAATTCTAAATCCCACTATTCGAGCCGATGTAAGTTTTTCCATCTGGGGGGTCAAAAGGTCGGCATTGTTTTCTCTTGTGACCGCTTACGAAATCATTATAAAGAAATTTATGATTATAATCCTTATAATGTTACCCCTGGTGATAGTGAAAAGGCGAGAGTTTTTGTTATAATCTTTGAATACGAATTTGCCAAGGAATCTATGGACATCAAATACAGTGTGTTTAGTTCTCGCTGCCTTGAATACTCTACAAAGCATCCTGAGGAAGAATCTTTTTCTGATAGTTCACAATTGATAGGTGCCTATGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

409

Amino Acids

46.71

Weight (kDa)

6.38

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1011, 1029, 1038, 1082
AccB1I	GGYRCC	3 cut(s)	187, 611, 1211
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	4 cut(s)	48, 51, 204, 994
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	5 cut(s)	361, 618, 913, 1017, 1097
AfaI	GTAC	4 cut(s)	8, 198, 653, 828
AfiI	CCNNNNNNNGG	5 cut(s)	184, 680, 706, 707, 958
AflIII	ACRYGT	3 cut(s)	654, 840, 851
AgeI	ACCGGT	1 cut(s)	193
AgsI	TTSAA	6 cut(s)	161, 445, 760, 865, 1091, 1154
AhlI	ACTAGT	1 cut(s)	829
AjiI	CACGTC	2 cut(s)	58, 664
AjnI	CCWGG	1 cut(s)	1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	96, 886
AluI	AGCT	2 cut(s)	96, 886
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	3 cut(s)	114, 386, 838
AlwI	GGATC	1 cut(s)	404
ApeKI	GCWGC	4 cut(s)	42, 45, 886, 1146
ApoI	RAATTY	5 cut(s)	361, 618, 913, 1017, 1097
AsiGI	ACCGGT	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	245, 697
AsuC2I	CCSGG	2 cut(s)	326, 674
AsuHPI	GGTGA	4 cut(s)	470, 746, 791, 1064
AvaII	GGWCC	2 cut(s)	245, 697
AxyI	CCTNAGG	1 cut(s)	1173
BanI	GGYRCC	3 cut(s)	187, 611, 1211
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	54, 57, 873, 1133
BccI	CCATC	5 cut(s)	173, 678, 725, 770, 960
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	1050
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	2 cut(s)	326, 674
BcoDI	GTCTC	3 cut(s)	114, 386, 838
BcuI	ACTAGT	1 cut(s)	829
BfaI	CTAG	1 cut(s)	830
BfmI	CTRYAG	2 cut(s)	881, 887
BisI	GCNGC	6 cut(s)	43, 46, 49, 205, 887, 1147
BlsI	GCNGC	6 cut(s)	44, 47, 50, 206, 888, 1148
BmcAI	AGTACT	1 cut(s)	828
Bme1390I	CCNGG	3 cut(s)	326, 674, 1050
Bme18I	GGWCC	2 cut(s)	245, 697
BmgBI	CACGTC	2 cut(s)	58, 664
BmgT120I	GGNCC	2 cut(s)	245, 697
BmiI	GGNNCC	6 cut(s)	189, 292, 321, 613, 699, 1213
BmrFI	CCNGG	3 cut(s)	326, 674, 1050
BmsI	GCATC	2 cut(s)	414, 1177
BpmI	CTGGAG	2 cut(s)	666, 882
BpuMI	CCSGG	2 cut(s)	326, 674
Bsa29I	ATCGAT	1 cut(s)	408
BsaBI	GATNNNNATC	2 cut(s)	735, 1029
BsaJI	CCNNGG	3 cut(s)	324, 1048, 1104
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	5 cut(s)	184, 680, 706, 707, 958
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	283, 560, 649
Bse21I	CCTNAGG	1 cut(s)	1173
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	2 cut(s)	735, 1029
BseBI	CCWGG	1 cut(s)	1050
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	324, 1048, 1104
BseGI	GGATG	3 cut(s)	574, 689, 1168
BseJI	GATNNNNATC	2 cut(s)	735, 1029
BseLI	CCNNNNNNNGG	5 cut(s)	184, 680, 706, 707, 958
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	1164
BseNI	ACTGG	3 cut(s)	283, 560, 649
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	4 cut(s)	54, 57, 873, 1133
BshNI	GGYRCC	3 cut(s)	187, 611, 1211
BshTI	ACCGGT	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	194, 326, 674
BslI	CCNNNNNNNGG	5 cut(s)	184, 680, 706, 707, 958
BsmAI	GTCTC	3 cut(s)	114, 386, 838
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	3 cut(s)	409, 666, 736
BspACI	CCGC	4 cut(s)	48, 51, 204, 994
BspCNI	CTCAG	1 cut(s)	1165
BspDI	ATCGAT	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	6 cut(s)	189, 292, 321, 613, 699, 1213
BspMAI	CTGCAG	1 cut(s)	891
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	3 cut(s)	187, 611, 1211
BsrDI	GCAATG	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	193
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	3 cut(s)	283, 560, 649
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	324, 1048, 1104
BssMI	GATC	3 cut(s)	409, 666, 736
BssT1I	CCWWGG	1 cut(s)	1104
Bst2UI	CCWGG	1 cut(s)	1050
Bst4CI	ACNGT	3 cut(s)	256, 518, 1130
Bst6I	CTCTTC	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	1 cut(s)	1173
BstF5I	GGATG	3 cut(s)	574, 689, 1168
BstKTI	GATC	3 cut(s)	412, 669, 739
BstMAI	GTCTC	3 cut(s)	114, 386, 838
BstMBI	GATC	3 cut(s)	409, 666, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 892
BstNI	CCWGG	1 cut(s)	1050
BstNSI	RCATGY	3 cut(s)	658, 844, 855
BstSCI	CCNGG	3 cut(s)	324, 672, 1048
BstSFI	CTRYAG	2 cut(s)	881, 887
BstV1I	GCAGC	4 cut(s)	54, 57, 873, 1133
Bsu15I	ATCGAT	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	1173
BsuTUI	ATCGAT	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	222
BtrI	CACGTC	2 cut(s)	58, 664
BtsCI	GGATG	3 cut(s)	574, 689, 1168
BtsIMutI	CAGTG	2 cut(s)	276, 1135
Cac8I	GCNNGC	1 cut(s)	610
CciI	TCATGA	1 cut(s)	769
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	245, 697
ClaI	ATCGAT	1 cut(s)	408
Csp6I	GTAC	4 cut(s)	7, 197, 652, 827
CspAI	ACCGGT	1 cut(s)	193
CviAII	CATG	7 cut(s)	82, 548, 599, 655, 770, 841, 852
CviJI	RGCY	8 cut(s)	96, 177, 291, 430, 504, 886, 906, 936
CviKI_1	RGCY	8 cut(s)	96, 177, 291, 430, 504, 886, 906, 936
CviQI	GTAC	4 cut(s)	7, 197, 652, 827
DdeI	CTNAG	1 cut(s)	1173
DpnI	GATC	3 cut(s)	411, 668, 738
DpnII	GATC	3 cut(s)	409, 666, 736
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	1104
Eco47I	GGWCC	2 cut(s)	245, 697
Eco81I	CCTNAGG	1 cut(s)	1173
EcoRII	CCWGG	1 cut(s)	1048
EcoT14I	CCWWGG	1 cut(s)	1104
ErhI	CCWWGG	1 cut(s)	1104
FaeI	CATG	7 cut(s)	85, 551, 602, 658, 773, 844, 855
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FatI	CATG	7 cut(s)	81, 547, 598, 654, 769, 840, 851
FauNDI	CATATG	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	6 cut(s)	43, 46, 49, 205, 887, 1147
FokI	GGATG	3 cut(s)	581, 696, 1155
Fsp4HI	GCNGC	6 cut(s)	43, 46, 49, 205, 887, 1147
FspBI	CTAG	1 cut(s)	830
GluI	GCNGC	6 cut(s)	43, 46, 49, 205, 887, 1147
GsuI	CTGGAG	2 cut(s)	666, 882
HapII	CCGG	3 cut(s)	194, 326, 674
Hin1II	CATG	7 cut(s)	85, 551, 602, 658, 773, 844, 855
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	5 cut(s)	78, 521, 857, 1109, 1181
HpaII	CCGG	3 cut(s)	194, 326, 674
HphI	GGTGA	4 cut(s)	470, 746, 791, 1064
Hpy166II	GTNNAC	7 cut(s)	61, 245, 461, 481, 594, 652, 1199
Hpy188I	TCNGA	4 cut(s)	127, 170, 642, 1192
Hpy188III	TCNNGA	5 cut(s)	445, 566, 770, 899, 1172
Hpy8I	GTNNAC	7 cut(s)	61, 245, 461, 481, 594, 652, 1199
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	3 cut(s)	256, 518, 1130
HpyCH4IV	ACGT	2 cut(s)	57, 663
HpyCH4V	TGCA	5 cut(s)	17, 602, 608, 874, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 892
HpyF3I	CTNAG	1 cut(s)	1173
HpySE526I	ACGT	2 cut(s)	57, 663
Hsp92II	CATG	7 cut(s)	85, 551, 602, 658, 773, 844, 855
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	409, 666, 736
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	4 cut(s)	54, 57, 873, 1133
LweI	GCATC	2 cut(s)	414, 1177
MaeI	CTAG	1 cut(s)	830
MaeII	ACGT	2 cut(s)	57, 663
MaeIII	GTNAC	3 cut(s)	53, 989, 1042
MalI	GATC	3 cut(s)	411, 668, 738
MboI	GATC	3 cut(s)	409, 666, 736
MboII	GAAGA	5 cut(s)	85, 98, 101, 594, 1190
MfeI	CAATTG	2 cut(s)	603, 1202
MhlI	GDGCHC	1 cut(s)	278
MseI	TTAA	2 cut(s)	99, 173
MslI	CAYNNNNRTG	2 cut(s)	774, 852
MspA1I	CMGCKG	2 cut(s)	48, 886
MspI	CCGG	3 cut(s)	194, 326, 674
MspR9I	CCNGG	3 cut(s)	326, 674, 1050
MunI	CAATTG	2 cut(s)	603, 1202
MvaI	CCWGG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	2 cut(s)	48, 892
NciI	CCSGG	2 cut(s)	326, 674
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	3 cut(s)	409, 666, 736
NlaIII	CATG	7 cut(s)	85, 551, 602, 658, 773, 844, 855
NlaIV	GGNNCC	6 cut(s)	189, 292, 321, 613, 699, 1213
NmuCI	GTSAC	2 cut(s)	53, 989
NspI	RCATGY	3 cut(s)	658, 844, 855
PagI	TCATGA	1 cut(s)	769
PciI	ACATGT	3 cut(s)	654, 840, 851
PfeI	GAWTC	5 cut(s)	78, 521, 857, 1109, 1181
PflMI	CCANNNNNTGG	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	193
PkrI	GCNGC	6 cut(s)	44, 47, 50, 206, 888, 1148
PscI	ACATGT	3 cut(s)	654, 840, 851
PsiI	TTATAA	4 cut(s)	1011, 1029, 1038, 1082
Psp6I	CCWGG	1 cut(s)	1048
PspGI	CCWGG	1 cut(s)	1048
PspN4I	GGNNCC	6 cut(s)	189, 292, 321, 613, 699, 1213
PspPI	GGNCC	2 cut(s)	245, 697
PstI	CTGCAG	1 cut(s)	891
PvuII	CAGCTG	1 cut(s)	886
RsaI	GTAC	4 cut(s)	8, 198, 653, 828
RsaNI	GTAC	4 cut(s)	7, 197, 652, 827
RseI	CAYNNNNRTG	2 cut(s)	774, 852
SaqAI	TTAA	2 cut(s)	99, 173
SatI	GCNGC	6 cut(s)	43, 46, 49, 205, 887, 1147
Sau3AI	GATC	3 cut(s)	409, 666, 736
Sau96I	GGNCC	2 cut(s)	245, 697
ScaI	AGTACT	1 cut(s)	828
ScrFI	CCNGG	3 cut(s)	326, 674, 1050
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	2 cut(s)	414, 1177
SfcI	CTRYAG	2 cut(s)	881, 887
SinI	GGWCC	2 cut(s)	245, 697
SmiMI	CAYNNNNRTG	2 cut(s)	774, 852
SpeI	ACTAGT	1 cut(s)	829
SsiI	CCGC	4 cut(s)	48, 51, 204, 994
SspMI	CTAG	1 cut(s)	830
StyD4I	CCNGG	3 cut(s)	324, 672, 1048
StyI	CCWWGG	1 cut(s)	1104
TaaI	ACNGT	3 cut(s)	256, 518, 1130
TaiI	ACGT	2 cut(s)	60, 666
TaqI	TCGA	4 cut(s)	408, 528, 580, 932
TatI	WGTACW	2 cut(s)	651, 826
TauI	GCSGC	2 cut(s)	51, 207
TfiI	GAWTC	5 cut(s)	78, 521, 857, 1109, 1181
Tru1I	TTAA	2 cut(s)	99, 173
Tru9I	TTAA	2 cut(s)	99, 173
TscAI	CASTG	2 cut(s)	283, 1135
TseFI	GTSAC	2 cut(s)	53, 989
TseI	GCWGC	4 cut(s)	42, 45, 886, 1146
Tsp45I	GTSAC	2 cut(s)	53, 989
TspDTI	ATGAA	2 cut(s)	230, 513
TspRI	CASTG	2 cut(s)	283, 1135
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	2 cut(s)	245, 697
XapI	RAATTY	5 cut(s)	361, 618, 913, 1017, 1097
XceI	RCATGY	3 cut(s)	658, 844, 855
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1111
XspI	CTAG	1 cut(s)	830
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.