Rh2DG659400

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001042
Physical Location & Seq
Reverse (-)
88603538 .. 88607285
3748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG659400.1

Sequence Viewer

Length: 1098 bp
ATGGCGTGGTGTAGGCGGCAATGTTTTGCAGTGTTGGAAAGTTTTGCAACCAGAAAAGCAGCGGCCGCGGCGGCTACGACAACGTTAGCATGCAACTGGAAGAAGGAGACGAACAAAATTAGCATGTTTTCAGAATTCATCAGAAGATATTCTTCTACTTTAGCACCACTTAAGGCCGAGGAGAAAAAGAAGAAAGAAATCATGGAAGAAAAAAGCTTTAAGTATAAGTCTCTCTACTTGTGTTTCGAGGAGGACACTGACGACAATGTTCATGTTATTCAATCCATCAGATTAAGCCATTTGTTGGCACCACCAGTACATGGCGGCGATGATATGAAATTACAGAGAGTTGCTTATAGATGTGGACCGAAAACGGTTGTTCCCGCTGATATGAGCACTGCTGTCGTCGGTTCCAAAATTATTTTCTCCGGTGGTAAGGTTGAACCTGAGGAAAGAGACACTACTTCTCATATTGAACAATATTCACTAAGTAAAGAAGTTAGTGTGTTTGAGACAGATCCAAGCATAGATCCAAATCCGAGATTGCAGCCCTCCCAAGTTTTCAAGATTAGTACACCTGAACCTGTTCTAGTAGAGGTGGACGACAAACTTTATCGTTTCGGTGGTCGATGTGACTGTGAGTCATTCGAGGTATTTGAACCAATACAGGATGCCTGGTTGCCTTTGGATGTGCCTCCTCGAAAGTATCCCTACGGCTTCACTCATGCAATTGCAGGTACCAAAATCCTACTATGGGGCAGAAATCAGACCGGAGTGTACATGTTTGACGTGACCCATCCGGAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGAAGCTATATTCCCTCTATTGATGGTTATGATCAACTATTTGTCAAGTTGAAGTTTCGTCCTGGTGATGGTGAGGGTTTCCTAATGTTCTCCATTAATTTGGAACAACCTCATACGAGTGAGGAGCAAATTGTGCCCCGGATATGGGACTGCACTTTGGATACGTTACCCACTTCTACAACATCTCATATATCTGAAGTGGGCAAAAATTTTGAAGGTATTTCATCTCAGGTTGATGACACTGCCTTTTTGGCAGGAAAGTAG

Protein Analysis

365

Amino Acids

41.15

Weight (kDa)

5.42

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 725
Acc65I GGTACC 1 cut(s) 737
AccB1I GGYRCC 2 cut(s) 307, 737
AccB7I CCANNNNNTGG 2 cut(s) 304, 320
AccII CGCG 1 cut(s) 68
AccIII TCCGGA 1 cut(s) 799
AciI CCGC 7 cut(s) 16, 62, 66, 68, 71, 324, 384
AclI AACGTT 1 cut(s) 83
AclWI GGATC 2 cut(s) 512, 524
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 2 cut(s) 134, 1042
AcuI CTGAAG 1 cut(s) 1050
AfaI GTAC 4 cut(s) 318, 574, 739, 779
AfiI CCNNNNNNNGG 9 cut(s) 304, 320, 754, 806, 832, 833, 902, 978, 979
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 7 cut(s) 281, 443, 476, 565, 659, 886, 1049
AhdI GACNNNNNGTC 1 cut(s) 640
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 2 cut(s) 674, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 2 cut(s) 216, 840
AluI AGCT 2 cut(s) 216, 840
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 4 cut(s) 101, 234, 450, 506
AlwI GGATC 2 cut(s) 512, 524
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 2 cut(s) 63, 174
ApeKI GCWGC 2 cut(s) 59, 547
ApoI RAATTY 2 cut(s) 134, 1042
AseI ATTAAT 1 cut(s) 930
Asp700I GAANNNNTTC 2 cut(s) 148, 585
Asp718I GGTACC 1 cut(s) 737
AspS9I GGNCC 2 cut(s) 365, 823
AsuC2I CCSGG 1 cut(s) 973
AsuHPI GGTGA 2 cut(s) 911, 917
AvaII GGWCC 2 cut(s) 365, 823
AxyI CCTNAGG 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 972
BanI GGYRCC 2 cut(s) 307, 737
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 71, 559
BccI CCATC 5 cut(s) 293, 804, 804, 851, 896
BceAI ACGGC 1 cut(s) 730
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 2 cut(s) 676, 897
BciVI GTATCC 2 cut(s) 717, 988
BclI TGATCA 1 cut(s) 865
BcnI CCSGG 1 cut(s) 973
BcoDI GTCTC 4 cut(s) 101, 234, 450, 506
BfaI CTAG 1 cut(s) 590
BfrI CTTAAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 725
BfuI GTATCC 2 cut(s) 717, 988
BglI GCCNNNNNGGC 2 cut(s) 71, 1085
BisI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 548
BlsI GCNGC 8 cut(s) 18, 61, 64, 67, 70, 73, 326, 549
Bme1390I CCNGG 3 cut(s) 676, 897, 973
Bme18I GGWCC 2 cut(s) 365, 823
BmeRI GACNNNNNGTC 1 cut(s) 640
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 365, 823
BmiI GGNNCC 4 cut(s) 309, 412, 739, 825
BmrFI CCNGG 3 cut(s) 676, 897, 973
BmsI GCATC 1 cut(s) 661
BpuMI CCSGG 1 cut(s) 973
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 66, 177, 971
BsaWI WCCGGW 3 cut(s) 428, 770, 799
Bsc4I CCNNNNNNNGG 9 cut(s) 304, 320, 754, 806, 832, 833, 902, 978, 979
Bse1I ACTGG 2 cut(s) 101, 314
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 2 cut(s) 676, 897
BseDI CCNNGG 3 cut(s) 66, 177, 971
BseGI GGATG 4 cut(s) 676, 694, 796, 815
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 9 cut(s) 304, 320, 754, 806, 832, 833, 902, 978, 979
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 438, 1076
BseNI ACTGG 2 cut(s) 101, 314
BseRI GAGGAG 4 cut(s) 194, 263, 687, 971
BseSI GKGCMC 1 cut(s) 972
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 71, 559
BsgI GTGCAG 1 cut(s) 970
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 65, 176
BshNI GGYRCC 2 cut(s) 307, 737
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 4 cut(s) 429, 771, 800, 973
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 9 cut(s) 304, 320, 754, 806, 832, 833, 902, 978, 979
BsmAI GTCTC 4 cut(s) 101, 234, 450, 506
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 995
BsnI GGCC 2 cut(s) 65, 176
Bsp1286I GDGCHC 2 cut(s) 398, 972
Bsp13I TCCGGA 1 cut(s) 799
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 3 cut(s) 517, 529, 865
BspACI CCGC 7 cut(s) 16, 62, 66, 68, 71, 324, 384
BspANI GGCC 2 cut(s) 65, 176
BspCNI CTCAG 2 cut(s) 439, 1075
BspEI TCCGGA 1 cut(s) 799
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 4 cut(s) 309, 412, 739, 825
BspMI ACCTGC 1 cut(s) 725
BspPI GGATC 2 cut(s) 512, 524
BspT107I GGYRCC 2 cut(s) 307, 737
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 2 cut(s) 101, 314
BssECI CCNNGG 3 cut(s) 66, 177, 971
BssMI GATC 3 cut(s) 517, 529, 865
Bst2UI CCWGG 2 cut(s) 676, 897
Bst4CI ACNGT 2 cut(s) 376, 638
BstAFI CTTAAG 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 967
BstAUI TGTACA 1 cut(s) 777
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 3 cut(s) 447, 488, 1062
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 4 cut(s) 676, 694, 796, 815
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 3 cut(s) 520, 532, 868
BstMAI GTCTC 4 cut(s) 101, 234, 450, 506
BstMBI GATC 3 cut(s) 517, 529, 865
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 5 cut(s) 65, 68, 71, 967, 1085
BstNI CCWGG 2 cut(s) 676, 897
BstNSI RCATGY 3 cut(s) 93, 127, 784
BstSCI CCNGG 3 cut(s) 674, 895, 971
BstSLI GKGCMC 1 cut(s) 972
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 71, 559
BstX2I RGATCY 2 cut(s) 517, 529
BstXI CCANNNNNNTGG 1 cut(s) 934
BstYI RGATCY 2 cut(s) 517, 529
BstZI CGGCCG 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 2 cut(s) 717, 988
BsuRI GGCC 2 cut(s) 65, 176
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 4 cut(s) 676, 694, 796, 815
BtsI GCAGTG 3 cut(s) 36, 396, 1074
BtsIMutI CAGTG 4 cut(s) 36, 255, 396, 1074
BveI ACCTGC 1 cut(s) 725
Cac8I GCNNGC 1 cut(s) 91
CciNI GCGGCCGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 365, 823
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 4 cut(s) 317, 573, 738, 778
CviAII CATG 7 cut(s) 90, 124, 202, 272, 320, 725, 781
CviJI RGCY 8 cut(s) 65, 74, 176, 216, 297, 550, 717, 840
CviKI_1 RGCY 8 cut(s) 65, 74, 176, 216, 297, 550, 717, 840
CviQI GTAC 4 cut(s) 317, 573, 738, 778
DdeI CTNAG 3 cut(s) 447, 488, 1062
DpnI GATC 3 cut(s) 519, 531, 867
DpnII GATC 3 cut(s) 517, 529, 865
DriI GACNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 640
EclXI CGGCCG 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 365, 823
Eco52I CGGCCG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 1050
Eco81I CCTNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 674, 895
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 7 cut(s) 93, 127, 205, 275, 323, 728, 784
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FaqI GGGAC 1 cut(s) 995
FatI CATG 7 cut(s) 89, 123, 201, 271, 319, 724, 780
FauI CCCGC 1 cut(s) 391
FbaI TGATCA 1 cut(s) 865
Fnu4HI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 548
FokI GGATG 4 cut(s) 683, 701, 783, 822
Fsp4HI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 548
FspBI CTAG 1 cut(s) 590
GluI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 548
HaeIII GGCC 2 cut(s) 65, 176
HapII CCGG 4 cut(s) 429, 771, 800, 973
Hin1II CATG 7 cut(s) 93, 127, 205, 275, 323, 728, 784
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 641
HpaII CCGG 4 cut(s) 429, 771, 800, 973
HphI GGTGA 2 cut(s) 911, 917
Hpy166II GTNNAC 4 cut(s) 365, 575, 601, 778
Hpy188I TCNGA 6 cut(s) 133, 143, 290, 540, 768, 1030
Hpy188III TCNNGA 2 cut(s) 565, 800
Hpy8I GTNNAC 4 cut(s) 365, 575, 601, 778
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 97, 1043
HpyCH4III ACNGT 2 cut(s) 376, 638
HpyCH4IV ACGT 3 cut(s) 83, 789, 998
HpyCH4V TGCA 7 cut(s) 29, 47, 93, 547, 728, 734, 987
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 68, 71, 967, 1085
HpyF3I CTNAG 3 cut(s) 447, 488, 1062
HpySE526I ACGT 3 cut(s) 83, 789, 998
Hsp92II CATG 7 cut(s) 93, 127, 205, 275, 323, 728, 784
Kpn2I TCCGGA 1 cut(s) 799
KpnI GGTACC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 865
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 3 cut(s) 517, 529, 865
LmnI GCTCC 1 cut(s) 958
Lsp1109I GCAGC 2 cut(s) 71, 559
LweI GCATC 1 cut(s) 661
MaeI CTAG 1 cut(s) 590
MaeII ACGT 3 cut(s) 83, 789, 998
MaeIII GTNAC 3 cut(s) 632, 790, 999
MalI GATC 3 cut(s) 519, 531, 867
MboI GATC 3 cut(s) 517, 529, 865
MboII GAAGA 5 cut(s) 112, 144, 156, 202, 218
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 2 cut(s) 517, 529
MhlI GDGCHC 2 cut(s) 398, 972
MluCI AATT 9 cut(s) 117, 134, 338, 417, 729, 818, 931, 963, 1042
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 15
MroI TCCGGA 1 cut(s) 799
MroXI GAANNNNTTC 2 cut(s) 148, 585
MseI TTAA 4 cut(s) 171, 219, 293, 930
MslI CAYNNNNRTG 1 cut(s) 951
MspA1I CMGCKG 3 cut(s) 62, 68, 386
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 4 cut(s) 429, 771, 800, 973
MspR9I CCNGG 3 cut(s) 676, 897, 973
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 2 cut(s) 676, 897
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 5 cut(s) 65, 68, 71, 967, 1085
NciI CCSGG 1 cut(s) 973
NdeII GATC 3 cut(s) 517, 529, 865
NlaIII CATG 7 cut(s) 93, 127, 205, 275, 323, 728, 784
NlaIV GGNNCC 4 cut(s) 309, 412, 739, 825
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 632, 790
NotI GCGGCCGC 1 cut(s) 63
NspI RCATGY 3 cut(s) 93, 127, 784
PaeI GCATGC 1 cut(s) 93
PciI ACATGT 1 cut(s) 780
PdmI GAANNNNTTC 2 cut(s) 148, 585
PflMI CCANNNNNTGG 2 cut(s) 304, 320
PkrI GCNGC 8 cut(s) 18, 61, 64, 67, 70, 73, 326, 549
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PscI ACATGT 1 cut(s) 780
PshBI ATTAAT 1 cut(s) 930
Psp1406I AACGTT 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 674, 895
PspGI CCWGG 2 cut(s) 674, 895
PspN4I GGNNCC 4 cut(s) 309, 412, 739, 825
PspPI GGNCC 2 cut(s) 365, 823
PsuI RGATCY 2 cut(s) 517, 529
RsaI GTAC 4 cut(s) 318, 574, 739, 779
RsaNI GTAC 4 cut(s) 317, 573, 738, 778
RseI CAYNNNNRTG 1 cut(s) 951
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 4 cut(s) 171, 219, 293, 930
SatI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 548
Sau3AI GATC 3 cut(s) 517, 529, 865
Sau96I GGNCC 2 cut(s) 365, 823
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 676, 897, 973
SduI GDGCHC 2 cut(s) 398, 972
SfaNI GCATC 1 cut(s) 661
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 2 cut(s) 365, 823
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SphI GCATGC 1 cut(s) 93
Sse9I AATT 9 cut(s) 117, 134, 338, 417, 729, 818, 931, 963, 1042
SsiI CCGC 7 cut(s) 16, 62, 66, 68, 71, 324, 384
SspI AATATT 1 cut(s) 482
SspMI CTAG 1 cut(s) 590
StyD4I CCNGG 3 cut(s) 674, 895, 971
TaaI ACNGT 2 cut(s) 376, 638
TaiI ACGT 3 cut(s) 86, 792, 1001
TaqI TCGA 4 cut(s) 246, 628, 648, 700
TaqII GACCGA 1 cut(s) 382
TasI AATT 9 cut(s) 117, 134, 338, 417, 729, 818, 931, 963, 1042
TatI WGTACW 3 cut(s) 316, 572, 777
TauI GCSGC 6 cut(s) 19, 65, 68, 71, 74, 327
Tru1I TTAA 4 cut(s) 171, 219, 293, 930
Tru9I TTAA 4 cut(s) 171, 219, 293, 930
TscAI CASTG 4 cut(s) 36, 262, 403, 1081
TseFI GTSAC 2 cut(s) 632, 790
TseI GCWGC 2 cut(s) 59, 547
Tsp45I GTSAC 2 cut(s) 632, 790
TspDTI ATGAA 4 cut(s) 127, 260, 350, 1047
TspRI CASTG 4 cut(s) 36, 262, 403, 1081
Van91I CCANNNNNTGG 2 cut(s) 304, 320
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 365, 823
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 2 cut(s) 134, 1042
XceI RCATGY 3 cut(s) 93, 127, 784
XmnI GAANNNNTTC 2 cut(s) 148, 585
XspI CTAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.