Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Reverse (-)

3033983 .. 3034432

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAACCTCTGCAGCTGCCAGAATGGCCCCCAAAATTTCATAGACCAAGTCGATGTCTGTTTTTTCACCTTGGAGGGCAAAAAGTCGGCCTTGTTTTATCCCGTGATACATTACGTGATTACTATTATGATCATTATGAATTCCCTTCTGATTATGATGACGATGATAATGAAGACAACGAAGATGATGATGAAGACCACAAAGACGATGGCCATAATAATGATAATCATGACGCCTCTGATAATGTTAATTATGATGGCCTTGAGGATAATGACAAGGTGAGAGTTCTTGTCATAATCTCTGAATACGAAATTGTTGAGCCATGGACATCAAATACAAGTTGCTTAGCACTCGCTGCCTTCAAGACTCTTCCAAGAATCTTGGAACGGTACTTCACACCTGATAGGTGCCTATGTGATGTAAACTTAACTATAAGTTTTGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

17.46

Weight (kDa)

4.28

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	35, 140
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	364
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AoxI	GGCC	4 cut(s)	26, 88, 211, 259
ApeKI	GCWGC	3 cut(s)	13, 16, 356
ApoI	RAATTY	2 cut(s)	35, 140
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	59, 292
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	180, 201
BbvI	GCAGC	3 cut(s)	3, 25, 343
BccI	CCATC	2 cut(s)	203, 251
BclI	TGATCA	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	3 cut(s)	14, 17, 357
BlpI	GCTNAGC	1 cut(s)	346
BlsI	GCNGC	3 cut(s)	15, 18, 358
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	6, 29, 410
BpiI	GAAGAC	2 cut(s)	180, 201
Bpu1102I	GCTNAGC	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	70, 323
BseDI	CCNNGG	2 cut(s)	70, 323
BseXI	GCAGC	3 cut(s)	3, 25, 343
BshFI	GGCC	4 cut(s)	28, 90, 213, 261
BshNI	GGYRCC	1 cut(s)	408
BsnI	GGCC	4 cut(s)	28, 90, 213, 261
Bsp143I	GATC	1 cut(s)	130
Bsp1720I	GCTNAGC	1 cut(s)	346
Bsp19I	CCATGG	1 cut(s)	323
BspANI	GGCC	4 cut(s)	28, 90, 213, 261
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	3 cut(s)	6, 29, 410
BspMAI	CTGCAG	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	70, 323
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	70, 323
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	346
BstDSI	CCRYGG	1 cut(s)	323
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 356
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	3, 25, 343
BstV2I	GAAGAC	2 cut(s)	180, 201
BsuRI	GGCC	4 cut(s)	28, 90, 213, 261
BtgI	CCRYGG	1 cut(s)	323
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	2 cut(s)	230, 324
CviJI	RGCY	6 cut(s)	16, 28, 90, 213, 261, 322
CviKI_1	RGCY	6 cut(s)	16, 28, 90, 213, 261, 322
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	70, 323
EcoRI	GAATTC	1 cut(s)	140
EcoT14I	CCWWGG	2 cut(s)	70, 323
ErhI	CCWWGG	2 cut(s)	70, 323
FaeI	CATG	2 cut(s)	233, 327
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	2 cut(s)	229, 323
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	14, 17, 357
Fsp4HI	GCNGC	3 cut(s)	14, 17, 357
GluI	GCNGC	3 cut(s)	14, 17, 357
HaeIII	GGCC	4 cut(s)	28, 90, 213, 261
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	233, 327
HinfI	GANTC	2 cut(s)	367, 378
HphI	GGTGA	2 cut(s)	59, 292
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	151, 241, 304
Hpy188III	TCNNGA	2 cut(s)	230, 364
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	156, 370
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 356
HpyF3I	CTNAG	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	115
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	233, 327
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	2 cut(s)	33, 414
Lsp1109I	GCAGC	3 cut(s)	3, 25, 343
MaeII	ACGT	1 cut(s)	115
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	185, 194, 206, 362
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	4 cut(s)	35, 140, 250, 312
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	4 cut(s)	18, 68, 247, 259
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	3 cut(s)	249, 428, 448
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	25, 356
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	233, 327
NlaIV	GGNNCC	3 cut(s)	6, 29, 410
PagI	TCATGA	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	378
PflFI	GACNNNGTC	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	15, 18, 358
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	6, 29, 410
PspPI	GGNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	249, 428, 448
SatI	GCNGC	3 cut(s)	14, 17, 357
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	361
SetI	ASST	7 cut(s)	10, 18, 72, 118, 282, 403, 410
SfcI	CTRYAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	35, 140, 250, 312
StyI	CCWWGG	2 cut(s)	70, 323
TaaI	ACNGT	1 cut(s)	390
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	35, 140, 250, 312
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	3 cut(s)	249, 428, 448
Tru9I	TTAA	3 cut(s)	249, 428, 448
TseI	GCWGC	3 cut(s)	13, 16, 356
TspDTI	ATGAA	4 cut(s)	29, 153, 186, 207
Tth111I	GACNNNGTC	1 cut(s)	48
XapI	RAATTY	2 cut(s)	35, 140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.