Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

57700503 .. 57701195

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGTGGTGTAGGCGGCAATGTTTTGCAATGTTGGGAAGTTTTGCAACTAGAAAAGTAGCGGCCGCTGCGGCTACGTCAACTTTAGCAAGCAACTGGAAGAAGGAGACGAAGAAAATTAGCATGTTTTCAGAATTCATCAGAAGATATTCTTCTACTTTAGCACCACTTAAGGTCAAGGAGAAAAAGAAGAAAGAAATCATGGAAGAAAAAAGCTTTAAGTATAAGTCTCTCTACTTGTGTTTCGAGGAGGACACTGACGACAATGGTCATGTTATTCAATCCATCAGATTAAGACATCTGTTTGCACCACCAGTAAATGGCGGTGATGATATGAAATTACAGAGAGTTGCTTATAAATGTGGATCGAAAACGGTTGTCCCCGTTGATATGAGCACTGGTGTCGTTGGCTCTAAAATTATTTTCTCCGGTGGTAAGGTTGAACCTGAGGAAAAAGACACTACTTCTCATATTCAACAATATTCACTAAGTAAAGAAGTTAGTGTGTTTGAGACAGATCCCAGCATAGATCCAAATCCGACATTGCAGCCCTCCCAAGTTTTCAAGATTAGTAGACCTGAACCTGTTCCAGTAGAGGTAGACGACAAACTTTATCGTTTCGGTGGTCGATGTGACTGTGAGTCATTCGAGGTATTTGAACCAAGAGACAGACTAGAGTACCCCCCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

26.1

Weight (kDa)

8.63

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccI	GTMKAC	2 cut(s)	574, 600
AciI	CCGC	5 cut(s)	16, 62, 66, 71, 324
AclWI	GGATC	3 cut(s)	373, 512, 524
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	281, 443, 476, 565, 659
AhdI	GACNNNNNGTC	1 cut(s)	640
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	4 cut(s)	101, 234, 506, 660
AlwI	GGATC	3 cut(s)	373, 512, 524
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	68, 547
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	2 cut(s)	148, 585
AsuHPI	GGTGA	1 cut(s)	338
AxyI	CCTNAGG	1 cut(s)	447
BaeI	ACNNNNGTAYC	1 cut(s)	662
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	2 cut(s)	55, 559
BccI	CCATC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BcoDI	GTCTC	4 cut(s)	101, 234, 506, 660
BfaI	CTAG	2 cut(s)	51, 674
BfrI	CTTAAG	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	17, 63, 66, 69, 72, 548
BlsI	GCNGC	6 cut(s)	18, 64, 67, 70, 73, 549
BmeRI	GACNNNNNGTC	1 cut(s)	640
BmrI	ACTGGG	1 cut(s)	680
BmuI	ACTGGG	1 cut(s)	680
BoxI	GACNNNNGTC	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	5 cut(s)	101, 314, 403, 590, 686
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	3 cut(s)	26, 36, 542
Bse8I	GATNNNNATC	1 cut(s)	534
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	3 cut(s)	26, 36, 542
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	5 cut(s)	101, 314, 403, 590, 686
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	55, 559
BseYI	CCCAGC	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	4 cut(s)	101, 234, 506, 660
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	365, 517, 529
BspACI	CCGC	5 cut(s)	16, 62, 66, 71, 324
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	439
BspPI	GGATC	3 cut(s)	373, 512, 524
BspTI	CTTAAG	1 cut(s)	170
BsrDI	GCAATG	3 cut(s)	26, 36, 542
BsrI	ACTGG	5 cut(s)	101, 314, 403, 590, 686
BssMI	GATC	3 cut(s)	365, 517, 529
Bst4CI	ACNGT	2 cut(s)	376, 638
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	447, 488
BstKTI	GATC	3 cut(s)	368, 520, 532
BstMAI	GTCTC	4 cut(s)	101, 234, 506, 660
BstMBI	GATC	3 cut(s)	365, 517, 529
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 71
BstNSI	RCATGY	1 cut(s)	127
BstPAI	GACNNNNGTC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	55, 559
BstX2I	RGATCY	2 cut(s)	517, 529
BstYI	RGATCY	2 cut(s)	517, 529
BstZI	CGGCCG	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	255, 396
Cac8I	GCNNGC	1 cut(s)	91
CciNI	GCGGCCGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	3 cut(s)	124, 202, 272
CviJI	RGCY	5 cut(s)	65, 74, 216, 411, 550
CviKI_1	RGCY	5 cut(s)	65, 74, 216, 411, 550
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	447, 488
DpnI	GATC	3 cut(s)	367, 519, 531
DpnII	GATC	3 cut(s)	365, 517, 529
DriI	GACNNNNNGTC	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	640
EclXI	CGGCCG	1 cut(s)	63
Eco52I	CGGCCG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	3 cut(s)	127, 205, 275
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	123, 201, 271
FblI	GTMKAC	2 cut(s)	574, 600
Fnu4HI	GCNGC	6 cut(s)	17, 63, 66, 69, 72, 548
Fsp4HI	GCNGC	6 cut(s)	17, 63, 66, 69, 72, 548
FspBI	CTAG	2 cut(s)	51, 674
GluI	GCNGC	6 cut(s)	17, 63, 66, 69, 72, 548
GsaI	CCCAGC	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	3 cut(s)	127, 205, 275
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	1 cut(s)	641
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	81, 575, 601
Hpy188I	TCNGA	4 cut(s)	133, 143, 290, 540
Hpy188III	TCNNGA	1 cut(s)	565
Hpy8I	GTNNAC	3 cut(s)	81, 575, 601
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	376, 638
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	4 cut(s)	29, 47, 308, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 71
HpyF3I	CTNAG	2 cut(s)	447, 488
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	127, 205, 275
Kzo9I	GATC	3 cut(s)	365, 517, 529
LpnPI	CCDG	9 cut(s)	82, 327, 384, 442, 459, 535, 591, 597, 603
Lsp1109I	GCAGC	2 cut(s)	55, 559
MaeI	CTAG	2 cut(s)	51, 674
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	3 cut(s)	367, 519, 531
MboI	GATC	3 cut(s)	365, 517, 529
MboII	GAAGA	6 cut(s)	112, 124, 144, 156, 202, 218
MflI	RGATCY	2 cut(s)	517, 529
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	4 cut(s)	117, 134, 338, 417
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	6 cut(s)	241, 244, 442, 562, 589, 643
MroXI	GAANNNNTTC	2 cut(s)	148, 585
MseI	TTAA	3 cut(s)	171, 219, 293
MspA1I	CMGCKG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	68, 71
NdeII	GATC	3 cut(s)	365, 517, 529
NlaIII	CATG	3 cut(s)	127, 205, 275
NmuCI	GTSAC	1 cut(s)	632
NotI	GCGGCCGC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	148, 585
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	6 cut(s)	18, 64, 67, 70, 73, 549
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
PshAI	GACNNNNGTC	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	517, 529
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
SaqAI	TTAA	3 cut(s)	171, 219, 293
SatI	GCNGC	6 cut(s)	17, 63, 66, 69, 72, 548
Sau3AI	GATC	3 cut(s)	365, 517, 529
SchI	GAGTC	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	9 cut(s)	80, 177, 218, 441, 448, 580, 586, 600, 654
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	117, 134, 338, 417
SsiI	CCGC	5 cut(s)	16, 62, 66, 71, 324
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	2 cut(s)	51, 674
TaaI	ACNGT	2 cut(s)	376, 638
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	4 cut(s)	246, 368, 628, 648
TasI	AATT	4 cut(s)	117, 134, 338, 417
TauI	GCSGC	4 cut(s)	19, 65, 68, 74
Tru1I	TTAA	3 cut(s)	171, 219, 293
Tru9I	TTAA	3 cut(s)	171, 219, 293
TscAI	CASTG	2 cut(s)	262, 403
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	2 cut(s)	68, 547
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	2 cut(s)	127, 350
TspRI	CASTG	2 cut(s)	262, 403
Van91I	CCANNNNNTGG	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	127
XmiI	GTMKAC	2 cut(s)	574, 600
XmnI	GAANNNNTTC	2 cut(s)	148, 585
XspI	CTAG	2 cut(s)	51, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.