Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

78804398 .. 78814223

Gene Structure 9826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG610600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCCCGAGATGATTTTAAGTAAAGAAGTTTGTGCGTTTGAGACAGATCCAAGCGTAGATCTGAACCCGACATTGCAGCCCTCCCAAGCATTTAAGACTAGTAGACCCGATCCCTTCCTAGTAGAGGTAGCCGGCAAACTATATTGTTTCGGTGGCCCATGTTACTCCGAGTCCTTCGAGGTATTTGACTTGACATATGAAAAATGGTTGCCTCTGGATGTGCCTCCTCAGAGATATCCCTACAGGGACATCTGTCATGCAATTTTAGGAAACAAAATGTTACTCTGGGTAAAAAATCAGACCGGAGTATTCGGGTTTGACGTCACTCAACCTGAAAAAGGATGGACAGAGTTGGACTCTTGTTTGGGAAGCTGCATTCCCAATTTTAATAGTTATGGTCAACTATTTGTCAAGTTGAAGTCTCATCGTGGTGATGGTTTTCTAATGTTCTCCTGTAATTTAGAACAACCTCAGACTGTTAGAGTCTTTCAAATTTCACATGAATGTGATTCTATGAAACCTATGGAACCTCTGCAGCTGCCAAAATTGCCTCATCAATTTCCTGTACCAACACGATGTCAGTTTTTTCATCTAGAAGATAATAAAGTCGGTCTTGTTTTCTTCCGTGACCGTCGTGAGTATTTTTATGAGGATTATGATTATTTTTCTCCTGGTGATGATGATGACGACGATGATGATGAGGACGATGTGAACGAGGAAGAGGAGGGCGAGGAAGAGGAGGGCGAGGAAGAGGAGGAGGAGGAGGATGTTAGCAGGGTGAGAACTCTTGTCGTAATATTCGAATACAAAATTGCGGAAAAATCCATGGACATCAAGTACAAGCTGCTCACCACTCGCTGCCTGGAATACTCTACCCACCCTCCTGAAGAAGATAAAATTTTGAAGGATGATTGGGATGTCATCGCATATAGGGGGATCCCTGAAGATGTCAGTGGGGGAAATGTAGTATCCTACGAAGCTATCACGCTTAAAGTGTACTTTCATTTGACGGGATGGAATTGGATATGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

40.1

Weight (kDa)

4.39

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	103
AciI	CCGC	1 cut(s)	815
AclWI	GGATC	4 cut(s)	41, 104, 931, 944
AcsI	RAATTY	2 cut(s)	492, 897
AcuI	CTGAAG	2 cut(s)	906, 963
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	3 cut(s)	567, 839, 998
AfiI	CCNNNNNNNGG	2 cut(s)	124, 338
AgsI	TTSAA	3 cut(s)	418, 491, 904
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	670, 861
AluBI	AGCT	4 cut(s)	372, 538, 844, 980
AluI	AGCT	4 cut(s)	372, 538, 844, 980
Alw26I	GTCTC	2 cut(s)	35, 426
AlwI	GGATC	4 cut(s)	41, 104, 931, 944
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	6 cut(s)	76, 372, 535, 538, 844, 858
ApoI	RAATTY	2 cut(s)	492, 897
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	443, 686, 790, 841
AsuII	TTCGAA	1 cut(s)	801
AvaI	CYCGRG	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	936
BbvI	GCAGC	6 cut(s)	88, 359, 525, 547, 831, 845
BccI	CCATC	3 cut(s)	336, 428, 1008
BciT130I	CCWGG	2 cut(s)	672, 863
BciVI	GTATCC	1 cut(s)	979
BcoDI	GTCTC	2 cut(s)	35, 426
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	3 cut(s)	99, 119, 593
BfmI	CTRYAG	2 cut(s)	241, 533
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	6 cut(s)	77, 373, 536, 539, 845, 859
BlsI	GCNGC	6 cut(s)	78, 374, 537, 540, 846, 860
Bme1390I	CCNGG	2 cut(s)	672, 863
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	528, 938
BmrFI	CCNGG	2 cut(s)	672, 863
BoxI	GACNNNNGTC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu14I	TTCGAA	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	825
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 338
Bse118I	RCCGGY	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	672, 863
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	6 cut(s)	223, 347, 772, 913, 922, 1019
BseLI	CCNNNNNNNGG	2 cut(s)	124, 338
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	2 cut(s)	242, 485
BseRI	GAGGAG	7 cut(s)	216, 737, 752, 767, 770, 773, 776
BseXI	GCAGC	6 cut(s)	88, 359, 525, 547, 831, 845
BshFI	GGCC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	132, 303
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	124, 338
BsmAI	GTCTC	2 cut(s)	35, 426
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	801
Bsp143I	GATC	4 cut(s)	46, 58, 109, 936
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	1 cut(s)	815
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	241, 484
BspLI	GGNNCC	2 cut(s)	528, 938
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	4 cut(s)	41, 104, 931, 944
BspT104I	TTCGAA	1 cut(s)	801
BsrDI	GCAATG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	4 cut(s)	46, 58, 109, 936
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	825
Bst2UI	CCWGG	2 cut(s)	672, 863
Bst4CI	ACNGT	2 cut(s)	478, 632
Bst6I	CTCTTC	3 cut(s)	714, 729, 744
BstACI	GRCGYC	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	801
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	228, 471
BstDSI	CCRYGG	1 cut(s)	825
BstENI	CCTNNNNNAGG	2 cut(s)	122, 336
BstF5I	GGATG	6 cut(s)	223, 347, 772, 913, 922, 1019
BstKTI	GATC	4 cut(s)	49, 61, 112, 939
BstMAI	GTCTC	2 cut(s)	35, 426
BstMBI	GATC	4 cut(s)	46, 58, 109, 936
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNI	CCWGG	2 cut(s)	672, 863
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	670, 861
BstSFI	CTRYAG	2 cut(s)	241, 533
BstV1I	GCAGC	6 cut(s)	88, 359, 525, 547, 831, 845
BstX2I	RGATCY	3 cut(s)	46, 58, 936
BstYI	RGATCY	3 cut(s)	46, 58, 936
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	907
BtsCI	GGATG	6 cut(s)	223, 347, 772, 913, 922, 1019
BtsIMutI	CAGTG	1 cut(s)	958
Cac8I	GCNNGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	566, 838, 997
CviAII	CATG	4 cut(s)	159, 257, 500, 826
CviJI	RGCY	7 cut(s)	79, 131, 156, 372, 538, 844, 980
CviKI_1	RGCY	7 cut(s)	79, 131, 156, 372, 538, 844, 980
CviQI	GTAC	3 cut(s)	566, 838, 997
DdeI	CTNAG	2 cut(s)	228, 471
DpnI	GATC	4 cut(s)	48, 60, 111, 938
DpnII	GATC	4 cut(s)	46, 58, 109, 936
Eam1104I	CTCTTC	3 cut(s)	714, 729, 744
EarI	CTCTTC	3 cut(s)	714, 729, 744
Eco130I	CCWWGG	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	906, 963
Eco88I	CYCGRG	1 cut(s)	5
EcoNI	CCTNNNNNAGG	2 cut(s)	122, 336
EcoRII	CCWGG	2 cut(s)	670, 861
EcoRV	GATATC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	4 cut(s)	162, 260, 503, 829
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	4 cut(s)	158, 256, 499, 825
FauNDI	CATATG	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	6 cut(s)	77, 373, 536, 539, 845, 859
FokI	GGATG	6 cut(s)	230, 354, 779, 920, 929, 1026
Fsp4HI	GCNGC	6 cut(s)	77, 373, 536, 539, 845, 859
FspBI	CTAG	3 cut(s)	99, 119, 593
GluI	GCNGC	6 cut(s)	77, 373, 536, 539, 845, 859
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	132, 303
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	162, 260, 503, 829
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HinfI	GANTC	4 cut(s)	170, 356, 483, 509
HpaII	CCGG	2 cut(s)	132, 303
HphI	GGTGA	4 cut(s)	443, 686, 790, 841
Hpy166II	GTNNAC	4 cut(s)	104, 401, 712, 997
Hpy188I	TCNGA	5 cut(s)	63, 169, 231, 300, 474
Hpy188III	TCNNGA	4 cut(s)	215, 593, 635, 884
Hpy8I	GTNNAC	4 cut(s)	104, 401, 712, 997
Hpy99I	CGWCG	2 cut(s)	636, 692
HpyAV	CCTTC	3 cut(s)	124, 184, 898
HpyCH4III	ACNGT	2 cut(s)	478, 632
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	76, 260, 375, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpyF3I	CTNAG	2 cut(s)	228, 471
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	162, 260, 503, 829
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	46, 58, 109, 936
Lsp1109I	GCAGC	6 cut(s)	88, 359, 525, 547, 831, 845
MaeI	CTAG	3 cut(s)	99, 119, 593
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	4 cut(s)	161, 279, 322, 626
MalI	GATC	4 cut(s)	48, 60, 111, 938
MboI	GATC	4 cut(s)	46, 58, 109, 936
MboII	GAAGA	8 cut(s)	608, 613, 731, 746, 761, 899, 902, 956
MflI	RGATCY	3 cut(s)	46, 58, 936
MluCI	AATT	9 cut(s)	261, 382, 457, 492, 545, 557, 810, 897, 1018
MlyI	GAGTC	3 cut(s)	179, 350, 492
MmeI	TCCRAC	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	5 cut(s)	17, 93, 387, 990, 1033
MslI	CAYNNNNRTG	3 cut(s)	429, 502, 504
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	2 cut(s)	132, 303
MspR9I	CCNGG	2 cut(s)	672, 863
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	2 cut(s)	672, 863
MwoI	GCNNNNNNNGC	1 cut(s)	547
NaeI	GCCGGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	4 cut(s)	46, 58, 109, 936
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	4 cut(s)	162, 260, 503, 829
NlaIV	GGNNCC	2 cut(s)	528, 938
NmuCI	GTSAC	2 cut(s)	322, 626
NspV	TTCGAA	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 711, 798
PctI	GAATGC	1 cut(s)	375
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	6 cut(s)	78, 374, 537, 540, 846, 860
PleI	GAGTC	3 cut(s)	178, 350, 491
PpsI	GAGTC	3 cut(s)	178, 350, 491
PshAI	GACNNNNGTC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	670, 861
PspGI	CCWGG	2 cut(s)	670, 861
PspN4I	GGNNCC	2 cut(s)	528, 938
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	537
PsuI	RGATCY	3 cut(s)	46, 58, 936
PvuII	CAGCTG	1 cut(s)	538
RsaI	GTAC	3 cut(s)	567, 839, 998
RsaNI	GTAC	3 cut(s)	566, 838, 997
RseI	CAYNNNNRTG	3 cut(s)	429, 502, 504
SaqAI	TTAA	5 cut(s)	17, 93, 387, 990, 1033
SatI	GCNGC	6 cut(s)	77, 373, 536, 539, 845, 859
Sau3AI	GATC	4 cut(s)	46, 58, 109, 936
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	3 cut(s)	179, 350, 492
ScrFI	CCNGG	2 cut(s)	672, 863
SfcI	CTRYAG	2 cut(s)	241, 533
SfuI	TTCGAA	1 cut(s)	801
SmiMI	CAYNNNNRTG	3 cut(s)	429, 502, 504
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	9 cut(s)	261, 382, 457, 492, 545, 557, 810, 897, 1018
SsiI	CCGC	1 cut(s)	815
SspI	AATATT	1 cut(s)	798
SspMI	CTAG	3 cut(s)	99, 119, 593
StyD4I	CCNGG	2 cut(s)	670, 861
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	2 cut(s)	478, 632
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	177, 801
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	9 cut(s)	261, 382, 457, 492, 545, 557, 810, 897, 1018
TatI	WGTACW	2 cut(s)	837, 996
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	5 cut(s)	17, 93, 387, 990, 1033
Tru9I	TTAA	5 cut(s)	17, 93, 387, 990, 1033
TscAI	CASTG	1 cut(s)	958
TseFI	GTSAC	2 cut(s)	322, 626
TseI	GCWGC	6 cut(s)	76, 372, 535, 538, 844, 858
Tsp45I	GTSAC	2 cut(s)	322, 626
TspDTI	ATGAA	5 cut(s)	213, 516, 530, 578, 992
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	958
XagI	CCTNNNNNAGG	2 cut(s)	122, 336
XapI	RAATTY	2 cut(s)	492, 897
XbaI	TCTAGA	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	3 cut(s)	99, 119, 593
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.