RLG00000034562

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001042
Physical Location & Seq
Forward (+)
45020705 .. 45021806
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034562

Sequence Viewer

Length: 1014 bp
ATGGCGTGGTGTAGGCAGCAGTGTTTTGCAATGTTGGAAGGTTTTGCAACCAGCAAAGCAACGGCCGCGGCGGCTACGTCTACGTTAGCAAGCAACTGGAAGAAGAAGACGAAGGAAACTAGTATGTTTTCAGAATTCATAAGAAGAAATTCTTCTACTTTAAGACCACTTAAGGCAGAGGAGAAAAAGAAGAAAGAAATCATAGAAGAAGAAAGCTTTAAGTCCAAGTCTCTCTACTTATGTTTCGAGGAGGACACTGACGACAATGTTCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCATCAACAATACATGGTGGTGATGATATGAAATTACAGAAAGTTGTTTATAGATGTGGACCGAAAACGGTTGTTCCCCTACATATGATAACTGGTGTTGTCGGCTCCAAAATTATTTTCTCTGGTGGTAAGGTTGAACCGGAGAAAAAACCTTCTCATATTGTACAATATTCACTAAGTAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAATTCTGGTCGGTGTGACTGTGAGTCATTCGAGATAATTGAACCAATACAGGATGCCTGGTTGCCTCTGGATGTGCCTCTTCGGAAGTATCCCTACGGCTTCACTCATGCAATTGCAGGCACTAAAATCTTACTCTGGGGTAGAAATCAGACCGGAGTGTACATGTTTGACATGACCCACCCGAAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGACGCTATATTCCCTTTATTGGTGGTTATGATCAACTATTTGTCAAGTTCAAGTTCCATCATGGTCATGGTGAAGGCTTCCTAATGTTCTCCATTAATTTGGAACAACCTCATAAAGTACTAGCCTTCTACATGTCTTATACATGTGATTCCTTGAAACCTATGGAACCTCTGCAGCTGCCAGAATGGCCTCCAAGATTTCATAGACCAAGTCAGTGTCTATTTTTTCACCTAGAAAGGGCAAAAAGTCGGCCTTGTTTTCTCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

38.56

Weight (kDa)

8.53

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 304, 533
AccI GTMKAC 1 cut(s) 80
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 66, 68, 71
AclWI GGATC 2 cut(s) 506, 518
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 3 cut(s) 134, 148, 529
AfaI GTAC 3 cut(s) 471, 689, 864
AfiI CCNNNNNNNGG 7 cut(s) 304, 533, 716, 742, 743, 764, 982
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 3 cut(s) 690, 876, 887
AgsI TTSAA 5 cut(s) 281, 443, 569, 796, 901
AhdI GACNNNNNGTC 1 cut(s) 550
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 1 cut(s) 584
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 2 cut(s) 216, 922
AluI AGCT 2 cut(s) 216, 922
Alw26I GTCTC 2 cut(s) 234, 500
AlwI GGATC 2 cut(s) 506, 518
AoxI GGCC 3 cut(s) 63, 932, 995
ApeKI GCWGC 3 cut(s) 16, 919, 922
ApoI RAATTY 3 cut(s) 134, 148, 529
AseI ATTAAT 1 cut(s) 840
Asp700I GAANNNNTTC 2 cut(s) 148, 151
AspS9I GGNCC 2 cut(s) 365, 733
AsuHPI GGTGA 3 cut(s) 338, 827, 965
AvaII GGWCC 2 cut(s) 365, 733
BarI GAAGNNNNNNTAC 2 cut(s) 605, 637
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 28, 909, 931
BccI CCATC 4 cut(s) 293, 306, 714, 810
BceAI ACGGC 2 cut(s) 78, 640
BciT130I CCWGG 1 cut(s) 586
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 2 cut(s) 234, 500
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 3 cut(s) 120, 866, 977
BfmI CTRYAG 1 cut(s) 917
BfrI CTTAAG 1 cut(s) 170
BfuI GTATCC 1 cut(s) 627
BglI GCCNNNNNGGC 2 cut(s) 71, 931
BisI GCNGC 6 cut(s) 17, 66, 69, 72, 920, 923
BlsI GCNGC 6 cut(s) 18, 67, 70, 73, 921, 924
BmcAI AGTACT 1 cut(s) 864
Bme1390I CCNGG 1 cut(s) 586
Bme18I GGWCC 2 cut(s) 365, 733
BmeRI GACNNNNNGTC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 365, 733
BmiI GGNNCC 3 cut(s) 412, 735, 912
BmrFI CCNGG 1 cut(s) 586
BmsI GCATC 2 cut(s) 317, 571
BpiI GAAGAC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 2 cut(s) 445, 680
Bsc4I CCNNNNNNNGG 7 cut(s) 304, 533, 716, 742, 743, 764, 982
Bse1I ACTGG 2 cut(s) 101, 403
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 586
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 3 cut(s) 586, 604, 725
BseLI CCNNNNNNNGG 7 cut(s) 304, 533, 716, 742, 743, 764, 982
BseMI GCAATG 1 cut(s) 36
BseNI ACTGG 2 cut(s) 101, 403
BseRI GAGGAG 2 cut(s) 194, 263
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 28, 909, 931
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 65, 934, 997
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 446, 681
BslFI GGGAC 1 cut(s) 759
BslI CCNNNNNNNGG 7 cut(s) 304, 533, 716, 742, 743, 764, 982
BsmAI GTCTC 2 cut(s) 234, 500
BsmFI GGGAC 1 cut(s) 759
BsnI GGCC 3 cut(s) 65, 934, 997
Bsp1407I TGTACA 2 cut(s) 469, 687
Bsp143I GATC 3 cut(s) 511, 523, 775
BspACI CCGC 3 cut(s) 66, 68, 71
BspANI GGCC 3 cut(s) 65, 934, 997
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 3 cut(s) 412, 735, 912
BspMAI CTGCAG 1 cut(s) 921
BspPI GGATC 2 cut(s) 506, 518
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 2 cut(s) 469, 687
BsrI ACTGG 2 cut(s) 101, 403
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 511, 523, 775
Bst2UI CCWGG 1 cut(s) 586
Bst4CI ACNGT 2 cut(s) 376, 548
Bst6I CTCTTC 1 cut(s) 612
BstAFI CTTAAG 1 cut(s) 170
BstAUI TGTACA 2 cut(s) 469, 687
BstC8I GCNNGC 2 cut(s) 91, 646
BstDEI CTNAG 1 cut(s) 482
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 586, 604, 725
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 3 cut(s) 514, 526, 778
BstMAI GTCTC 2 cut(s) 234, 500
BstMBI GATC 3 cut(s) 511, 523, 775
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 65, 71, 931
BstNI CCWGG 1 cut(s) 586
BstNSI RCATGY 3 cut(s) 694, 880, 891
BstSCI CCNGG 1 cut(s) 584
BstSFI CTRYAG 1 cut(s) 917
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 28, 909, 931
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 511, 523
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 2 cut(s) 511, 523
BstZI CGGCCG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 3 cut(s) 65, 934, 997
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 3 cut(s) 586, 604, 725
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 3 cut(s) 26, 255, 965
Cac8I GCNNGC 2 cut(s) 91, 646
Cfr13I GGNCC 2 cut(s) 365, 733
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 1 cut(s) 756
Csp6I GTAC 3 cut(s) 470, 688, 863
CviAII CATG 9 cut(s) 272, 320, 635, 691, 700, 806, 812, 877, 888
CviQI GTAC 3 cut(s) 470, 688, 863
DdeI CTNAG 1 cut(s) 482
DpnI GATC 3 cut(s) 513, 525, 777
DpnII GATC 3 cut(s) 511, 523, 775
DriI GACNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 612
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 612
EclXI CGGCCG 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 365, 733
Eco52I CGGCCG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 584
FaeI CATG 9 cut(s) 275, 323, 638, 694, 703, 809, 815, 880, 891
FalI AAGNNNNNCTT 4 cut(s) 136, 168, 982, 1014
FaqI GGGAC 1 cut(s) 759
FatI CATG 9 cut(s) 271, 319, 634, 690, 699, 805, 811, 876, 887
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 775
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 6 cut(s) 17, 66, 69, 72, 920, 923
FokI GGATG 3 cut(s) 593, 611, 732
Fsp4HI GCNGC 6 cut(s) 17, 66, 69, 72, 920, 923
FspBI CTAG 3 cut(s) 120, 866, 977
GluI GCNGC 6 cut(s) 17, 66, 69, 72, 920, 923
HaeIII GGCC 3 cut(s) 65, 934, 997
HapII CCGG 2 cut(s) 446, 681
HgaI GACGC 1 cut(s) 756
Hin1II CATG 9 cut(s) 275, 323, 638, 694, 703, 809, 815, 880, 891
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 2 cut(s) 551, 893
HpaII CCGG 2 cut(s) 446, 681
HphI GGTGA 3 cut(s) 338, 827, 965
Hpy166II GTNNAC 3 cut(s) 81, 365, 688
Hpy188I TCNGA 4 cut(s) 133, 290, 612, 678
Hpy188III TCNNGA 2 cut(s) 559, 596
Hpy8I GTNNAC 3 cut(s) 81, 365, 688
HpyAV CCTTC 5 cut(s) 32, 106, 468, 812, 880
HpyCH4III ACNGT 2 cut(s) 376, 548
HpyCH4IV ACGT 2 cut(s) 77, 83
HpyCH4V TGCA 5 cut(s) 29, 47, 638, 644, 919
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 71, 931
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 2 cut(s) 77, 83
Hsp92II CATG 9 cut(s) 275, 323, 638, 694, 703, 809, 815, 880, 891
Ksp22I TGATCA 1 cut(s) 775
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 3 cut(s) 511, 523, 775
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 3 cut(s) 28, 909, 931
LweI GCATC 2 cut(s) 317, 571
MaeI CTAG 3 cut(s) 120, 866, 977
MaeII ACGT 2 cut(s) 77, 83
MaeIII GTNAC 1 cut(s) 542
MalI GATC 3 cut(s) 513, 525, 777
MboI GATC 3 cut(s) 511, 523, 775
MboII GAAGA 9 cut(s) 112, 115, 118, 144, 156, 202, 218, 221, 599
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 2 cut(s) 511, 523
MluCI AATT 9 cut(s) 134, 148, 338, 417, 529, 564, 639, 728, 841
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 8 cut(s) 172, 241, 244, 603, 615, 864, 924, 945
MroXI GAANNNNTTC 2 cut(s) 148, 151
MseI TTAA 5 cut(s) 161, 171, 219, 293, 840
MslI CAYNNNNRTG 2 cut(s) 324, 810
MspA1I CMGCKG 2 cut(s) 68, 922
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 2 cut(s) 446, 681
MspR9I CCNGG 1 cut(s) 586
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 586
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 65, 71, 931
NdeI CATATG 1 cut(s) 390
NdeII GATC 3 cut(s) 511, 523, 775
NlaIII CATG 9 cut(s) 275, 323, 638, 694, 703, 809, 815, 880, 891
NlaIV GGNNCC 3 cut(s) 412, 735, 912
NmuCI GTSAC 1 cut(s) 542
NspI RCATGY 3 cut(s) 694, 880, 891
PciI ACATGT 3 cut(s) 690, 876, 887
PdmI GAANNNNTTC 2 cut(s) 148, 151
PfeI GAWTC 1 cut(s) 893
PflFI GACNNNGTC 1 cut(s) 954
PflMI CCANNNNNTGG 2 cut(s) 304, 533
PkrI GCNGC 6 cut(s) 18, 67, 70, 73, 921, 924
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PscI ACATGT 3 cut(s) 690, 876, 887
PshBI ATTAAT 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 584
PspGI CCWGG 1 cut(s) 584
PspN4I GGNNCC 3 cut(s) 412, 735, 912
PspPI GGNCC 2 cut(s) 365, 733
PstI CTGCAG 1 cut(s) 921
PsuI RGATCY 2 cut(s) 511, 523
PsyI GACNNNGTC 1 cut(s) 954
PvuII CAGCTG 1 cut(s) 922
RsaI GTAC 3 cut(s) 471, 689, 864
RsaNI GTAC 3 cut(s) 470, 688, 863
RseI CAYNNNNRTG 2 cut(s) 324, 810
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 5 cut(s) 161, 171, 219, 293, 840
SatI GCNGC 6 cut(s) 17, 66, 69, 72, 920, 923
Sau3AI GATC 3 cut(s) 511, 523, 775
Sau96I GGNCC 2 cut(s) 365, 733
ScaI AGTACT 1 cut(s) 864
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 586
SfaNI GCATC 2 cut(s) 317, 571
SfcI CTRYAG 1 cut(s) 917
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 2 cut(s) 365, 733
SmiMI CAYNNNNRTG 2 cut(s) 324, 810
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 9 cut(s) 134, 148, 338, 417, 529, 564, 639, 728, 841
SsiI CCGC 3 cut(s) 66, 68, 71
SspI AATATT 1 cut(s) 476
SspMI CTAG 3 cut(s) 120, 866, 977
StyD4I CCNGG 1 cut(s) 584
TaaI ACNGT 2 cut(s) 376, 548
TaiI ACGT 2 cut(s) 80, 86
TaqI TCGA 2 cut(s) 246, 558
TaqII GACCGA 1 cut(s) 382
TasI AATT 9 cut(s) 134, 148, 338, 417, 529, 564, 639, 728, 841
TatI WGTACW 3 cut(s) 469, 687, 862
TauI GCSGC 3 cut(s) 68, 71, 74
TfiI GAWTC 1 cut(s) 893
Tru1I TTAA 5 cut(s) 161, 171, 219, 293, 840
Tru9I TTAA 5 cut(s) 161, 171, 219, 293, 840
TscAI CASTG 3 cut(s) 26, 262, 965
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 3 cut(s) 16, 919, 922
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 4 cut(s) 127, 260, 350, 935
TspRI CASTG 3 cut(s) 26, 262, 965
Tth111I GACNNNGTC 1 cut(s) 954
Van91I CCANNNNNTGG 2 cut(s) 304, 533
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 365, 733
VspI ATTAAT 1 cut(s) 840
XapI RAATTY 3 cut(s) 134, 148, 529
XceI RCATGY 3 cut(s) 694, 880, 891
XcmI CCANNNNNNNNNTGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 148, 151
XspI CTAG 3 cut(s) 120, 866, 977
ZrmI AGTACT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.