Rh2BG644500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001042
Physical Location & Seq
Forward (+)
86445744 .. 86446241
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG644500.1

Sequence Viewer

Length: 498 bp
ATGGAAGAAGAAAGCTTTAAGTATAAGTCACTCAACTTATGTTTCGAGGAGTACACTAACGACAATGCTCATCATGTTATTCAATCTATCAGATTAAGCCATCTGTTGGCACCACCAGTACATGGCAGCGATGATCTGAAATTACAGAGAGTTGCTTATAGACGTGGACCGGATACTGTTGTTCCCCTACATATGAGTACTGGCATCGTCGGCTCCAAAATTATTCTCTTTGGTGGTACGGTTTTTCCTCCGGTACGACATCATCATATTTTTGAATATTCACTGAGCAAAGAAGTTTGTGTGTTTGTGACAGATCCAAGCATAGATCCAAACCCGAAATTGCACCCTTCCCAAGTTTTTAAGATTAGTATACGTGACCCTGTTTTAGTAGAGATGGACGACAAACTTTATCGTTTTGGTGGTCGGTGTGACTGTGAGTCATTCGAGGTATTTGAACCAATACAGGATGACTGGTTGCCTCTGGATGCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.83

Weight (kDa)

5.51

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AccB7I CCANNNNNTGG 2 cut(s) 106, 122
AccI GTMKAC 1 cut(s) 370
AclWI GGATC 2 cut(s) 308, 320
AfaI GTAC 5 cut(s) 53, 120, 199, 238, 255
AfiI CCNNNNNNNGG 2 cut(s) 106, 122
AgsI TTSAA 3 cut(s) 83, 275, 455
AhdI GACNNNNNGTC 1 cut(s) 436
AjiI CACGTC 1 cut(s) 164
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
AlwI GGATC 2 cut(s) 308, 320
ApeKI GCWGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 167
AvaII GGWCC 1 cut(s) 167
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanI GGYRCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 108, 388
BciVI GTATCC 1 cut(s) 166
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 436
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 111, 214
BmsI GCATC 2 cut(s) 213, 475
BsaAI YACGTR 1 cut(s) 374
BsaWI WCCGGW 2 cut(s) 169, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 122
Bse1I ACTGG 3 cut(s) 116, 205, 476
BseGI GGATG 2 cut(s) 472, 490
BseLI CCNNNNNNNGG 2 cut(s) 106, 122
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 3 cut(s) 116, 205, 476
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 2 cut(s) 170, 251
BslI CCNNNNNNNGG 2 cut(s) 106, 122
Bsp143I GATC 3 cut(s) 133, 313, 325
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 111, 214
BspPI GGATC 2 cut(s) 308, 320
BspT107I GGYRCC 1 cut(s) 109
BsrI ACTGG 3 cut(s) 116, 205, 476
BssMI GATC 3 cut(s) 133, 313, 325
BssNAI GTATAC 1 cut(s) 371
Bst1107I GTATAC 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 178, 241, 434
BstBAI YACGTR 1 cut(s) 374
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 472, 490
BstKTI GATC 3 cut(s) 136, 316, 328
BstMBI GATC 3 cut(s) 133, 313, 325
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 313, 325
BstYI RGATCY 2 cut(s) 313, 325
BstZ17I GTATAC 1 cut(s) 371
BsuI GTATCC 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 472, 490
BtsIMutI CAGTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 5 cut(s) 52, 119, 198, 237, 254
CviAII CATG 2 cut(s) 74, 122
CviJI RGCY 3 cut(s) 15, 99, 213
CviKI_1 RGCY 3 cut(s) 15, 99, 213
CviQI GTAC 5 cut(s) 52, 119, 198, 237, 254
DdeI CTNAG 1 cut(s) 284
DpnI GATC 3 cut(s) 135, 315, 327
DpnII GATC 3 cut(s) 133, 313, 325
DriI GACNNNNNGTC 1 cut(s) 436
Eam1105I GACNNNNNGTC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 490
FaeI CATG 2 cut(s) 77, 125
FatI CATG 2 cut(s) 73, 121
FauNDI CATATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HapII CCGG 2 cut(s) 170, 251
Hin1II CATG 2 cut(s) 77, 125
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 1 cut(s) 437
HpaII CCGG 2 cut(s) 170, 251
Hpy166II GTNNAC 3 cut(s) 54, 167, 371
Hpy188I TCNGA 2 cut(s) 92, 138
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 3 cut(s) 54, 167, 371
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 3 cut(s) 178, 241, 434
HpyCH4IV ACGT 2 cut(s) 163, 373
HpyCH4V TGCA 2 cut(s) 343, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 2 cut(s) 163, 373
Hsp92II CATG 2 cut(s) 77, 125
Kzo9I GATC 3 cut(s) 133, 313, 325
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 8 cut(s) 129, 183, 186, 264, 393, 449, 457, 467
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 2 cut(s) 213, 475
MaeII ACGT 2 cut(s) 163, 373
MaeIII GTNAC 4 cut(s) 27, 307, 374, 428
MalI GATC 3 cut(s) 135, 315, 327
MboI GATC 3 cut(s) 133, 313, 325
MboII GAAGA 2 cut(s) 17, 20
MflI RGATCY 2 cut(s) 313, 325
MluCI AATT 3 cut(s) 140, 219, 338
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 4 cut(s) 40, 258, 439, 489
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 3 cut(s) 18, 95, 360
MspI CCGG 2 cut(s) 170, 251
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeI CATATG 1 cut(s) 192
NdeII GATC 3 cut(s) 133, 313, 325
NlaIII CATG 2 cut(s) 77, 125
NlaIV GGNNCC 2 cut(s) 111, 214
NmuCI GTSAC 4 cut(s) 27, 307, 374, 428
NsiI ATGCAT 1 cut(s) 490
PflMI CCANNNNNTGG 2 cut(s) 106, 122
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 111, 214
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 2 cut(s) 313, 325
RsaI GTAC 5 cut(s) 53, 120, 199, 238, 255
RsaNI GTAC 5 cut(s) 52, 119, 198, 237, 254
SaqAI TTAA 3 cut(s) 18, 95, 360
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 3 cut(s) 133, 313, 325
Sau96I GGNCC 1 cut(s) 167
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 446
SetI ASST 4 cut(s) 17, 166, 376, 450
SfaNI GCATC 2 cut(s) 213, 475
SinI GGWCC 1 cut(s) 167
Sse9I AATT 3 cut(s) 140, 219, 338
SspI AATATT 1 cut(s) 278
TaaI ACNGT 3 cut(s) 178, 241, 434
TaiI ACGT 2 cut(s) 166, 376
TaqI TCGA 2 cut(s) 45, 444
TasI AATT 3 cut(s) 140, 219, 338
TatI WGTACW 3 cut(s) 51, 118, 197
Tru1I TTAA 3 cut(s) 18, 95, 360
Tru9I TTAA 3 cut(s) 18, 95, 360
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 4 cut(s) 27, 307, 374, 428
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 4 cut(s) 27, 307, 374, 428
TspRI CASTG 1 cut(s) 288
Van91I CCANNNNNTGG 2 cut(s) 106, 122
VpaK11BI GGWCC 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 370
ZrmI AGTACT 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.