Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

86320048 .. 86332243

Gene Structure 12196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG644000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGTGGTGTAGGCGGCACTGTTTTGCAATGTTGGAAGGTTTTGCAACCAGAAGAGCAGCGGCCGCGGCAGCTACGTCAACGTTAGCAAGCAACTGGAAGAATGAGACGAAGAAAAGTAGTATGTTTTCAGAATTCATAAGAAGAAATTCTTCTACTTTATCAACAGTACTTAAGGCAAAGGAGAAAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTTAAGTATAAGTCACTCTATTTATGTTTCGAGGAGTACACTAACGACAATGCTCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCACCACCAGTACATGGCGGCGATGATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACTGTTGTTCCCCTACATATGAGTACTGGTGTCATCGGCTCCAAAATTATTTTCTCTGGTGGCAAGGTTTTTCCTCCGGTACAACATCATCATATTTTTGCATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCACAGATCCAAACCCAAAATTGCAGCCTTCCCAAGTTTTTAAGGTCAGTAGACCTGAACCTGTTTTAGTTGAGGTGGATGACAAACTTTATCGCTTTGGTGGTCTATGTAACTGTGAGTCATTCGAGGTATTTGAACCAATACAGGATGACTGGTTGCCTCTGGATGCGCCTCCTCGGAAGTATCCCTATGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTCTGGGGCAGAAATCAGACCGGAGTGTACATGTTTGACGCGACCCATCCAGAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGAGGCTATATTCCCTTTATTGATGGTTATGATCAACTATTTATCAAGTTTCATCATGGTGATGTATATCCTCGTCAGCAATTCAGTGCCCTTATAAAAGTACAACGTTGGGAAATCATAACCCTATGTCCTCTGTGGAAATTAGGGTTTAAGCGAGGGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

331

Amino Acids

37.67

Weight (kDa)

8.73

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AccB1I	GGYRCC	2 cut(s)	310, 734
AccB7I	CCANNNNNTGG	2 cut(s)	307, 323
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	2 cut(s)	68, 788
AciI	CCGC	5 cut(s)	16, 62, 66, 68, 327
AclI	AACGTT	2 cut(s)	83, 937
AclWI	GGATC	2 cut(s)	509, 521
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	134, 148
AfaI	GTAC	7 cut(s)	171, 257, 321, 400, 456, 776, 933
AfiI	CCNNNNNNNGG	6 cut(s)	307, 323, 751, 803, 829, 830
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	2 cut(s)	284, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	2 cut(s)	74, 219
AluI	AGCT	2 cut(s)	74, 219
Alw26I	GTCTC	2 cut(s)	101, 503
AlwI	GGATC	2 cut(s)	509, 521
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	59, 71, 544
ApoI	RAATTY	2 cut(s)	134, 148
Asp700I	GAANNNNTTC	2 cut(s)	148, 151
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	2 cut(s)	368, 820
AsuHPI	GGTGA	1 cut(s)	902
AvaII	GGWCC	2 cut(s)	368, 820
BaeGI	GKGCMC	1 cut(s)	922
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BanI	GGYRCC	2 cut(s)	310, 734
BbvI	GCAGC	3 cut(s)	71, 83, 556
BccI	CCATC	5 cut(s)	296, 309, 801, 801, 848
BciVI	GTATCC	2 cut(s)	367, 714
BclI	TGATCA	1 cut(s)	862
BcoDI	GTCTC	2 cut(s)	101, 503
BfrI	CTTAAG	1 cut(s)	173
BfuI	GTATCC	2 cut(s)	367, 714
BisI	GCNGC	8 cut(s)	17, 60, 63, 66, 69, 72, 328, 545
BlsI	GCNGC	8 cut(s)	18, 61, 64, 67, 70, 73, 329, 546
BmcAI	AGTACT	2 cut(s)	171, 400
Bme18I	GGWCC	2 cut(s)	368, 820
BmgT120I	GGNCC	2 cut(s)	368, 820
BmiI	GGNNCC	4 cut(s)	312, 415, 736, 822
BmsI	GCATC	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	66, 695
BsaWI	WCCGGW	3 cut(s)	370, 451, 767
Bsc4I	CCNNNNNNNGG	6 cut(s)	307, 323, 751, 803, 829, 830
Bse1I	ACTGG	4 cut(s)	101, 317, 406, 677
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	897
BseDI	CCNNGG	2 cut(s)	66, 695
BseGI	GGATG	5 cut(s)	604, 673, 691, 793, 812
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	6 cut(s)	307, 323, 751, 803, 829, 830
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	4 cut(s)	101, 317, 406, 677
BseRI	GAGGAG	2 cut(s)	266, 684
BseSI	GKGCMC	1 cut(s)	922
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	71, 83, 556
Bsh1236I	CGCG	2 cut(s)	68, 788
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	2 cut(s)	310, 734
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	371, 452, 768
BslI	CCNNNNNNNGG	6 cut(s)	307, 323, 751, 803, 829, 830
BsmAI	GTCTC	2 cut(s)	101, 503
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	922
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	4 cut(s)	334, 514, 526, 862
BspACI	CCGC	5 cut(s)	16, 62, 66, 68, 327
BspANI	GGCC	1 cut(s)	65
BspFNI	CGCG	2 cut(s)	68, 788
BspLI	GGNNCC	4 cut(s)	312, 415, 736, 822
BspPI	GGATC	2 cut(s)	509, 521
BspQI	GCTCTTC	1 cut(s)	49
BspT107I	GGYRCC	2 cut(s)	310, 734
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	101, 317, 406, 677
BssECI	CCNNGG	2 cut(s)	66, 695
BssMI	GATC	4 cut(s)	334, 514, 526, 862
Bst4CI	ACNGT	4 cut(s)	23, 169, 379, 635
Bst6I	CTCTTC	1 cut(s)	49
BstAFI	CTTAAG	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	91, 733
BstDEI	CTNAG	1 cut(s)	485
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	5 cut(s)	604, 673, 691, 793, 812
BstFNI	CGCG	2 cut(s)	68, 788
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	4 cut(s)	337, 517, 529, 865
BstMAI	GTCTC	2 cut(s)	101, 503
BstMBI	GATC	4 cut(s)	334, 514, 526, 862
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 68, 71
BstNSI	RCATGY	1 cut(s)	781
BstSLI	GKGCMC	1 cut(s)	922
BstUI	CGCG	2 cut(s)	68, 788
BstV1I	GCAGC	3 cut(s)	71, 83, 556
BstX2I	RGATCY	2 cut(s)	514, 526
BstYI	RGATCY	2 cut(s)	514, 526
BstZI	CGGCCG	1 cut(s)	63
BsuI	GTATCC	2 cut(s)	367, 714
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	5 cut(s)	604, 673, 691, 793, 812
BtsIMutI	CAGTG	2 cut(s)	19, 922
Cac8I	GCNNGC	2 cut(s)	91, 733
CciNI	GCGGCCGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	368, 820
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	7 cut(s)	170, 256, 320, 399, 455, 775, 932
CviAII	CATG	6 cut(s)	205, 275, 323, 722, 778, 887
CviJI	RGCY	8 cut(s)	65, 74, 219, 300, 414, 547, 714, 837
CviKI_1	RGCY	8 cut(s)	65, 74, 219, 300, 414, 547, 714, 837
CviQI	GTAC	7 cut(s)	170, 256, 320, 399, 455, 775, 932
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	4 cut(s)	336, 516, 528, 864
DpnII	GATC	4 cut(s)	334, 514, 526, 862
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	368, 820
Eco52I	CGGCCG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	6 cut(s)	208, 278, 326, 725, 781, 890
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FatI	CATG	6 cut(s)	204, 274, 322, 721, 777, 886
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	8 cut(s)	17, 60, 63, 66, 69, 72, 328, 545
FokI	GGATG	5 cut(s)	611, 680, 698, 780, 819
Fsp4HI	GCNGC	8 cut(s)	17, 60, 63, 66, 69, 72, 328, 545
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	8 cut(s)	17, 60, 63, 66, 69, 72, 328, 545
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	3 cut(s)	371, 452, 768
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	6 cut(s)	208, 278, 326, 725, 781, 890
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	2 cut(s)	201, 638
HpaII	CCGG	3 cut(s)	371, 452, 768
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	5 cut(s)	81, 258, 368, 572, 775
Hpy188I	TCNGA	5 cut(s)	133, 293, 339, 699, 765
Hpy188III	TCNNGA	2 cut(s)	683, 797
Hpy8I	GTNNAC	5 cut(s)	81, 258, 368, 572, 775
HpyAV	CCTTC	2 cut(s)	32, 558
HpyCH4III	ACNGT	4 cut(s)	23, 169, 379, 635
HpyCH4IV	ACGT	3 cut(s)	77, 83, 937
HpyCH4V	TGCA	6 cut(s)	29, 47, 476, 544, 725, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 68, 71
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	3 cut(s)	77, 83, 937
Hsp92II	CATG	6 cut(s)	208, 278, 326, 725, 781, 890
HspAI	GCGC	1 cut(s)	689
Ksp22I	TGATCA	1 cut(s)	862
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	334, 514, 526, 862
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	3 cut(s)	71, 83, 556
LweI	GCATC	1 cut(s)	676
MaeII	ACGT	3 cut(s)	77, 83, 937
MaeIII	GTNAC	2 cut(s)	231, 629
MalI	GATC	4 cut(s)	336, 516, 528, 864
MboI	GATC	4 cut(s)	334, 514, 526, 862
MboII	GAAGA	8 cut(s)	66, 112, 124, 144, 156, 205, 221, 224
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	2 cut(s)	514, 526
MhlI	GDGCHC	1 cut(s)	922
MluCI	AATT	9 cut(s)	134, 148, 341, 420, 539, 726, 815, 911, 971
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	1 cut(s)	15
MroXI	GAANNNNTTC	2 cut(s)	148, 151
MseI	TTAA	5 cut(s)	174, 222, 296, 561, 981
MslI	CAYNNNNRTG	2 cut(s)	888, 891
MspA1I	CMGCKG	2 cut(s)	62, 68
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	3 cut(s)	371, 452, 768
MunI	CAATTG	1 cut(s)	726
MvnI	CGCG	2 cut(s)	68, 788
MwoI	GCNNNNNNNGC	3 cut(s)	65, 68, 71
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	4 cut(s)	334, 514, 526, 862
NlaIII	CATG	6 cut(s)	208, 278, 326, 725, 781, 890
NlaIV	GGNNCC	4 cut(s)	312, 415, 736, 822
NmuCI	GTSAC	1 cut(s)	231
NotI	GCGGCCGC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	781
PciI	ACATGT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	49
PdmI	GAANNNNTTC	2 cut(s)	148, 151
PfeI	GAWTC	1 cut(s)	201
PflMI	CCANNNNNTGG	2 cut(s)	307, 323
PkrI	GCNGC	8 cut(s)	18, 61, 64, 67, 70, 73, 329, 546
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PscI	ACATGT	1 cut(s)	777
PsiI	TTATAA	1 cut(s)	926
Psp1406I	AACGTT	2 cut(s)	83, 937
PspN4I	GGNNCC	4 cut(s)	312, 415, 736, 822
PspPI	GGNCC	2 cut(s)	368, 820
PsuI	RGATCY	2 cut(s)	514, 526
RsaI	GTAC	7 cut(s)	171, 257, 321, 400, 456, 776, 933
RsaNI	GTAC	7 cut(s)	170, 256, 320, 399, 455, 775, 932
RseI	CAYNNNNRTG	2 cut(s)	888, 891
SacII	CCGCGG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	49
SaqAI	TTAA	5 cut(s)	174, 222, 296, 561, 981
SatI	GCNGC	8 cut(s)	17, 60, 63, 66, 69, 72, 328, 545
Sau3AI	GATC	4 cut(s)	334, 514, 526, 862
Sau96I	GGNCC	2 cut(s)	368, 820
ScaI	AGTACT	2 cut(s)	171, 400
SchI	GAGTC	1 cut(s)	647
SduI	GDGCHC	1 cut(s)	922
SfaNI	GCATC	1 cut(s)	676
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	2 cut(s)	368, 820
SmiMI	CAYNNNNRTG	2 cut(s)	888, 891
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	9 cut(s)	134, 148, 341, 420, 539, 726, 815, 911, 971
SsiI	CCGC	5 cut(s)	16, 62, 66, 68, 327
TaaI	ACNGT	4 cut(s)	23, 169, 379, 635
TaiI	ACGT	3 cut(s)	80, 86, 940
TaqI	TCGA	2 cut(s)	249, 645
TasI	AATT	9 cut(s)	134, 148, 341, 420, 539, 726, 815, 911, 971
TatI	WGTACW	6 cut(s)	169, 255, 319, 398, 774, 931
TauI	GCSGC	5 cut(s)	19, 65, 68, 71, 330
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	5 cut(s)	174, 222, 296, 561, 981
Tru9I	TTAA	5 cut(s)	174, 222, 296, 561, 981
TscAI	CASTG	2 cut(s)	26, 922
TseFI	GTSAC	1 cut(s)	231
TseI	GCWGC	3 cut(s)	59, 71, 544
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	2 cut(s)	127, 872
TspRI	CASTG	2 cut(s)	26, 922
Van91I	CCANNNNNTGG	2 cut(s)	307, 323
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	368, 820
XapI	RAATTY	2 cut(s)	134, 148
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	804
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	2 cut(s)	148, 151
ZrmI	AGTACT	2 cut(s)	171, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.