RLG00000022068

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Reverse (-)
80594969 .. 80596401
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022068

Sequence Viewer

Length: 1164 bp
ATGTTGGAAGGTTTTGCAACCAGGAAAACAGCGGCCGCTGGGGCTACGTCAACCTTAGCAAGCAACTGGGAGAAGGAGACGAAGAAAATTAGCATGTTTTCAGAATTCATAAGAAGAAATTTTTTCACTTTAGCACCACTTAAGGCAGAGGAGAAAAAGAAGAAAGAAATCATGGAAGAAGAAAGCTTTGAGTATAAGTCTCTCTACTTATGTTTCGAGGAGTACACTGACGACAATGTTCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCACCACCAATACATGGCGGCGATGATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGAAAACGGCTGTTCCCGTTGATATGAGCACCGGTGTCGTCGGCTCCAAAATTATTTTCTCGGGTAAGGTTGAACCGGTGGAAAAAGACACTACTTCTCATATTGTACAATATTCACTAGGTAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCAAAATTGCAGCCTTCCCAAGTTTTTAAGATTAGTACACCTGAACCTGTTTTAGTAGAGATGGACGACAAACTTTATCGTTTCGGTGGTCGGTGTGACTGCACTAAAATCTTACTCTGGGGTAGAAATCAGACCGGAGTGTACATGTTTGACGTGACCCACCCGGAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGAAGCTATATTCCTTCTATTGATGGTTATGATCAACTATTTATCAAGTTGAAGTTTCATCATGGTGATGGAGGGCAAAAAGTCGGACTTGTTTTCGTCCGTGAAACATTACGTGAGGATACATTACATGATTACTATTATGATCATTATGAATTTCCTTCTGATTATGATGACGACGACGACGACGATAATGAAGTCAACAAAGATGATGATGAAGACAACAAAGACGATGGTCATAATAATGATAATCACGACGCCTCTGATAATGTTAATTATGATGGCCTTGCGGATAGTGACAAGGTGAGAGTTCTTGTCATAATCTTTGAATACGAAATTGCTGAGGAATCTACGGACATCAAATACAAGTTGCTTATTACTCGCTACCTTGAATACTCTTCCAAGAATTTTGAAGAAGAATCTTGGACTGATACTTCACACCTGAGAGGTGCCTATGTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.38

Weight (kDa)

4.71

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 277, 1148
AccB7I CCANNNNNTGG 2 cut(s) 274, 290
AciI CCGC 4 cut(s) 32, 36, 294, 989
AclWI GGATC 2 cut(s) 479, 491
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 4 cut(s) 104, 118, 854, 1105
AcyI GRCGYC 1 cut(s) 957
AfaI GTAC 4 cut(s) 224, 444, 541, 647
AfiI CCNNNNNNNGG 5 cut(s) 274, 290, 674, 700, 701
AflII CTTAAG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 648
AgeI ACCGGT 2 cut(s) 368, 412
AgsI TTSAA 6 cut(s) 251, 410, 754, 1028, 1091, 1112
AjiI CACGTC 1 cut(s) 658
AjnI CCWGG 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 2 cut(s) 186, 708
AluI AGCT 2 cut(s) 186, 708
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 3 cut(s) 71, 204, 473
AlwI GGATC 2 cut(s) 479, 491
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 2 cut(s) 33, 982
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 4 cut(s) 104, 118, 854, 1105
AsiGI ACCGGT 2 cut(s) 368, 412
AspS9I GGNCC 2 cut(s) 335, 691
AsuC2I CCSGG 1 cut(s) 668
AsuHPI GGTGA 2 cut(s) 779, 1015
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 2 cut(s) 335, 691
BanI GGYRCC 2 cut(s) 277, 1148
BbsI GAAGAC 1 cut(s) 924
Bbv12I GWGCWC 1 cut(s) 368
BbvCI CCTCAGC 1 cut(s) 1041
BbvI GCAGC 1 cut(s) 526
BccI CCATC 8 cut(s) 263, 276, 559, 672, 719, 764, 926, 974
BceAI ACGGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 1 cut(s) 22
BciVI GTATCC 1 cut(s) 814
BclI TGATCA 2 cut(s) 733, 844
BcnI CCSGG 1 cut(s) 668
BcoDI GTCTC 3 cut(s) 71, 204, 473
BfaI CTAG 1 cut(s) 455
BfrI CTTAAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 814
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 4 cut(s) 33, 36, 295, 515
BlsI GCNGC 4 cut(s) 34, 37, 296, 516
Bme1390I CCNGG 2 cut(s) 22, 668
Bme18I GGWCC 2 cut(s) 335, 691
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 2 cut(s) 335, 691
BmiI GGNNCC 4 cut(s) 279, 382, 693, 1150
BmrFI CCNGG 2 cut(s) 22, 668
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
BoxI GACNNNNGTC 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 924
Bpu10I CCTNAGC 2 cut(s) 55, 1041
BpuMI CCSGG 1 cut(s) 668
BsaAI YACGTR 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 957
BsaWI WCCGGW 3 cut(s) 368, 412, 638
Bsc4I CCNNNNNNNGG 5 cut(s) 274, 290, 674, 700, 701
Bse118I RCCGGY 2 cut(s) 368, 412
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 683
BseLI CCNNNNNNNGG 5 cut(s) 274, 290, 674, 700, 701
BseMII CTCAG 2 cut(s) 1032, 1133
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 164, 233
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 589
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 35, 984
BshNI GGYRCC 2 cut(s) 277, 1148
BshTI ACCGGT 2 cut(s) 368, 412
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 4 cut(s) 369, 413, 639, 668
BslI CCNNNNNNNGG 5 cut(s) 274, 290, 674, 700, 701
BsmAI GTCTC 3 cut(s) 71, 204, 473
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 35, 984
BsoBI CYCGRG 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 368
Bsp1407I TGTACA 2 cut(s) 442, 645
Bsp143I GATC 5 cut(s) 301, 484, 496, 733, 844
BspACI CCGC 4 cut(s) 32, 36, 294, 989
BspANI GGCC 2 cut(s) 35, 984
BspCNI CTCAG 2 cut(s) 1033, 1134
BspLI GGNNCC 4 cut(s) 279, 382, 693, 1150
BspPI GGATC 2 cut(s) 479, 491
BspT107I GGYRCC 2 cut(s) 277, 1148
BspTI CTTAAG 1 cut(s) 140
BsrFI RCCGGY 2 cut(s) 368, 412
BsrGI TGTACA 2 cut(s) 442, 645
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 2 cut(s) 368, 412
BssMI GATC 5 cut(s) 301, 484, 496, 733, 844
BssNI GRCGYC 1 cut(s) 957
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 1102
BstACI GRCGYC 1 cut(s) 957
BstAFI CTTAAG 1 cut(s) 140
BstAUI TGTACA 2 cut(s) 442, 645
BstBAI YACGTR 1 cut(s) 815
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 3 cut(s) 55, 1041, 1142
BstF5I GGATG 1 cut(s) 683
BstKTI GATC 5 cut(s) 304, 487, 499, 736, 847
BstMAI GTCTC 3 cut(s) 71, 204, 473
BstMBI GATC 5 cut(s) 301, 484, 496, 733, 844
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 2 cut(s) 97, 652
BstPAI GACNNNNGTC 1 cut(s) 933
BstSCI CCNGG 2 cut(s) 20, 666
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 2 cut(s) 484, 496
BstYI RGATCY 2 cut(s) 484, 496
BstZI CGGCCG 1 cut(s) 33
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 2 cut(s) 35, 984
BtgZI GCGATG 1 cut(s) 312
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 1 cut(s) 683
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 61
CciNI GCGGCCGC 1 cut(s) 33
Cfr10I RCCGGY 2 cut(s) 368, 412
Cfr13I GGNCC 2 cut(s) 335, 691
CseI GACGC 1 cut(s) 965
Csp6I GTAC 4 cut(s) 223, 443, 540, 646
CspAI ACCGGT 2 cut(s) 368, 412
CviAII CATG 7 cut(s) 94, 172, 242, 290, 649, 764, 830
CviJI RGCY 9 cut(s) 35, 44, 186, 267, 347, 381, 517, 708, 984
CviKI_1 RGCY 9 cut(s) 35, 44, 186, 267, 347, 381, 517, 708, 984
CviQI GTAC 4 cut(s) 223, 443, 540, 646
DdeI CTNAG 3 cut(s) 55, 1041, 1142
DpnI GATC 5 cut(s) 303, 486, 498, 735, 846
DpnII GATC 5 cut(s) 301, 484, 496, 733, 844
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 1102
EarI CTCTTC 1 cut(s) 1102
EclXI CGGCCG 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 335, 691
Eco52I CGGCCG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 7 cut(s) 97, 175, 245, 293, 652, 767, 833
FalI AAGNNNNNCTT 2 cut(s) 774, 806
FatI CATG 7 cut(s) 93, 171, 241, 289, 648, 763, 829
FbaI TGATCA 2 cut(s) 733, 844
Fnu4HI GCNGC 4 cut(s) 33, 36, 295, 515
FokI GGATG 1 cut(s) 690
Fsp4HI GCNGC 4 cut(s) 33, 36, 295, 515
FspBI CTAG 1 cut(s) 455
GluI GCNGC 4 cut(s) 33, 36, 295, 515
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 35, 984
HapII CCGG 4 cut(s) 369, 413, 639, 668
HgaI GACGC 1 cut(s) 965
Hin1I GRCGYC 1 cut(s) 957
Hin1II CATG 7 cut(s) 97, 175, 245, 293, 652, 767, 833
HincII GTYRAC 2 cut(s) 51, 901
HindII GTYRAC 2 cut(s) 51, 901
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 2 cut(s) 1046, 1118
HpaII CCGG 4 cut(s) 369, 413, 639, 668
HphI GGTGA 2 cut(s) 779, 1015
Hpy166II GTNNAC 6 cut(s) 51, 225, 335, 542, 646, 901
Hpy188I TCNGA 7 cut(s) 103, 260, 306, 636, 788, 865, 964
Hpy188III TCNNGA 1 cut(s) 953
Hpy8I GTNNAC 6 cut(s) 51, 225, 335, 542, 646, 901
Hpy99I CGWCG 6 cut(s) 380, 881, 884, 887, 890, 959
HpyAV CCTTC 4 cut(s) 67, 528, 726, 870
HpyCH4IV ACGT 3 cut(s) 47, 657, 814
HpyCH4V TGCA 3 cut(s) 17, 514, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 55, 1041, 1142
HpySE526I ACGT 3 cut(s) 47, 657, 814
Hsp92I GRCGYC 1 cut(s) 957
Hsp92II CATG 7 cut(s) 97, 175, 245, 293, 652, 767, 833
Ksp22I TGATCA 2 cut(s) 733, 844
Kzo9I GATC 5 cut(s) 301, 484, 496, 733, 844
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 1 cut(s) 526
MaeI CTAG 1 cut(s) 455
MaeII ACGT 3 cut(s) 47, 657, 814
MaeIII GTNAC 3 cut(s) 599, 658, 995
MalI GATC 5 cut(s) 303, 486, 498, 735, 846
MboI GATC 5 cut(s) 301, 484, 496, 733, 844
MboII GAAGA 9 cut(s) 94, 126, 172, 188, 191, 929, 1089, 1124, 1127
MflI RGATCY 2 cut(s) 484, 496
MhlI GDGCHC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 7 cut(s) 142, 211, 767, 811, 970, 1036, 1139
MseI TTAA 4 cut(s) 141, 263, 531, 972
MslI CAYNNNNRTG 3 cut(s) 765, 768, 942
MspA1I CMGCKG 2 cut(s) 32, 38
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 4 cut(s) 369, 413, 639, 668
MspR9I CCNGG 2 cut(s) 22, 668
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 668
NdeII GATC 5 cut(s) 301, 484, 496, 733, 844
NlaIII CATG 7 cut(s) 97, 175, 245, 293, 652, 767, 833
NlaIV GGNNCC 4 cut(s) 279, 382, 693, 1150
NmuCI GTSAC 3 cut(s) 599, 658, 995
NotI GCGGCCGC 1 cut(s) 33
NspI RCATGY 2 cut(s) 97, 652
PciI ACATGT 1 cut(s) 648
PcsI WCGNNNNNNNCGW 2 cut(s) 882, 885
PfeI GAWTC 2 cut(s) 1046, 1118
PflMI CCANNNNNTGG 2 cut(s) 274, 290
PinAI ACCGGT 2 cut(s) 368, 412
PkrI GCNGC 4 cut(s) 34, 37, 296, 516
Ppu21I YACGTR 1 cut(s) 815
PscI ACATGT 1 cut(s) 648
PshAI GACNNNNGTC 1 cut(s) 933
Psp6I CCWGG 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 4 cut(s) 279, 382, 693, 1150
PspPI GGNCC 2 cut(s) 335, 691
PsuI RGATCY 2 cut(s) 484, 496
RsaI GTAC 4 cut(s) 224, 444, 541, 647
RsaNI GTAC 4 cut(s) 223, 443, 540, 646
RseI CAYNNNNRTG 3 cut(s) 765, 768, 942
SaqAI TTAA 4 cut(s) 141, 263, 531, 972
SatI GCNGC 4 cut(s) 33, 36, 295, 515
Sau3AI GATC 5 cut(s) 301, 484, 496, 733, 844
Sau96I GGNCC 2 cut(s) 335, 691
ScrFI CCNGG 2 cut(s) 22, 668
SduI GDGCHC 1 cut(s) 368
SgrAI CRCCGGYG 1 cut(s) 368
SinI GGWCC 2 cut(s) 335, 691
SmiMI CAYNNNNRTG 3 cut(s) 765, 768, 942
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SsiI CCGC 4 cut(s) 32, 36, 294, 989
SspI AATATT 1 cut(s) 449
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 20, 666
TaiI ACGT 3 cut(s) 50, 660, 817
TaqI TCGA 1 cut(s) 216
TaqII GACCGA 1 cut(s) 352
TatI WGTACW 4 cut(s) 222, 442, 539, 645
TauI GCSGC 3 cut(s) 35, 38, 297
TfiI GAWTC 2 cut(s) 1046, 1118
Tru1I TTAA 4 cut(s) 141, 263, 531, 972
Tru9I TTAA 4 cut(s) 141, 263, 531, 972
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 3 cut(s) 599, 658, 995
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 3 cut(s) 599, 658, 995
TspDTI ATGAA 6 cut(s) 97, 230, 749, 867, 909, 930
TspGWI ACGGA 2 cut(s) 791, 1067
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 2 cut(s) 274, 290
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 335, 691
XapI RAATTY 4 cut(s) 104, 118, 854, 1105
XceI RCATGY 2 cut(s) 97, 652
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.