RLG00000022070

RNA binding

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
80610378 .. 80611859
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022070

Sequence Viewer

Length: 1278 bp
ATGGCGTGGTGTAGGCGGCACTGCAAAACAATGTTGGAAGGTTTTGCAACCAGAAAAGCAGCGGCTGCGGCGACTACGTTATCATTAGCAAGCAACTGGAAGAATGAGACGAAGAAAATTAGCACGTTTTCACAATTCATAAGAAGAAATTCTTCTACTTTAGCAACACTTAAGGCAGAGGAGAAAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTGAAGTATAAGTCACTCTATTTATGTTTCGAGGAGTACACTAACGACAATGCTCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCACCACCAGTACATGGCAGCGATGATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACTGTTGTTCCCCTACATATGAGTACTGGCGTCGTCGGCTCCAAAATTATTCTCTTTGGTGGTAAGGTTTTTCCTCCGGTACGACATCATCATATTTTTGAATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCGGAATTGCAGCCTTCCCAAGTTTTTAAGATTAGTATACCTGAACCTGTTCTAGTAGAGGTGGATGACAAACTTTATCGTTTCGGTGGTCGATGTGACTGTGAGTCATTTGAGGTTTTTGAACCAATACAGGATGCCTGGTTGCCACTGGATGTGCCTCCTCGAAAGTATCCCCACGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTCTGGGGTAGAAATCAGACCGGAGTATACATGTTTGACGCGACCCATCCGGAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGAAGCTATATTCCTTCTATTGATGGTTATGATCAACTATTTGTCAAGTTGAAGTTTCACCATCATGGTGATAGTGAGGGTTTCCTAATGTTCTCCATTAATTTGGAACAACCTCATACAGTACTAGCCTTCCACATGTCTTGTACATGTGATTCCTTGAAACCTATGGAACCTCTGCAGCTGCCAGAATGGCTTCCAAAATTTCATAGACCAAGTCGATGTCTGTTTTTTCACCTCGGAGGGCAAAAAGTCGGCCTTGTTTTCTCCCGTGATTCATTACGTGAGGATACATTACTTCTTGTCATAATCTTTGAATACGAAATTGCTGAGGAATCCATGGACATCAAATACAAGTTGCTTTGTACTCGCTGCCTTGAATACTCTTCCAAGAATCCTGAAGAAGAATCTTGGAACGGTACTTCACAACTAATAGGTGCCTATGTGATGTAA

Protein Analysis

426

Amino Acids

48.5

Weight (kDa)

6.32

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 307, 731, 1262
AccB7I CCANNNNNTGG 2 cut(s) 304, 320
AccI GTMKAC 2 cut(s) 568, 771
AccII CGCG 1 cut(s) 785
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 3 cut(s) 16, 62, 68
AclWI GGATC 2 cut(s) 506, 518
AcsI RAATTY 2 cut(s) 148, 1028
AcuI CTGAAG 1 cut(s) 1245
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 8 cut(s) 254, 318, 397, 453, 951, 973, 1192, 1246
AfiI CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 3 cut(s) 774, 963, 974
AgsI TTSAA 8 cut(s) 220, 281, 473, 653, 880, 988, 1142, 1205
AhdI GACNNNNNGTC 1 cut(s) 634
AjnI CCWGG 1 cut(s) 668
AluBI AGCT 3 cut(s) 216, 834, 1009
AluI AGCT 3 cut(s) 216, 834, 1009
Alw26I GTCTC 2 cut(s) 101, 500
AlwI GGATC 2 cut(s) 506, 518
AlwNI CAGNNNCTG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 1 cut(s) 1081
ApeKI GCWGC 7 cut(s) 59, 65, 324, 541, 1006, 1009, 1197
ApoI RAATTY 2 cut(s) 148, 1028
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 4 cut(s) 148, 151, 579, 1020
AspS9I GGNCC 2 cut(s) 365, 817
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 3 cut(s) 878, 908, 1052
AvaII GGWCC 2 cut(s) 365, 817
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BanI GGYRCC 3 cut(s) 307, 731, 1262
BbvCI CCTCAGC 1 cut(s) 1155
BbvI GCAGC 7 cut(s) 52, 71, 336, 553, 996, 1018, 1184
BccI CCATC 6 cut(s) 293, 306, 798, 798, 845, 897
BceAI ACGGC 1 cut(s) 724
BciT130I CCWGG 1 cut(s) 670
BciVI GTATCC 3 cut(s) 364, 711, 1108
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 2 cut(s) 101, 500
BfaI CTAG 2 cut(s) 584, 953
BfmI CTRYAG 1 cut(s) 1004
BfrI CTTAAG 1 cut(s) 170
BfuI GTATCC 3 cut(s) 364, 711, 1108
BglI GCCNNNNNGGC 1 cut(s) 1018
BmcAI AGTACT 2 cut(s) 397, 951
Bme1390I CCNGG 2 cut(s) 533, 670
Bme18I GGWCC 2 cut(s) 365, 817
BmeRI GACNNNNNGTC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 365, 817
BmiI GGNNCC 6 cut(s) 309, 412, 733, 819, 999, 1264
BmrFI CCNGG 2 cut(s) 533, 670
BmsI GCATC 1 cut(s) 655
Bpu10I CCTNAGC 1 cut(s) 1155
BpuMI CCSGG 1 cut(s) 533
BsaAI YACGTR 1 cut(s) 1109
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 706, 1063, 1164
BsaWI WCCGGW 4 cut(s) 367, 448, 764, 793
Bsc4I CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
Bse1I ACTGG 4 cut(s) 101, 314, 403, 684
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 1 cut(s) 670
BseDI CCNNGG 3 cut(s) 706, 1063, 1164
BseGI GGATG 5 cut(s) 601, 670, 688, 790, 809
BseLI CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
BseMII CTCAG 1 cut(s) 1146
BseNI ACTGG 4 cut(s) 101, 314, 403, 684
BseRI GAGGAG 3 cut(s) 194, 263, 681
BseXI GCAGC 7 cut(s) 52, 71, 336, 553, 996, 1018, 1184
Bsh1236I CGCG 1 cut(s) 785
BshFI GGCC 1 cut(s) 1083
BshNI GGYRCC 3 cut(s) 307, 731, 1262
BsiSI CCGG 5 cut(s) 368, 449, 533, 765, 794
BslI CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
BsmAI GTCTC 2 cut(s) 101, 500
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 1083
Bsp13I TCCGGA 1 cut(s) 793
Bsp1407I TGTACA 1 cut(s) 971
Bsp143I GATC 4 cut(s) 331, 511, 523, 859
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 3 cut(s) 16, 62, 68
BspANI GGCC 1 cut(s) 1083
BspCNI CTCAG 1 cut(s) 1147
BspEI TCCGGA 1 cut(s) 793
BspFNI CGCG 1 cut(s) 785
BspLI GGNNCC 6 cut(s) 309, 412, 733, 819, 999, 1264
BspMAI CTGCAG 1 cut(s) 1008
BspPI GGATC 2 cut(s) 506, 518
BspT107I GGYRCC 3 cut(s) 307, 731, 1262
BspTI CTTAAG 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 971
BsrI ACTGG 4 cut(s) 101, 314, 403, 684
BssECI CCNNGG 3 cut(s) 706, 1063, 1164
BssMI GATC 4 cut(s) 331, 511, 523, 859
BssNAI GTATAC 2 cut(s) 569, 772
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 1164
Bst1107I GTATAC 2 cut(s) 569, 772
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 4 cut(s) 376, 632, 949, 1244
Bst6I CTCTTC 1 cut(s) 1216
BstACI GRCGYC 1 cut(s) 402
BstAFI CTTAAG 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 971
BstBAI YACGTR 1 cut(s) 1109
BstC8I GCNNGC 2 cut(s) 91, 730
BstDEI CTNAG 2 cut(s) 482, 1155
BstDSI CCRYGG 2 cut(s) 706, 1164
BstF5I GGATG 5 cut(s) 601, 670, 688, 790, 809
BstFNI CGCG 1 cut(s) 785
BstKTI GATC 4 cut(s) 334, 514, 526, 862
BstMAI GTCTC 2 cut(s) 101, 500
BstMBI GATC 4 cut(s) 331, 511, 523, 859
BstMWI GCNNNNNNNGC 4 cut(s) 65, 68, 408, 1018
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 3 cut(s) 778, 967, 978
BstSCI CCNGG 2 cut(s) 531, 668
BstSFI CTRYAG 1 cut(s) 1004
BstUI CGCG 1 cut(s) 785
BstV1I GCAGC 7 cut(s) 52, 71, 336, 553, 996, 1018, 1184
BstX2I RGATCY 2 cut(s) 511, 523
BstXI CCANNNNNNTGG 1 cut(s) 931
BstYI RGATCY 2 cut(s) 511, 523
BstZ17I GTATAC 2 cut(s) 569, 772
BsuI GTATCC 3 cut(s) 364, 711, 1108
BsuRI GGCC 1 cut(s) 1083
BtgI CCRYGG 2 cut(s) 706, 1164
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 5 cut(s) 601, 670, 688, 790, 809
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 19, 677
Cac8I GCNNGC 2 cut(s) 91, 730
CaiI CAGNNNCTG 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 365, 817
CseI GACGC 2 cut(s) 391, 791
Csp6I GTAC 8 cut(s) 253, 317, 396, 452, 950, 972, 1191, 1245
CspCI CAANNNNNGTGG 2 cut(s) 950, 985
CviAII CATG 9 cut(s) 202, 272, 320, 719, 775, 893, 964, 975, 1165
CviQI GTAC 8 cut(s) 253, 317, 396, 452, 950, 972, 1191, 1245
DdeI CTNAG 2 cut(s) 482, 1155
DpnI GATC 4 cut(s) 333, 513, 525, 861
DpnII GATC 4 cut(s) 331, 511, 523, 859
DriI GACNNNNNGTC 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 1216
Eam1105I GACNNNNNGTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 1216
Eco130I CCWWGG 1 cut(s) 1164
Eco47I GGWCC 2 cut(s) 365, 817
Eco57I CTGAAG 1 cut(s) 1245
EcoRII CCWGG 1 cut(s) 668
EcoT14I CCWWGG 1 cut(s) 1164
ErhI CCWWGG 1 cut(s) 1164
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 9 cut(s) 205, 275, 323, 722, 778, 896, 967, 978, 1168
FalI AAGNNNNNCTT 4 cut(s) 136, 168, 1068, 1100
FatI CATG 9 cut(s) 201, 271, 319, 718, 774, 892, 963, 974, 1164
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 2 cut(s) 568, 771
FokI GGATG 5 cut(s) 608, 677, 695, 777, 816
FspBI CTAG 2 cut(s) 584, 953
HaeIII GGCC 1 cut(s) 1083
HapII CCGG 5 cut(s) 368, 449, 533, 765, 794
HgaI GACGC 2 cut(s) 391, 791
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 9 cut(s) 205, 275, 323, 722, 778, 896, 967, 978, 1168
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 7 cut(s) 198, 635, 980, 1100, 1160, 1219, 1232
HpaII CCGG 5 cut(s) 368, 449, 533, 765, 794
HphI GGTGA 3 cut(s) 878, 908, 1052
Hpy166II GTNNAC 4 cut(s) 255, 365, 569, 772
Hpy188I TCNGA 4 cut(s) 290, 336, 762, 1067
Hpy188III TCNNGA 2 cut(s) 794, 1223
Hpy8I GTNNAC 4 cut(s) 255, 365, 569, 772
Hpy99I CGWCG 2 cut(s) 407, 410
HpyAV CCTTC 4 cut(s) 32, 555, 852, 967
HpyCH4III ACNGT 4 cut(s) 376, 632, 949, 1244
HpyCH4IV ACGT 3 cut(s) 77, 125, 1108
HpyCH4V TGCA 6 cut(s) 24, 47, 541, 722, 728, 1006
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 68, 408, 1018
HpyF3I CTNAG 2 cut(s) 482, 1155
HpySE526I ACGT 3 cut(s) 77, 125, 1108
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 9 cut(s) 205, 275, 323, 722, 778, 896, 967, 978, 1168
Kpn2I TCCGGA 1 cut(s) 793
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 4 cut(s) 331, 511, 523, 859
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 7 cut(s) 52, 71, 336, 553, 996, 1018, 1184
LweI GCATC 1 cut(s) 655
MaeI CTAG 2 cut(s) 584, 953
MaeII ACGT 3 cut(s) 77, 125, 1108
MaeIII GTNAC 2 cut(s) 228, 626
MalI GATC 4 cut(s) 333, 513, 525, 861
MboI GATC 4 cut(s) 331, 511, 523, 859
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 2 cut(s) 511, 523
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 15
MroI TCCGGA 1 cut(s) 793
MroXI GAANNNNTTC 4 cut(s) 148, 151, 579, 1020
MseI TTAA 4 cut(s) 171, 293, 558, 927
MslI CAYNNNNRTG 2 cut(s) 891, 894
MspA1I CMGCKG 2 cut(s) 62, 1009
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 5 cut(s) 368, 449, 533, 765, 794
MspR9I CCNGG 2 cut(s) 533, 670
MunI CAATTG 1 cut(s) 723
MvaI CCWGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 4 cut(s) 65, 68, 408, 1018
NciI CCSGG 1 cut(s) 533
NcoI CCATGG 1 cut(s) 1164
NdeI CATATG 1 cut(s) 390
NdeII GATC 4 cut(s) 331, 511, 523, 859
NlaIII CATG 9 cut(s) 205, 275, 323, 722, 778, 896, 967, 978, 1168
NlaIV GGNNCC 6 cut(s) 309, 412, 733, 819, 999, 1264
NmuCI GTSAC 2 cut(s) 228, 626
NspI RCATGY 3 cut(s) 778, 967, 978
PciI ACATGT 3 cut(s) 774, 963, 974
PdmI GAANNNNTTC 4 cut(s) 148, 151, 579, 1020
PfeI GAWTC 6 cut(s) 198, 980, 1100, 1160, 1219, 1232
PflFI GACNNNGTC 1 cut(s) 1041
PflMI CCANNNNNTGG 2 cut(s) 304, 320
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
Ppu21I YACGTR 1 cut(s) 1109
PscI ACATGT 3 cut(s) 774, 963, 974
PshBI ATTAAT 1 cut(s) 927
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 6 cut(s) 309, 412, 733, 819, 999, 1264
PspPI GGNCC 2 cut(s) 365, 817
PstI CTGCAG 1 cut(s) 1008
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 511, 523
PsyI GACNNNGTC 1 cut(s) 1041
PvuII CAGCTG 1 cut(s) 1009
RsaI GTAC 8 cut(s) 254, 318, 397, 453, 951, 973, 1192, 1246
RsaNI GTAC 8 cut(s) 253, 317, 396, 452, 950, 972, 1191, 1245
RseI CAYNNNNRTG 2 cut(s) 891, 894
SaqAI TTAA 4 cut(s) 171, 293, 558, 927
Sau3AI GATC 4 cut(s) 331, 511, 523, 859
Sau96I GGNCC 2 cut(s) 365, 817
ScaI AGTACT 2 cut(s) 397, 951
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 2 cut(s) 533, 670
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 1 cut(s) 1004
SinI GGWCC 2 cut(s) 365, 817
SmiMI CAYNNNNRTG 2 cut(s) 891, 894
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SsiI CCGC 3 cut(s) 16, 62, 68
SspI AATATT 1 cut(s) 476
SspMI CTAG 2 cut(s) 584, 953
StyD4I CCNGG 2 cut(s) 531, 668
StyI CCWWGG 1 cut(s) 1164
TaaI ACNGT 4 cut(s) 376, 632, 949, 1244
TaiI ACGT 3 cut(s) 80, 128, 1111
TaqI TCGA 4 cut(s) 246, 622, 694, 1045
TatI WGTACW 6 cut(s) 252, 316, 395, 949, 971, 1190
TauI GCSGC 3 cut(s) 19, 65, 71
TfiI GAWTC 6 cut(s) 198, 980, 1100, 1160, 1219, 1232
Tru1I TTAA 4 cut(s) 171, 293, 558, 927
Tru9I TTAA 4 cut(s) 171, 293, 558, 927
TscAI CASTG 2 cut(s) 26, 684
TseFI GTSAC 2 cut(s) 228, 626
TseI GCWGC 7 cut(s) 59, 65, 324, 541, 1006, 1009, 1197
Tsp45I GTSAC 2 cut(s) 228, 626
TspDTI ATGAA 3 cut(s) 127, 1022, 1092
TspRI CASTG 2 cut(s) 26, 684
Tth111I GACNNNGTC 1 cut(s) 1041
Van91I CCANNNNNTGG 2 cut(s) 304, 320
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 365, 817
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 2 cut(s) 148, 1028
XceI RCATGY 3 cut(s) 778, 967, 978
XmiI GTMKAC 2 cut(s) 568, 771
XmnI GAANNNNTTC 4 cut(s) 148, 151, 579, 1020
XspI CTAG 2 cut(s) 584, 953
ZrmI AGTACT 2 cut(s) 397, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.