Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

88547572 .. 88566883

Gene Structure 19312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG658800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAAGAAGAAAGCTTTAAGTATAAGTCACTCTACTTATGTTTCGAGGAGTACACTAACGACAATGCTCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCACCACCAGTACATGGCAGCGATTATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACTGTTGTTCCCCTACATATGAGTACTGGCGTCGTCGGCTCCAAAATTATTCTCTTTGGTGGTGAGGTTTTTCCTCCGGTACGACATCATCATATTTTTGAATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCGGAATTGCAGCCTTCCCAAGTTTTTAAGATTAGAATACCTGAACCTGTTCTTGTAGAGGTGGATGACAAACTTTATCGTTTCGGTGGTCGATGTGACTGTGAGTCATTTGAGGTTTTTGAACCAATACAGGATGCCTGGTTGCCTCTGGATGTGCCTCCTCGAAAGTATCCCCACGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTCTGGGGTAGAAATCAGACCGGAGTATACATGTTTGACGCGACCCATCCAGAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGAAGCTATATTCCTTCTATTGATGTTTTCACAGGGGCGTCTAGGAAGGAAGGCTTTGGTCGGCGATCAAGGCTTGCAGATTTTACGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

239

Amino Acids

27.22

Weight (kDa)

5.67

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	106, 530
AccB7I	CCANNNNNTGG	2 cut(s)	103, 119
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	1 cut(s)	584
AclWI	GGATC	2 cut(s)	305, 317
AcyI	GRCGYC	2 cut(s)	201, 665
AfaI	GTAC	4 cut(s)	53, 117, 196, 252
AfiI	CCNNNNNNNGG	6 cut(s)	103, 119, 547, 599, 625, 626
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	80, 272, 452
AhdI	GACNNNNNGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	2 cut(s)	15, 633
AluI	AGCT	2 cut(s)	15, 633
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	305, 317
ApeKI	GCWGC	2 cut(s)	123, 340
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	164, 616
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	164, 616
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BanI	GGYRCC	2 cut(s)	106, 530
BbvI	GCAGC	2 cut(s)	135, 352
BccI	CCATC	4 cut(s)	92, 105, 597, 597
BceAI	ACGGC	1 cut(s)	523
BciT130I	CCWGG	1 cut(s)	469
BciVI	GTATCC	2 cut(s)	163, 510
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	669
BfuI	GTATCC	2 cut(s)	163, 510
BisI	GCNGC	2 cut(s)	124, 341
BlsI	GCNGC	2 cut(s)	125, 342
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	332, 469
Bme18I	GGWCC	2 cut(s)	164, 616
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	164, 616
BmiI	GGNNCC	4 cut(s)	108, 211, 532, 618
BmrFI	CCNGG	2 cut(s)	332, 469
BmsI	GCATC	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	332
BsaHI	GRCGYC	2 cut(s)	201, 665
BsaJI	CCNNGG	1 cut(s)	505
BsaWI	WCCGGW	3 cut(s)	166, 247, 563
Bsc4I	CCNNNNNNNGG	6 cut(s)	103, 119, 547, 599, 625, 626
Bse1I	ACTGG	2 cut(s)	113, 202
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	5 cut(s)	400, 469, 487, 589, 608
BseLI	CCNNNNNNNGG	6 cut(s)	103, 119, 547, 599, 625, 626
BseNI	ACTGG	2 cut(s)	113, 202
BseRI	GAGGAG	2 cut(s)	62, 480
BseXI	GCAGC	2 cut(s)	135, 352
Bsh1236I	CGCG	1 cut(s)	584
BshNI	GGYRCC	2 cut(s)	106, 530
BsiSI	CCGG	4 cut(s)	167, 248, 332, 564
BslI	CCNNNNNNNGG	6 cut(s)	103, 119, 547, 599, 625, 626
BsmAI	GTCTC	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	310, 322, 692
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	4 cut(s)	108, 211, 532, 618
BspPI	GGATC	2 cut(s)	305, 317
BspT107I	GGYRCC	2 cut(s)	106, 530
BsrI	ACTGG	2 cut(s)	113, 202
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	3 cut(s)	310, 322, 692
BssNAI	GTATAC	1 cut(s)	571
BssNI	GRCGYC	2 cut(s)	201, 665
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	175, 431
BstACI	GRCGYC	2 cut(s)	201, 665
BstC8I	GCNNGC	2 cut(s)	529, 702
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	5 cut(s)	400, 469, 487, 589, 608
BstFNI	CGCG	1 cut(s)	584
BstKTI	GATC	3 cut(s)	313, 325, 695
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	310, 322, 692
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 697
BstNI	CCWGG	1 cut(s)	469
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	330, 467
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	135, 352
BstX2I	RGATCY	2 cut(s)	310, 322
BstYI	RGATCY	2 cut(s)	310, 322
BstZ17I	GTATAC	1 cut(s)	571
BsuI	GTATCC	2 cut(s)	163, 510
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	5 cut(s)	400, 469, 487, 589, 608
Cac8I	GCNNGC	2 cut(s)	529, 702
Cfr13I	GGNCC	2 cut(s)	164, 616
CseI	GACGC	3 cut(s)	190, 590, 654
Csp6I	GTAC	4 cut(s)	52, 116, 195, 251
CviAII	CATG	4 cut(s)	71, 119, 518, 574
CviJI	RGCY	8 cut(s)	15, 96, 210, 343, 510, 633, 681, 700
CviKI_1	RGCY	8 cut(s)	15, 96, 210, 343, 510, 633, 681, 700
CviQI	GTAC	4 cut(s)	52, 116, 195, 251
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	3 cut(s)	312, 324, 694
DpnII	GATC	3 cut(s)	310, 322, 692
DriI	GACNNNNNGTC	1 cut(s)	433
Eam1105I	GACNNNNNGTC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	164, 616
EcoRII	CCWGG	1 cut(s)	467
FaeI	CATG	4 cut(s)	74, 122, 521, 577
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FatI	CATG	4 cut(s)	70, 118, 517, 573
FauNDI	CATATG	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	124, 341
FokI	GGATG	5 cut(s)	407, 476, 494, 576, 615
Fsp4HI	GCNGC	2 cut(s)	124, 341
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	2 cut(s)	124, 341
HapII	CCGG	4 cut(s)	167, 248, 332, 564
HgaI	GACGC	3 cut(s)	190, 590, 654
Hin1I	GRCGYC	2 cut(s)	201, 665
Hin1II	CATG	4 cut(s)	74, 122, 521, 577
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	4 cut(s)	167, 248, 332, 564
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	54, 164, 571
Hpy188I	TCNGA	4 cut(s)	89, 135, 561, 719
Hpy188III	TCNNGA	2 cut(s)	479, 593
Hpy8I	GTNNAC	3 cut(s)	54, 164, 571
Hpy99I	CGWCG	2 cut(s)	206, 209
HpyAV	CCTTC	4 cut(s)	354, 651, 667, 671
HpyCH4III	ACNGT	2 cut(s)	175, 431
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	4 cut(s)	340, 521, 527, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 697
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	713
Hsp92I	GRCGYC	2 cut(s)	201, 665
Hsp92II	CATG	4 cut(s)	74, 122, 521, 577
Kzo9I	GATC	3 cut(s)	310, 322, 692
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	2 cut(s)	135, 352
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	2 cut(s)	27, 425
MalI	GATC	3 cut(s)	312, 324, 694
MboI	GATC	3 cut(s)	310, 322, 692
MboII	GAAGA	2 cut(s)	17, 20
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	310, 322
MluCI	AATT	5 cut(s)	137, 216, 335, 522, 611
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	8 cut(s)	40, 229, 255, 382, 436, 486, 498, 501
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	3 cut(s)	18, 92, 357
MspI	CCGG	4 cut(s)	167, 248, 332, 564
MspR9I	CCNGG	2 cut(s)	332, 469
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	207, 697
NciI	CCSGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	3 cut(s)	310, 322, 692
NlaIII	CATG	4 cut(s)	74, 122, 521, 577
NlaIV	GGNNCC	4 cut(s)	108, 211, 532, 618
NmuCI	GTSAC	2 cut(s)	27, 425
NspI	RCATGY	1 cut(s)	577
PciI	ACATGT	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	378
PflMI	CCANNNNNTGG	2 cut(s)	103, 119
PkrI	GCNGC	2 cut(s)	125, 342
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PscI	ACATGT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	4 cut(s)	108, 211, 532, 618
PspPI	GGNCC	2 cut(s)	164, 616
PsuI	RGATCY	2 cut(s)	310, 322
RsaI	GTAC	4 cut(s)	53, 117, 196, 252
RsaNI	GTAC	4 cut(s)	52, 116, 195, 251
SaqAI	TTAA	3 cut(s)	18, 92, 357
SatI	GCNGC	2 cut(s)	124, 341
Sau3AI	GATC	3 cut(s)	310, 322, 692
Sau96I	GGNCC	2 cut(s)	164, 616
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	332, 469
SetI	ASST	8 cut(s)	17, 240, 373, 379, 393, 447, 635, 716
SfaNI	GCATC	1 cut(s)	454
SinI	GGWCC	2 cut(s)	164, 616
Sse9I	AATT	5 cut(s)	137, 216, 335, 522, 611
SspI	AATATT	1 cut(s)	275
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	330, 467
TaaI	ACNGT	2 cut(s)	175, 431
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	3 cut(s)	45, 421, 493
TasI	AATT	5 cut(s)	137, 216, 335, 522, 611
TatI	WGTACW	3 cut(s)	51, 115, 194
Tru1I	TTAA	3 cut(s)	18, 92, 357
Tru9I	TTAA	3 cut(s)	18, 92, 357
TseFI	GTSAC	2 cut(s)	27, 425
TseI	GCWGC	2 cut(s)	123, 340
Tsp45I	GTSAC	2 cut(s)	27, 425
Van91I	CCANNNNNTGG	2 cut(s)	103, 119
VpaK11BI	GGWCC	2 cut(s)	164, 616
XceI	RCATGY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	570
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.